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###
### Running command:
###
### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:miRLAB.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings miRLAB_1.12.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.8-bioc/meat/miRLAB.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘miRLAB/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘miRLAB’ version ‘1.12.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘miRLAB’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... ERROR
Running examples in ‘miRLAB-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: getData
> ### Title: getData from GDC
> ### Aliases: getData
>
> ### ** Examples
>
> RawGBM=getData("GBM")
--------------------------------------
o GDCquery: Searching in GDC database
--------------------------------------
Genome of reference: hg19
--------------------------------------------
oo Accessing GDC. This might take a while...
--------------------------------------------
ooo Project: TCGA-GBM
--------------------
oo Filtering results
--------------------
ooo By platform
ooo By access
ooo By experimental.strategy
ooo By data.type
ooo By file.type
----------------
oo Checking data
----------------
ooo Check if there are duplicated cases
ooo Check if there results for the query
-------------------
o Preparing output
-------------------
data_release data_type tags
1 Gene expression quantification normalized, gene, v2
2 Gene expression quantification gene, normalized, v2
3 Gene expression quantification gene, normalized, v2
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173 NA 7837237e-bd45-4928-8004-0fcab19e1206 435474
174 NA 70d769a1-5335-4013-841f-086d4ea5b300 434121
cases state_comment
1 TCGA-28-1753-01A-01R-1850-01 NA
2 TCGA-06-0680-11A-32R-A36H-07 NA
3 TCGA-19-1389-02A-21R-2005-01 NA
4 TCGA-06-0745-01A-01R-1849-01 NA
5 TCGA-27-1830-01A-01R-1850-01 NA
6 TCGA-06-0125-01A-01R-1849-01 NA
7 TCGA-12-0619-01A-01R-1849-01 NA
8 TCGA-76-4925-01A-01R-1850-01 NA
9 TCGA-14-0789-01A-01R-1849-01 NA
10 TCGA-06-0174-01A-01R-1849-01 NA
11 TCGA-06-2570-01A-01R-1849-01 NA
12 TCGA-06-1804-01A-01R-1849-01 NA
13 TCGA-32-1970-01A-01R-1850-01 NA
14 TCGA-27-1831-01A-01R-1850-01 NA
15 TCGA-14-1829-01A-01R-1850-01 NA
16 TCGA-19-5960-01A-11R-1850-01 NA
17 TCGA-02-2485-01A-01R-1849-01 NA
18 TCGA-06-0686-01A-01R-1849-01 NA
19 TCGA-06-5858-01A-01R-1849-01 NA
20 TCGA-32-1980-01A-01R-1850-01 NA
21 TCGA-32-2632-01A-01R-1850-01 NA
22 TCGA-76-4928-01B-01R-1850-01 NA
23 TCGA-32-2616-01A-01R-1850-01 NA
24 TCGA-26-5136-01B-01R-1850-01 NA
25 TCGA-06-5856-01A-01R-1849-01 NA
26 TCGA-06-0749-01A-01R-1849-01 NA
27 TCGA-28-5220-01A-01R-1850-01 NA
28 TCGA-06-0211-01B-01R-1849-01 NA
29 TCGA-14-0787-01A-01R-1849-01 NA
30 TCGA-28-5207-01A-01R-1850-01 NA
31 TCGA-06-0210-02A-01R-2005-01 NA
32 TCGA-28-5209-01A-01R-1850-01 NA
33 TCGA-14-1823-01A-01R-1849-01 NA
34 TCGA-27-1835-01A-01R-1850-01 NA
35 TCGA-12-0616-01A-01R-1849-01 NA
36 TCGA-76-4931-01A-01R-1850-01 NA
37 TCGA-28-2510-01A-01R-1850-01 NA
38 TCGA-06-0187-01A-01R-1849-01 NA
39 TCGA-15-0742-01A-01R-1850-01 NA
