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###
### Running command:
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### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL mlm4omics
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* installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’
* installing *source* package ‘mlm4omics’ ...
** libs
"/home/biocbuild/bbs-3.8-bioc/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/mmlm_code.stan
Wrote C++ file "stan_files/mmlm_code.cc"
g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I"../inst/include" -I"`"/home/biocbuild/bbs-3.8-bioc/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_RESULT_OF_USE_TR1 -DBOOST_NO_DECLTYPE -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -DBOOST_MATH_OVERFLOW_ERROR_POLICY=errno_on_error -I"/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include" -I"/home/biocbuild/bbs-3.8-bioc/R/library/rstan/include" -I"/home/biocbuild/bbs-3.8-bioc/R/library/BH/include" -I"/home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.8-bioc/R/library/RcppEigen/include" -I/usr/local/include -fpic -g -O2 -Wall -c stan_files/mmlm_code.cc -o stan_files/mmlm_code.o
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/core/gevv_vvv_vari.hpp:5:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/core.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/core/var.hpp:56:3: warning: identifier ‘nullptr’ is a keyword in C++11 [-Wc++0x-compat]
bool is_uninitialized() { return (vi_ == static_cast<vari*>(nullptr)); }
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_multiply.hpp:5:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:162,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:20:3: warning: identifier ‘constexpr’ is a keyword in C++11 [-Wc++0x-compat]
static constexpr int p_max = 8;
^
In file included from /usr/include/c++/5/thread:35:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:13,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:262,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/usr/include/c++/5/bits/c++0x_warning.h:32:2: error: #error This file requires compiler and library support for the ISO C++ 2011 standard. This support must be enabled with the -std=c++11 or -std=gnu++11 compiler options.
#error This file requires compiler and library support \
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/exp_sinh.hpp:21:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:43,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/exp_sinh_detail.hpp:44:5: warning: identifier ‘decltype’ is a keyword in C++11 [-Wc++0x-compat]
auto integrate(const F& f, Real* error, Real* L1, const char* function, Real tolerance, std::size_t* levels)->decltype(std::declval<F>()(std::declval<Real>())) const;
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/random/detail/integer_log2.hpp:19:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/random/detail/large_arithmetic.hpp:19,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/random/detail/const_mod.hpp:23,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/random/linear_congruential.hpp:30,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/random/additive_combine.hpp:27,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:15,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/pending/integer_log2.hpp:7:89: note: #pragma message: This header is deprecated. Use <boost/integer/integer_log2.hpp> instead.
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/core/autodiffstackstorage.hpp:4:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/core.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/memory/stack_alloc.hpp: In destructor ‘stan::math::stack_alloc::˜stack_alloc()’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/memory/stack_alloc.hpp:145:10: warning: ‘auto’ changes meaning in C++11; please remove it [-Wc++0x-compat]
for (auto& block : blocks_)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/memory/stack_alloc.hpp:145:16: error: ISO C++ forbids declaration of ‘block’ with no type [-fpermissive]
for (auto& block : blocks_)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/memory/stack_alloc.hpp:145:24: warning: range-based ‘for’ loops only available with -std=c++11 or -std=gnu++11
for (auto& block : blocks_)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/memory/stack_alloc.hpp:147:19: error: invalid conversion from ‘int’ to ‘void*’ [-fpermissive]
free(block);
^
In file included from /usr/include/c++/5/cstdlib:72:0,
from /home/biocbuild/bbs-3.8-bioc/R/include/R.h:47,
from /home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include/Rcpp/r/headers.h:63,
from /home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include/RcppCommon.h:29,
from /home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include/Rcpp.h:27,
from stan_files/mmlm_code.cc:1:
/usr/include/stdlib.h:483:13: note: initializing argument 1 of ‘void free(void*)’
extern void free (void *__ptr) __THROW;
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/core.hpp:4:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/core/autodiffstackstorage.hpp: At global scope:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/core/autodiffstackstorage.hpp:47:69: warning: defaulted and deleted functions only available with -std=c++11 or -std=gnu++11
AutodiffStackStorage &operator=(const AutodiffStackStorage &) = delete;
