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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/mixOmics_6.6.2.tar.gz && rm -rf mixOmics.buildbin-libdir && mkdir mixOmics.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=mixOmics.buildbin-libdir mixOmics_6.6.2.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL mixOmics_6.6.2.zip && rm mixOmics_6.6.2.tar.gz mixOmics_6.6.2.zip
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install for i386
* installing *source* package 'mixOmics' ...
files 'R/MCVfold.R', 'R/multilevel.R', 'R/plotContrib.R', 'R/scatterutil.R', 'R/tune.multilevel.R', 'man/multilevel.Rd', 'man/plotContrib.Rd', 'man/scatterutil.Rd', 'man/tune.multilevel.Rd' are missing
files 'DESCRIPTION', 'NAMESPACE', 'NEWS', 'R/LOGOCV.R', 'R/bin.color.R', 'R/block.pls.R', 'R/block.plsda.R', 'R/block.spls.R', 'R/block.splsda.R', 'R/check_entry.R', 'R/cim.R', 'R/cimDiablo.R', 'R/circosPlot.R', 'R/color.GreenRed.R', 'R/color.jet.R', 'R/color.mixo.R', 'R/color.spectral.R', 'R/explained_variance.R', 'R/ica.def.par.R', 'R/image.tune.rcc.R', 'R/imageMap.R', 'R/imgCor.R', 'R/internal_graphicModule.R', 'R/internal_mint.block.R', 'R/internal_mint.block_helpers.R', 'R/internal_predict.DA.R', 'R/internal_wrapper.mint.R', 'R/internal_wrapper.mint.block.R', 'R/mat.rank.R', 'R/mint.block.pls.R', 'R/mint.block.plsda.R', 'R/mint.block.spls.R', 'R/mint.block.splsda.R', 'R/mint.pls.R', 'R/mint.plsda.R', 'R/mint.spls.R', 'R/mint.splsda.R', 'R/mixOmics.R', 'R/network.R', 'R/nipals.R', 'R/pca.R', 'R/pcasvd.R', 'R/perf.R', 'R/perf.diablo.R', 'R/perf.mint.splsda.R', 'R/plot.pca.R', 'R/plot.perf.R', 'R/plotArrow.R', 'R/plotDiablo.R', 'R/plotIndiv.R', 'R/plotIndiv.mint.R', 'R/plotIndiv.pca.R', 'R/plotIndiv.pls.R', 'R/plotIndiv.sgcca.R', 'R/plotLoadings.R', 'R/plotLoadings.mint.spls.R', 'R/plotLoadings.mint.splsda.R', 'R/plotLoadings.spls.R', 'R/plotLoadings.splsda.R', 'R/plotVar.R', 'R/pls.R', 'R/plsda.R', 'R/predict.mint.block.pls.R', 'R/print.methods.R', 'R/selectVar.R', 'R/sipca.R', 'R/spca.R', 'R/spls.R', 'R/splsda.R', 'R/summary.R', 'R/tune.R', 'R/tune.mint.splsda.R', 'R/tune.rcc.R', 'R/tune.splsda.R', 'R/tune.splslevel.R', 'R/vip.R', 'R/wrapper.ilr.R', 'R/wrapper.rgcca.R', 'R/wrapper.sgcca.R', 'R/zzz.R', 'data/Koren.16S.rda', 'data/datalist', 'data/diverse.16S.rda', 'data/vac18.simulated.rda', 'man/Koren.16S.Rd', 'man/block.pls.Rd', 'man/block.plsda.Rd', 'man/block.spls.Rd', 'man/block.splsda.Rd', 'man/breast.TCGA.Rd', 'man/breast.tumors.Rd', 'man/cim.Rd', 'man/cimDiablo.Rd', 'man/circosPlot.Rd', 'man/colors.Rd', 'man/diverse.16S.Rd', 'man/estim.regul.Rd', 'man/explained_variance.Rd', 'man/image.estim.regul.Rd', 'man/image.tune.rcc.Rd', 'man/imgCor.Rd', 'man/ipca.Rd', 'man/linnerud.Rd', 'man/liver.toxicity.Rd', 'man/logratio.transfo.Rd', 'man/map.Rd', 'man/mat.rank.Rd', 'man/mint.block.pls.Rd', 'man/mint.block.plsda.Rd', 'man/mint.block.spls.Rd', 'man/mint.block.splsda.Rd', 'man/mint.pls.Rd', 