40 TCGA-14-0736-02A-01R-2005-01 NA
41 TCGA-15-1444-01A-02R-1850-01 NA
42 TCGA-28-5213-01A-01R-1850-01 NA
43 TCGA-06-5408-01A-01R-1849-01 NA
44 TCGA-06-0221-02A-11R-2005-01 NA
45 TCGA-26-5132-01A-01R-1850-01 NA
46 TCGA-76-4927-01A-01R-1850-01 NA
47 TCGA-19-0957-02A-11R-2005-01 NA
48 TCGA-76-4932-01A-01R-1850-01 NA
49 TCGA-06-0156-01A-02R-1849-01 NA
50 TCGA-16-1045-01B-01R-1850-01 NA
51 TCGA-06-0744-01A-01R-1849-01 NA
52 TCGA-06-0171-02A-11R-2005-01 NA
53 TCGA-06-0157-01A-01R-1849-01 NA
54 TCGA-06-0141-01A-01R-1849-01 NA
55 TCGA-08-0386-01A-01R-1849-01 NA
56 TCGA-06-0238-01A-02R-1849-01 NA
57 TCGA-41-4097-01A-01R-1850-01 NA
58 TCGA-06-2569-01A-01R-1849-01 NA
59 TCGA-06-2564-01A-01R-1849-01 NA
60 TCGA-06-0681-11A-41R-A36H-07 NA
61 TCGA-27-1832-01A-01R-1850-01 NA
62 TCGA-06-0130-01A-01R-1849-01 NA
63 TCGA-28-5208-01A-01R-1850-01 NA
64 TCGA-14-2554-01A-01R-1850-01 NA
65 TCGA-06-5414-01A-01R-1849-01 NA
66 TCGA-41-2572-01A-01R-1850-01 NA
67 TCGA-06-5413-01A-01R-1849-01 NA
68 TCGA-06-2557-01A-01R-1849-01 NA
69 TCGA-76-4929-01A-01R-1850-01 NA
70 TCGA-06-5410-01A-01R-1849-01 NA
71 TCGA-06-0750-01A-01R-1849-01 NA
72 TCGA-14-0781-01B-01R-1849-01 NA
73 TCGA-06-0878-01A-01R-1849-01 NA
74 TCGA-27-2521-01A-01R-1850-01 NA
75 TCGA-06-5418-01A-01R-1849-01 NA
76 TCGA-02-2483-01A-01R-1849-01 NA
77 TCGA-26-5135-01A-01R-1850-01 NA
78 TCGA-06-5416-01A-01R-1849-01 NA
79 TCGA-06-0129-01A-01R-1849-01 NA
80 TCGA-06-0152-02A-01R-2005-01 NA
81 TCGA-06-2562-01A-01R-1849-01 NA
82 TCGA-32-2634-01A-01R-1850-01 NA
83 TCGA-12-3652-01A-01R-1849-01 NA
84 TCGA-14-1402-02A-01R-2005-01 NA
85 TCGA-06-2563-01A-01R-1849-01 NA
86 TCGA-19-4065-02A-11R-2005-01 NA
87 TCGA-14-1034-02B-01R-2005-01 NA
88 TCGA-14-0790-01B-01R-1849-01 NA
89 TCGA-32-2615-01A-01R-1850-01 NA
90 TCGA-14-0817-01A-01R-1849-01 NA
91 TCGA-14-1034-01A-01R-1849-01 NA
92 TCGA-06-5412-01A-01R-1849-01 NA
93 TCGA-02-0047-01A-01R-1849-01 NA
94 TCGA-14-1825-01A-01R-1850-01 NA
95 TCGA-12-5295-01A-01R-1849-01 NA
96 TCGA-06-0184-01A-01R-1849-01 NA
97 TCGA-06-0211-02A-02R-2005-01 NA
98 TCGA-06-2558-01A-01R-1849-01 NA
99 TCGA-12-1597-01B-01R-1849-01 NA
100 TCGA-06-0882-01A-01R-1849-01 NA
101 TCGA-28-5204-01A-01R-1850-01 NA
102 TCGA-06-0646-01A-01R-1849-01 NA
103 TCGA-28-5218-01A-01R-1850-01 NA
104 TCGA-06-2561-01A-02R-1849-01 NA
105 TCGA-06-0645-01A-01R-1849-01 NA
106 TCGA-06-0132-01A-02R-1849-01 NA
107 TCGA-32-5222-01A-01R-1850-01 NA
108 TCGA-12-0821-01A-01R-1849-01 NA
109 TCGA-41-3915-01A-01R-1850-01 NA
110 TCGA-06-0219-01A-01R-1849-01 NA
111 TCGA-19-4065-01A-01R-2005-01 NA
112 TCGA-06-2565-01A-01R-1849-01 NA
113 TCGA-06-0156-01A-03R-1849-01 NA
114 TCGA-06-0190-02A-01R-2005-01 NA
115 TCGA-06-0644-01A-02R-1849-01 NA
116 TCGA-06-0649-01B-01R-1849-01 NA
117 TCGA-06-5859-01A-01R-1849-01 NA
118 TCGA-06-5411-01A-01R-1849-01 NA
119 TCGA-12-5299-01A-02R-1849-01 NA
120 TCGA-06-0158-01A-01R-1849-01 NA
121 TCGA-28-2513-01A-01R-1850-01 NA
122 TCGA-12-0618-01A-01R-1849-01 NA
123 TCGA-26-5133-01A-01R-1850-01 NA
124 TCGA-27-2528-01A-01R-1850-01 NA
125 TCGA-06-0678-11A-32R-A36H-07 NA
126 TCGA-28-1747-01C-01R-1850-01 NA
127 TCGA-02-0055-01A-01R-1849-01 NA