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/core/autodiffstackstorage.hpp:60:30: warning: defaulted and deleted functions only available with -std=c++11 or -std=gnu++11
AutodiffStackSingleton() = delete;
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/core/autodiffstackstorage.hpp:61:71: warning: defaulted and deleted functions only available with -std=c++11 or -std=gnu++11
explicit AutodiffStackSingleton(AutodiffStackSingleton_t const &) = delete;
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/core/autodiffstackstorage.hpp:62:73: warning: defaulted and deleted functions only available with -std=c++11 or -std=gnu++11
AutodiffStackSingleton &operator=(const AutodiffStackSingleton_t &) = delete;
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/core/gevv_vvv_vari.hpp:5:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/core.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/core/var.hpp: In member function ‘bool stan::math::var::is_uninitialized()’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/core/var.hpp:56:63: error: ‘nullptr’ was not declared in this scope
bool is_uninitialized() { return (vi_ == static_cast<vari*>(nullptr)); }
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/core/var.hpp: In function ‘std::ostream& stan::math::operator<<(std::ostream&, const stan::math::var&)’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/core/var.hpp:473:18: error: ‘nullptr’ was not declared in this scope
if (v.vi_ == nullptr)
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/core.hpp:42:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/core/recover_memory.hpp: In function ‘void stan::math::recover_memory()’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/core/recover_memory.hpp:25:8: warning: ‘auto’ changes meaning in C++11; please remove it [-Wc++0x-compat]
for (auto &x : ChainableStack::instance().var_alloc_stack_) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/core/recover_memory.hpp:25:14: error: ISO C++ forbids declaration of ‘x’ with no type [-fpermissive]
for (auto &x : ChainableStack::instance().var_alloc_stack_) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/core/recover_memory.hpp:25:18: warning: range-based ‘for’ loops only available with -std=c++11 or -std=gnu++11
for (auto &x : ChainableStack::instance().var_alloc_stack_) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/core/recover_memory.hpp:26:12: error: type ‘int’ argument given to ‘delete’, expected pointer
delete x;
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/core.hpp:44:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp: In function ‘void stan::math::set_zero_all_adjoints()’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:15:8: warning: ‘auto’ changes meaning in C++11; please remove it [-Wc++0x-compat]
for (auto &x : ChainableStack::instance().var_stack_)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:15:14: error: ISO C++ forbids declaration of ‘x’ with no type [-fpermissive]
for (auto &x : ChainableStack::instance().var_stack_)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:15:18: warning: range-based ‘for’ loops only available with -std=c++11 or -std=gnu++11
for (auto &x : ChainableStack::instance().var_stack_)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:16:6: error: base operand of ‘->’ is not a pointer
x->set_zero_adjoint();
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:17:8: warning: ‘auto’ changes meaning in C++11; please remove it [-Wc++0x-compat]
for (auto &x : ChainableStack::instance().var_nochain_stack_)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:17:14: error: ISO C++ forbids declaration of ‘x’ with no type [-fpermissive]
for (auto &x : ChainableStack::instance().var_nochain_stack_)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:17:18: warning: range-based ‘for’ loops only available with -std=c++11 or -std=gnu++11
for (auto &x : ChainableStack::instance().var_nochain_stack_)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:18:6: error: base operand of ‘->’ is not a pointer
x->set_zero_adjoint();
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:22:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/meta/operands_and_partials.hpp: At global scope:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/meta/operands_and_partials.hpp:19:56: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
class ops_partials_edge<ViewElt, Eigen::Matrix<Op, R, C>> {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/meta/operands_and_partials.hpp:19:56: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/meta/operands_and_partials.hpp:19:56: error: template argument 3 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/meta/operands_and_partials.hpp:19:56: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/meta/operands_and_partials.hpp:19:56: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/meta/operands_and_partials.hpp:19:59: warning: extended initializer lists only available with -std=c++11 or -std=gnu++11
class ops_partials_edge<ViewElt, Eigen::Matrix<Op, R, C>> {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/meta/operands_and_partials.hpp:19:41: error: template argument 2 is invalid
class ops_partials_edge<ViewElt, Eigen::Matrix<Op, R, C>> {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/meta/operands_and_partials.hpp:38:68: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