'man/mint.plsda.Rd', 'man/mint.spls.Rd', 'man/mint.splsda.Rd', 'man/mixOmics.Rd', 'man/multidrug.Rd', 'man/nearZeroVar.Rd', 'man/network.Rd', 'man/nipals.Rd', 'man/nutrimouse.Rd', 'man/pca.Rd', 'man/pcatune.Rd', 'man/perf.Rd', 'man/plot.perf.Rd', 'man/plot.rcc.Rd', 'man/plotArrow.Rd', 'man/plotDiablo.Rd', 'man/plotIndiv.Rd', 'man/plotLoadings.Rd', 'man/plotVar.Rd', 'man/pls.Rd', 'man/plsda.Rd', 'man/predict.Rd', 'man/print.methods.Rd', 'man/rcc.Rd', 'man/selectVar.Rd', 'man/sipca.Rd', 'man/spca.Rd', 'man/spls.Rd', 'man/splsda.Rd', 'man/srbct.Rd', 'man/stemcells.Rd', 'man/study_split.Rd', 'man/summary.Rd', 'man/tune.Rd', 'man/tune.mint.splsda.Rd', 'man/tune.pca.Rd', 'man/tune.rcc.Rd', 'man/tune.splsda.Rd', 'man/unmap.Rd', 'man/vac18.Rd', 'man/vac18.simulated.Rd', 'man/vip.Rd', 'man/withinVariation.Rd', 'man/wrapper.rgcca.Rd', 'man/wrapper.sgcca.Rd', 'man/yeast.Rd' have the wrong MD5 checksums
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'mixOmics'
finding HTML links ... done
Koren.16S html
auroc html
background.predict html
block.pls html
block.plsda html
block.spls html
block.splsda html
breast.TCGA html
breast.tumors html
cim html
cimDiablo html
circosPlot html
colors html
diverse.16S html
estim.regul html
explained_variance html
get.confusion_matrix html
image.estim.regul html
image.tune.rcc html
imgCor html
ipca html
linnerud html
liver.toxicity html
logratio.transfo html
map html
mat.rank html
mint.block.pls html
mint.block.plsda html
mint.block.spls html
mint.block.splsda html
mint.pca html
mint.pls html
mint.plsda html
mint.spls html
mint.splsda html
mixOmics html
multidrug html
nearZeroVar html
network html
nipals html
nutrimouse html
pca html
pcatune html
perf html
plot.perf html
plot.rcc html
plot.tune html
plotArrow html
plotDiablo html
plotIndiv html
plotLoadings html
plotVar html
pls html
plsda html
predict html
print.methods html
rcc html
selectVar html
sipca html
spca html
spls html
splsda html
srbct html
stemcells html
study_split html
summary html
tune html
tune.block.splsda html
tune.mint.splsda html
tune.pca html
tune.rcc html
tune.spls html
tune.splsda html
tune.splslevel html
unmap html
vac18 html
vac18.simulated html
vip html
withinVariation html
wrapper.rgcca html
wrapper.sgcca html
yeast html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'mixOmics' ...
files 'R/MCVfold.R', 'R/multilevel.R', 'R/plotContrib.R', 'R/scatterutil.R', 'R/tune.multilevel.R', 'man/multilevel.Rd', 'man/plotContrib.Rd', 'man/scatterutil.Rd', 'man/tune.multilevel.Rd' are missing