128 TCGA-28-2509-01A-01R-1850-01 NA
129 TCGA-06-2559-01A-01R-1849-01 NA
130 TCGA-26-5139-01A-01R-1850-01 NA
131 TCGA-06-AABW-11A-31R-A36H-07 NA
132 TCGA-06-0747-01A-01R-1849-01 NA
133 TCGA-06-0178-01A-01R-1849-01 NA
134 TCGA-26-5134-01A-01R-1850-01 NA
135 TCGA-19-1787-01B-01R-1850-01 NA
136 TCGA-32-4213-01A-01R-1850-01 NA
137 TCGA-06-0125-02A-11R-2005-01 NA
138 TCGA-41-2571-01A-01R-1850-01 NA
139 TCGA-26-1442-01A-01R-1850-01 NA
140 TCGA-06-5417-01A-01R-1849-01 NA
141 TCGA-28-5215-01A-01R-1850-01 NA
142 TCGA-06-0138-01A-02R-1849-01 NA
143 TCGA-06-0675-11A-32R-A36H-07 NA
144 TCGA-19-2625-01A-01R-1850-01 NA
145 TCGA-06-5415-01A-01R-1849-01 NA
146 TCGA-27-2523-01A-01R-1850-01 NA
147 TCGA-28-2514-01A-02R-1850-01 NA
148 TCGA-41-5651-01A-01R-1850-01 NA
149 TCGA-14-0871-01A-01R-1849-01 NA
150 TCGA-12-3650-01A-01R-1849-01 NA
151 TCGA-06-0190-01A-01R-1849-01 NA
152 TCGA-32-2638-01A-01R-1850-01 NA
153 TCGA-27-1837-01A-01R-1850-01 NA
154 TCGA-27-2524-01A-01R-1850-01 NA
155 TCGA-27-2526-01A-01R-1850-01 NA
156 TCGA-19-2624-01A-01R-1850-01 NA
157 TCGA-06-2567-01A-01R-1849-01 NA
158 TCGA-06-0743-01A-01R-1849-01 NA
159 TCGA-27-2519-01A-01R-1850-01 NA
160 TCGA-06-0211-01A-01R-1849-01 NA
161 TCGA-02-2486-01A-01R-1849-01 NA
162 TCGA-28-2499-01A-01R-1850-01 NA
163 TCGA-16-0846-01A-01R-1850-01 NA
164 TCGA-19-2620-01A-01R-1850-01 NA
165 TCGA-27-1834-01A-01R-1850-01 NA
166 TCGA-06-0210-01A-01R-1849-01 NA
167 TCGA-32-1982-01A-01R-1850-01 NA
168 TCGA-19-1390-01A-01R-1850-01 NA
169 TCGA-28-5216-01A-01R-1850-01 NA
170 TCGA-19-2619-01A-01R-1850-01 NA
171 TCGA-76-4926-01B-01R-1850-01 NA
172 TCGA-06-0168-01A-01R-1849-01 NA
173 TCGA-19-2629-01A-01R-1850-01 NA
174 TCGA-12-3653-01A-01R-1849-01 NA
id md5sum
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7 030e6faf-c38d-434b-85fc-d9e1428fbfa2 7170ff05f874bdba667ae2e2b65bb66a
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12 36f8d0b4-a8b9-4749-9797-83f21befa3e8 22c56f0e1251d673696aeff2537b92ba
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updated_datetime data_format access platform state
1 2017-03-05T09:28:11.866514-06:00 TXT open Illumina HiSeq live
2 2017-03-05T12:32:21.948139-06:00 TXT open Illumina HiSeq live
3 2017-03-05T09:28:11.866514-06:00 TXT open Illumina HiSeq live
4 2017-03-05T16:32:41.678414-06:00 TXT open Illumina HiSeq live
5 2017-03-05T15:53:23.196940-06:00 TXT open Illumina HiSeq live
6 2017-03-05T10:32:39.821430-06:00 TXT open Illumina HiSeq live
7 2017-03-05T18:41:22.385391-06:00 TXT open Illumina HiSeq live
8 2017-03-05T10:28:32.800201-06:00 TXT open Illumina HiSeq live
9 2017-03-05T17:54:30.374523-06:00 TXT open Illumina HiSeq live
10 2017-03-05T11:45:49.056987-06:00 TXT open Illumina HiSeq live
11 2017-03-05T10:20:55.712590-06:00 TXT open Illumina HiSeq live
12 2017-03-05T18:45:56.407461-06:00 TXT open Illumina HiSeq live
13 2017-03-05T16:39:11.232851-06:00 TXT open Illumina HiSeq live
14 2017-03-05T11:00:22.460578-06:00 TXT open Illumina HiSeq live
15 2017-03-05T11:41:19.414807-06:00 TXT open Illumina HiSeq live
16 2017-03-05T18:41:55.941304-06:00 TXT open Illumina HiSeq live
17 2017-03-05T10:28:32.800201-06:00 TXT open Illumina HiSeq live
18 2017-03-05T18:30:48.399073-06:00 TXT open Illumina HiSeq live
19 2017-03-05T18:19:02.567447-06:00 TXT open Illumina HiSeq live
20 2017-03-05T18:27:40.906953-06:00 TXT open Illumina HiSeq live
21 2017-03-05T12:38:24.417825-06:00 TXT open Illumina HiSeq live
22 2017-03-05T11:47:51.010995-06:00 TXT open Illumina HiSeq live
23 2017-03-05T15:50:55.499996-06:00 TXT open Illumina HiSeq live
24 2017-03-05T18:29:39.863030-06:00 TXT open Illumina HiSeq live
25 2017-03-05T18:42:42.189892-06:00 TXT open Illumina HiSeq live
26 2017-03-05T10:38:33.898633-06:00 TXT open Illumina HiSeq live
27 2017-03-05T09:53:00.539003-06:00 TXT open Illumina HiSeq live
28 2017-03-05T11:45:49.056987-06:00 TXT open Illumina HiSeq live
29 2017-03-05T11:43:23.527902-06:00 TXT open Illumina HiSeq live
30 2017-03-05T10:23:36.058190-06:00 TXT open Illumina HiSeq live
31 2017-03-05T11:52:16.407482-06:00 TXT open Illumina HiSeq live
32 2017-03-05T18:43:10.862157-06:00 TXT open Illumina HiSeq live
33 2017-03-05T09:56:10.833727-06:00 TXT open Illumina HiSeq live
34 2017-03-05T11:39:23.380851-06:00 TXT open Illumina HiSeq live
35 2017-03-05T12:38:24.417825-06:00 TXT open Illumina HiSeq live
36 2017-03-05T16:36:51.059029-06:00 TXT open Illumina HiSeq live
37 2017-03-05T10:30:33.358047-06:00 TXT open Illumina HiSeq live
38 2017-03-05T16:43:46.428601-06:00 TXT open Illumina HiSeq live
39 2017-03-05T11:47:51.010995-06:00 TXT open Illumina HiSeq live
40 2017-03-05T11:34:30.601697-06:00 TXT open Illumina HiSeq live
41 2017-03-05T15:44:08.017054-06:00 TXT open Illumina HiSeq live
42 2017-03-05T16:32:41.678414-06:00 TXT open Illumina HiSeq live
43 2017-03-05T10:28:32.800201-06:00 TXT open Illumina HiSeq live
44 2017-03-05T11:13:47.143941-06:00 TXT open Illumina HiSeq live
45 2017-03-05T00:22:24.678827-06:00 TXT open Illumina HiSeq live
46 2017-03-05T09:28:11.866514-06:00 TXT open Illumina HiSeq live
47 2017-03-05T11:22:29.164094-06:00 TXT open Illumina HiSeq live
48 2017-03-05T00:13:31.705104-06:00 TXT open Illumina HiSeq live
49 2017-03-05T09:28:11.866514-06:00 TXT open Illumina HiSeq live
50 2017-03-05T00:19:24.867528-06:00 TXT open Illumina HiSeq live
51 2017-03-05T15:46:38.221013-06:00 TXT open Illumina HiSeq live
52 2017-03-05T17:54:30.374523-06:00 TXT open Illumina HiSeq live
53 2017-03-05T10:30:33.358047-06:00 TXT open Illumina HiSeq live
54 2017-03-05T10:14:24.092789-06:00 TXT open Illumina HiSeq live
55 2017-03-05T12:49:54.023431-06:00 TXT open Illumina HiSeq live
56 2017-03-05T17:56:42.163264-06:00 TXT open Illumina HiSeq live
57 2017-03-05T09:28:11.866514-06:00 TXT open Illumina HiSeq live
58 2017-03-05T17:54:30.374523-06:00 TXT open Illumina HiSeq live
59 2017-03-05T12:38:24.417825-06:00 TXT open Illumina HiSeq live
60 2017-03-05T11:11:41.221167-06:00 TXT open Illumina HiSeq live
61 2017-03-05T00:20:14.696060-06:00 TXT open Illumina HiSeq live
62 2017-03-05T10:35:50.249562-06:00 TXT open Illumina HiSeq live
63 2017-03-04T20:59:48.762309-06:00 TXT open Illumina HiSeq live
64 2017-03-05T09:28:11.866514-06:00 TXT open Illumina HiSeq live