files 'DESCRIPTION', 'NAMESPACE', 'NEWS', 'R/LOGOCV.R', 'R/bin.color.R', 'R/block.pls.R', 'R/block.plsda.R', 'R/block.spls.R', 'R/block.splsda.R', 'R/check_entry.R', 'R/cim.R', 'R/cimDiablo.R', 'R/circosPlot.R', 'R/color.GreenRed.R', 'R/color.jet.R', 'R/color.mixo.R', 'R/color.spectral.R', 'R/explained_variance.R', 'R/ica.def.par.R', 'R/image.tune.rcc.R', 'R/imageMap.R', 'R/imgCor.R', 'R/internal_graphicModule.R', 'R/internal_mint.block.R', 'R/internal_mint.block_helpers.R', 'R/internal_predict.DA.R', 'R/internal_wrapper.mint.R', 'R/internal_wrapper.mint.block.R', 'R/mat.rank.R', 'R/mint.block.pls.R', 'R/mint.block.plsda.R', 'R/mint.block.spls.R', 'R/mint.block.splsda.R', 'R/mint.pls.R', 'R/mint.plsda.R', 'R/mint.spls.R', 'R/mint.splsda.R', 'R/mixOmics.R', 'R/network.R', 'R/nipals.R', 'R/pca.R', 'R/pcasvd.R', 'R/perf.R', 'R/perf.diablo.R', 'R/perf.mint.splsda.R', 'R/plot.pca.R', 'R/plot.perf.R', 'R/plotArrow.R', 'R/plotDiablo.R', 'R/plotIndiv.R', 'R/plotIndiv.mint.R', 'R/plotIndiv.pca.R', 'R/plotIndiv.pls.R', 'R/plotIndiv.sgcca.R', 'R/plotLoadings.R', 'R/plotLoadings.mint.spls.R', 'R/plotLoadings.mint.splsda.R', 'R/plotLoadings.spls.R', 'R/plotLoadings.splsda.R', 'R/plotVar.R', 'R/pls.R', 'R/plsda.R', 'R/predict.mint.block.pls.R', 'R/print.methods.R', 'R/selectVar.R', 'R/sipca.R', 'R/spca.R', 'R/spls.R', 'R/splsda.R', 'R/summary.R', 'R/tune.R', 'R/tune.mint.splsda.R', 'R/tune.rcc.R', 'R/tune.splsda.R', 'R/tune.splslevel.R', 'R/vip.R', 'R/wrapper.ilr.R', 'R/wrapper.rgcca.R', 'R/wrapper.sgcca.R', 'R/zzz.R', 'data/Koren.16S.rda', 'data/datalist', 'data/diverse.16S.rda', 'data/vac18.simulated.rda', 'man/Koren.16S.Rd', 'man/block.pls.Rd', 'man/block.plsda.Rd', 'man/block.spls.Rd', 'man/block.splsda.Rd', 'man/breast.TCGA.Rd', 'man/breast.tumors.Rd', 'man/cim.Rd', 'man/cimDiablo.Rd', 'man/circosPlot.Rd', 'man/colors.Rd', 'man/diverse.16S.Rd', 'man/estim.regul.Rd', 'man/explained_variance.Rd', 'man/image.estim.regul.Rd', 'man/image.tune.rcc.Rd', 'man/imgCor.Rd', 'man/ipca.Rd', 'man/linnerud.Rd', 'man/liver.toxicity.Rd', 'man/logratio.transfo.Rd', 'man/map.Rd', 'man/mat.rank.Rd', 'man/mint.block.pls.Rd', 'man/mint.block.plsda.Rd', 'man/mint.block.spls.Rd', 'man/mint.block.splsda.Rd', 'man/mint.pls.Rd', 'man/mint.plsda.Rd', 'man/mint.spls.Rd', 'man/mint.splsda.Rd', 'man/mixOmics.Rd', 'man/multidrug.Rd', 'man/nearZeroVar.Rd', 'man/network.Rd', 'man/nipals.Rd', 'man/nutrimouse.Rd', 'man/pca.Rd', 'man/pcatune.Rd', 'man/perf.Rd', 'man/plot.perf.Rd', 'man/plot.rcc.Rd', 'man/plotArrow.Rd', 'man/plotDiablo.Rd', 'man/plotIndiv.Rd', 'man/plotLoadings.Rd', 'man/plotVar.Rd', 'man/pls.Rd', 'man/plsda.Rd', 'man/predict.Rd', 'man/print.methods.Rd', 'man/rcc.Rd', 'man/selectVar.Rd', 'man/sipca.Rd', 'man/spca.Rd', 'man/spls.Rd', 'man/splsda.Rd', 'man/srbct.Rd', 'man/stemcells.Rd', 'man/study_split.Rd', 'man/summary.Rd', 'man/tune.Rd', 'man/tune.mint.splsda.Rd', 'man/tune.pca.Rd', 'man/tune.rcc.Rd', 'man/tune.splsda.Rd', 'man/unmap.Rd', 'man/vac18.Rd', 'man/vac18.simulated.Rd', 'man/vip.Rd', 'man/withinVariation.Rd', 'man/wrapper.rgcca.Rd', 'man/wrapper.sgcca.Rd', 'man/yeast.Rd' have the wrong MD5 checksums
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'mixOmics' as mixOmics_6.6.2.zip
* DONE (mixOmics)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'mixOmics' successfully unpacked and MD5 sums checked
In R CMD INSTALL