65 2017-03-05T09:50:44.209498-06:00 TXT open Illumina HiSeq live
66 2017-03-05T11:18:26.999142-06:00 TXT open Illumina HiSeq live
67 2017-03-05T11:32:29.757610-06:00 TXT open Illumina HiSeq live
68 2017-03-05T16:32:41.678414-06:00 TXT open Illumina HiSeq live
69 2017-03-05T10:23:36.058190-06:00 TXT open Illumina HiSeq live
70 2017-03-05T10:02:52.055823-06:00 TXT open Illumina HiSeq live
71 2017-03-05T11:43:23.527902-06:00 TXT open Illumina HiSeq live
72 2017-03-05T18:20:31.987895-06:00 TXT open Illumina HiSeq live
73 2017-03-05T10:32:39.821430-06:00 TXT open Illumina HiSeq live
74 2017-03-05T10:38:33.898633-06:00 TXT open Illumina HiSeq live
75 2017-03-05T19:43:38.940493-06:00 TXT open Illumina HiSeq live
76 2017-03-05T00:16:07.527840-06:00 TXT open Illumina HiSeq live
77 2017-03-05T10:16:21.786738-06:00 TXT open Illumina HiSeq live
78 2017-03-04T20:47:52.066809-06:00 TXT open Illumina HiSeq live
79 2017-03-05T10:35:50.249562-06:00 TXT open Illumina HiSeq live
80 2017-03-05T10:11:44.298823-06:00 TXT open Illumina HiSeq live
81 2017-03-05T15:53:23.196940-06:00 TXT open Illumina HiSeq live
82 2017-03-05T11:15:50.435278-06:00 TXT open Illumina HiSeq live
83 2017-03-05T11:18:26.999142-06:00 TXT open Illumina HiSeq live
84 2017-03-04T20:45:58.658405-06:00 TXT open Illumina HiSeq live
85 2017-03-05T15:42:11.194973-06:00 TXT open Illumina HiSeq live
86 2017-03-05T17:49:51.224742-06:00 TXT open Illumina HiSeq live
87 2017-03-05T18:32:10.683343-06:00 TXT open Illumina HiSeq live
88 2017-03-05T11:29:36.677520-06:00 TXT open Illumina HiSeq live
89 2017-03-05T10:55:20.104396-06:00 TXT open Illumina HiSeq live
90 2017-03-04T20:50:29.506652-06:00 TXT open Illumina HiSeq live
91 2017-03-05T00:14:25.175879-06:00 TXT open Illumina HiSeq live
92 2017-03-05T16:34:46.014972-06:00 TXT open Illumina HiSeq live
93 2017-03-05T18:34:35.385663-06:00 TXT open Illumina HiSeq live
94 2017-03-05T10:50:24.201214-06:00 TXT open Illumina HiSeq live
95 2017-03-05T10:50:24.201214-06:00 TXT open Illumina HiSeq live
96 2017-03-05T09:53:00.539003-06:00 TXT open Illumina HiSeq live
97 2017-03-05T18:20:31.987895-06:00 TXT open Illumina HiSeq live
98 2017-03-05T10:25:29.699247-06:00 TXT open Illumina HiSeq live
99 2017-03-05T12:47:21.332359-06:00 TXT open Illumina HiSeq live
100 2017-03-05T09:58:17.073818-06:00 TXT open Illumina HiSeq live
101 2017-03-05T16:39:11.232851-06:00 TXT open Illumina HiSeq live
102 2017-03-05T10:45:24.435521-06:00 TXT open Illumina HiSeq live
103 2017-03-04T20:47:52.066809-06:00 TXT open Illumina HiSeq live
104 2017-03-05T10:20:55.712590-06:00 TXT open Illumina HiSeq live
105 2017-03-05T16:30:32.274191-06:00 TXT open Illumina HiSeq live
106 2017-03-05T12:42:46.256608-06:00 TXT open Illumina HiSeq live
107 2017-03-05T18:19:57.255497-06:00 TXT open Illumina HiSeq live
108 2017-03-05T12:40:24.187360-06:00 TXT open Illumina HiSeq live
109 2017-03-05T11:41:19.414807-06:00 TXT open Illumina HiSeq live
110 2017-03-05T16:39:11.232851-06:00 TXT open Illumina HiSeq live
111 2017-03-05T09:28:11.866514-06:00 TXT open Illumina HiSeq live
112 2017-03-05T10:20:55.712590-06:00 TXT open Illumina HiSeq live
113 2017-03-05T10:52:48.449603-06:00 TXT open Illumina HiSeq live
114 2017-03-05T11:39:23.380851-06:00 TXT open Illumina HiSeq live
115 2017-03-04T20:45:58.658405-06:00 TXT open Illumina HiSeq live
116 2017-03-05T16:34:46.014972-06:00 TXT open Illumina HiSeq live
117 2017-03-05T10:45:24.435521-06:00 TXT open Illumina HiSeq live
118 2017-03-05T12:38:24.417825-06:00 TXT open Illumina HiSeq live
119 2017-03-05T09:53:00.539003-06:00 TXT open Illumina HiSeq live
120 2017-03-05T10:02:52.055823-06:00 TXT open Illumina HiSeq live
121 2017-03-05T16:34:46.014972-06:00 TXT open Illumina HiSeq live
122 2017-03-05T00:13:31.705104-06:00 TXT open Illumina HiSeq live
123 2017-03-05T16:34:46.014972-06:00 TXT open Illumina HiSeq live
124 2017-03-05T17:49:51.224742-06:00 TXT open Illumina HiSeq live
125 2017-03-05T11:47:51.010995-06:00 TXT open Illumina HiSeq live
126 2017-03-04T20:45:58.658405-06:00 TXT open Illumina HiSeq live
127 2017-03-05T18:44:00.602578-06:00 TXT open Illumina HiSeq live
128 2017-03-05T12:42:46.256608-06:00 TXT open Illumina HiSeq live
129 2017-03-04T20:47:52.066809-06:00 TXT open Illumina HiSeq live
130 2017-03-05T18:04:13.853764-06:00 TXT open Illumina HiSeq live
131 2017-03-05T16:39:11.232851-06:00 TXT open Illumina HiSeq live
132 2017-03-05T18:16:47.993178-06:00 TXT open Illumina HiSeq live
133 2017-03-05T10:38:33.898633-06:00 TXT open Illumina HiSeq live
134 2017-03-05T11:45:49.056987-06:00 TXT open Illumina HiSeq live
135 2017-03-05T10:25:29.699247-06:00 TXT open Illumina HiSeq live
136 2017-03-05T16:41:59.983654-06:00 TXT open Illumina HiSeq live
137 2017-03-05T09:28:11.866514-06:00 TXT open Illumina HiSeq live
138 2017-03-05T00:13:31.705104-06:00 TXT open Illumina HiSeq live
139 2017-03-05T11:47:51.010995-06:00 TXT open Illumina HiSeq live
140 2017-03-05T11:43:23.527902-06:00 TXT open Illumina HiSeq live
141 2017-03-05T10:20:55.712590-06:00 TXT open Illumina HiSeq live
142 2017-03-05T10:00:46.579344-06:00 TXT open Illumina HiSeq live
143 2017-03-05T09:28:11.866514-06:00 TXT open Illumina HiSeq live
144 2017-03-05T18:34:24.307284-06:00 TXT open Illumina HiSeq live
145 2017-03-04T20:50:29.506652-06:00 TXT open Illumina HiSeq live
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148 2017-03-05T09:28:11.866514-06:00 TXT open Illumina HiSeq live
149 2017-03-05T10:20:55.712590-06:00 TXT open Illumina HiSeq live
150 2017-03-05T10:58:14.757612-06:00 TXT open Illumina HiSeq live
151 2017-03-05T11:22:29.164094-06:00 TXT open Illumina HiSeq live
152 2017-03-04T20:50:29.506652-06:00 TXT open Illumina HiSeq live
153 2017-03-05T10:25:29.699247-06:00 TXT open Illumina HiSeq live
154 2017-03-05T18:21:33.477406-06:00 TXT open Illumina HiSeq live
155 2017-03-05T10:35:50.249562-06:00 TXT open Illumina HiSeq live
156 2017-03-04T20:47:52.066809-06:00 TXT open Illumina HiSeq live
157 2017-03-05T11:11:41.221167-06:00 TXT open Illumina HiSeq live
158 2017-03-05T18:47:38.025443-06:00 TXT open Illumina HiSeq live
159 2017-03-05T15:50:55.499996-06:00 TXT open Illumina HiSeq live
160 2017-03-05T12:40:24.187360-06:00 TXT open Illumina HiSeq live
161 2017-03-05T11:34:30.601697-06:00 TXT open Illumina HiSeq live
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13 University of North Carolina UNC
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18 University of North Carolina UNC
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45 University of North Carolina UNC
46 University of North Carolina UNC
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49 University of North Carolina UNC
50 University of North Carolina UNC
51 University of North Carolina UNC
52 University of North Carolina UNC
53 University of North Carolina UNC
54 University of North Carolina UNC
55 University of North Carolina UNC
56 University of North Carolina UNC
57 University of North Carolina UNC
58 University of North Carolina UNC
59 University of North Carolina UNC
60 University of North Carolina UNC
61 University of North Carolina UNC
62 University of North Carolina UNC
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65 University of North Carolina UNC
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71 University of North Carolina UNC
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75 University of North Carolina UNC
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tissue.definition
1 Primary solid Tumor
2 Solid Tissue Normal
3 Recurrent Solid Tumor
4 Primary solid Tumor
5 Primary solid Tumor
6 Primary solid Tumor
7 Primary solid Tumor
8 Primary solid Tumor
9 Primary solid Tumor
10 Primary solid Tumor
11 Primary solid Tumor
12 Primary solid Tumor
13 Primary solid Tumor
14 Primary solid Tumor
15 Primary solid Tumor
16 Primary solid Tumor
17 Primary solid Tumor
18 Primary solid Tumor
19 Primary solid Tumor
20 Primary solid Tumor
21 Primary solid Tumor
22 Primary solid Tumor
23 Primary solid Tumor
24 Primary solid Tumor
25 Primary solid Tumor
26 Primary solid Tumor
27 Primary solid Tumor
28 Primary solid Tumor
29 Primary solid Tumor
30 Primary solid Tumor
31 Recurrent Solid Tumor
32 Primary solid Tumor
33 Primary solid Tumor
34 Primary solid Tumor
35 Primary solid Tumor
36 Primary solid Tumor
37 Primary solid Tumor
38 Primary solid Tumor
39 Primary solid Tumor
40 Recurrent Solid Tumor
41 Primary solid Tumor
42 Primary solid Tumor
43 Primary solid Tumor
44 Recurrent Solid Tumor
45 Primary solid Tumor
46 Primary solid Tumor
47 Recurrent Solid Tumor
48 Primary solid Tumor
49 Primary solid Tumor
50 Primary solid Tumor
51 Primary solid Tumor
52 Recurrent Solid Tumor
53 Primary solid Tumor
54 Primary solid Tumor
55 Primary solid Tumor
56 Primary solid Tumor
57 Primary solid Tumor
58 Primary solid Tumor
59 Primary solid Tumor
60 Solid Tissue Normal
61 Primary solid Tumor
62 Primary solid Tumor
63 Primary solid Tumor
64 Primary solid Tumor
65 Primary solid Tumor
66 Primary solid Tumor
67 Primary solid Tumor
68 Primary solid Tumor
69 Primary solid Tumor
70 Primary solid Tumor
71 Primary solid Tumor
72 Primary solid Tumor
73 Primary solid Tumor
74 Primary solid Tumor
75 Primary solid Tumor
76 Primary solid Tumor
77 Primary solid Tumor
78 Primary solid Tumor
79 Primary solid Tumor
80 Recurrent Solid Tumor
81 Primary solid Tumor
82 Primary solid Tumor
83 Primary solid Tumor
84 Recurrent Solid Tumor
85 Primary solid Tumor
86 Recurrent Solid Tumor
87 Recurrent Solid Tumor
88 Primary solid Tumor
89 Primary solid Tumor
90 Primary solid Tumor
91 Primary solid Tumor
92 Primary solid Tumor
93 Primary solid Tumor
94 Primary solid Tumor
95 Primary solid Tumor
96 Primary solid Tumor
97 Recurrent Solid Tumor
98 Primary solid Tumor
99 Primary solid Tumor
100 Primary solid Tumor
101 Primary solid Tumor
102 Primary solid Tumor
103 Primary solid Tumor
104 Primary solid Tumor
105 Primary solid Tumor
106 Primary solid Tumor
107 Primary solid Tumor
108 Primary solid Tumor
109 Primary solid Tumor
110 Primary solid Tumor
111 Primary solid Tumor
112 Primary solid Tumor
113 Primary solid Tumor
114 Recurrent Solid Tumor
115 Primary solid Tumor
116 Primary solid Tumor
117 Primary solid Tumor
118 Primary solid Tumor
119 Primary solid Tumor
120 Primary solid Tumor
121 Primary solid Tumor
122 Primary solid Tumor
123 Primary solid Tumor
124 Primary solid Tumor
125 Solid Tissue Normal
126 Primary solid Tumor
127 Primary solid Tumor
128 Primary solid Tumor
129 Primary solid Tumor
130 Primary solid Tumor
131 Solid Tissue Normal
132 Primary solid Tumor
133 Primary solid Tumor
134 Primary solid Tumor
135 Primary solid Tumor
136 Primary solid Tumor
137 Recurrent Solid Tumor
138 Primary solid Tumor
139 Primary solid Tumor
140 Primary solid Tumor
141 Primary solid Tumor
142 Primary solid Tumor
143 Solid Tissue Normal
144 Primary solid Tumor
145 Primary solid Tumor
146 Primary solid Tumor
147 Primary solid Tumor
148 Primary solid Tumor
149 Primary solid Tumor
150 Primary solid Tumor
151 Primary solid Tumor
152 Primary solid Tumor
153 Primary solid Tumor
154 Primary solid Tumor
155 Primary solid Tumor
156 Primary solid Tumor
157 Primary solid Tumor
158 Primary solid Tumor
159 Primary solid Tumor
160 Primary solid Tumor
161 Primary solid Tumor
162 Primary solid Tumor
163 Primary solid Tumor
164 Primary solid Tumor
165 Primary solid Tumor
166 Primary solid Tumor
167 Primary solid Tumor
168 Primary solid Tumor
169 Primary solid Tumor
170 Primary solid Tumor
171 Primary solid Tumor
172 Primary solid Tumor
173 Primary solid Tumor
174 Primary solid Tumor
Downloading data for project TCGA-GBM
GDCdownload will download 174 files. A total of 75.889411 MB
Downloading as: Tue_Apr_16_01_34_05_2019.tar.gz
|
| | 0%
|
|======================================================================| 100%
/bin/tar: This does not look like a tar archive
gzip: stdin: not in gzip format
/bin/tar: Child returned status 1
/bin/tar: Error is not recoverable: exiting now
Download completed
Error in GDCprepare(query) :
I couldn't find all the files from the query. Please check if the directory parameter is right or `GDCdownload` downloaded the samples.
Calls: getData -> TCGAdownload -> GDCprepare
Execution halted
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘runTests.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 ERROR
See
‘/home/biocbuild/bbs-3.8-bioc/meat/miRLAB.Rcheck/00check.log’
for details.