class ops_partials_edge<ViewElt, std::vector<Eigen::Matrix<Op, R, C>>> {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/meta/operands_and_partials.hpp:38:68: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/meta/operands_and_partials.hpp:38:70: error: template argument 3 is invalid
class ops_partials_edge<ViewElt, std::vector<Eigen::Matrix<Op, R, C>>> {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/meta/operands_and_partials.hpp:38:70: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/meta/operands_and_partials.hpp:38:70: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/meta/operands_and_partials.hpp:38:72: warning: extended initializer lists only available with -std=c++11 or -std=gnu++11
class ops_partials_edge<ViewElt, std::vector<Eigen::Matrix<Op, R, C>>> {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/meta/operands_and_partials.hpp:38:53: error: template argument 1 is invalid
class ops_partials_edge<ViewElt, std::vector<Eigen::Matrix<Op, R, C>>> {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/meta/operands_and_partials.hpp:38:53: error: template argument 2 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/meta/operands_and_partials.hpp:38:72: warning: extended initializer lists only available with -std=c++11 or -std=gnu++11
class ops_partials_edge<ViewElt, std::vector<Eigen::Matrix<Op, R, C>>> {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/meta/operands_and_partials.hpp:38:39: error: template argument 2 is invalid
class ops_partials_edge<ViewElt, std::vector<Eigen::Matrix<Op, R, C>>> {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/meta/operands_and_partials.hpp:56:60: error: ‘>>’ should be ‘> >’ within a nested template argument list
class ops_partials_edge<ViewElt, std::vector<std::vector<Op>>> {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/meta/operands_and_partials.hpp:58:68: error: ‘>>’ should be ‘> >’ within a nested template argument list
typedef empty_broadcast_array<ViewElt, std::vector<std::vector<Op>>>
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/meta/operands_and_partials.hpp:61:63: error: ‘>>’ should be ‘> >’ within a nested template argument list
empty_broadcast_array<partials_t, std::vector<std::vector<Op>>> partials_vec_;
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/meta/operands_and_partials.hpp:63:62: error: ‘>>’ should be ‘> >’ within a nested template argument list
explicit ops_partials_edge(const std::vector<std::vector<Op>> ops) {}
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:99:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/csr_matrix_times_vector.hpp: In function ‘Eigen::Matrix<typename boost::math::tools::promote_args<RT1, RT2>::type, -1, 1> stan::math::csr_matrix_times_vector(int, int, const Eigen::Matrix<Scalar, -1, 1>&, const std::vector<int>&, const std::vector<int>&, const Eigen::Matrix<RhsScalar, -1, 1>&)’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/csr_matrix_times_vector.hpp:91:16: warning: range-based ‘for’ loops only available with -std=c++11 or -std=gnu++11
for (int i : v)
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:100:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/csr_to_dense_matrix.hpp: In function ‘Eigen::Matrix<LhsScalar, -1, -1, 0> stan::math::csr_to_dense_matrix(int, int, const Eigen::Matrix<Scalar, -1, 1>&, const std::vector<int>&, const std::vector<int>&)’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/csr_to_dense_matrix.hpp:48:16: warning: range-based ‘for’ loops only available with -std=c++11 or -std=gnu++11
for (int i : v)
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/gp_dot_prod_cov.hpp:11:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:131,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/dot_product.hpp: At global scope:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/dot_product.hpp:85:42: error: ‘nullptr’ was not declared in this scope
vari** shared = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/dot_product.hpp:97:42: error: ‘nullptr’ was not declared in this scope
vari** shared = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/dot_product.hpp:109:43: error: ‘nullptr’ was not declared in this scope
double* shared = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/dot_product.hpp:121:43: error: ‘nullptr’ was not declared in this scope
double* shared = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/dot_product.hpp: In member function ‘void stan::math::{anonymous}::dot_product_vari<T1, T2>::initialize(stan::math::vari**&, const stan::math::var*, stan::math::vari**)’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/dot_product.hpp:86:19: error: ‘nullptr’ was not declared in this scope
if (shared == nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/dot_product.hpp: In member function ‘void stan::math::{anonymous}::dot_product_vari<T1, T2>::initialize(stan::math::vari**&, const Eigen::DenseBase<OtherDerived>&, stan::math::vari**)’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/dot_product.hpp:98:19: error: ‘nullptr’ was not declared in this scope
if (shared == nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/dot_product.hpp: In member function ‘void stan::math::{anonymous}::dot_product_vari<T1, T2>::initialize(double*&, const double*, double*)’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/dot_product.hpp:110:19: error: ‘nullptr’ was not declared in this scope
if (shared == nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/dot_product.hpp: In member function ‘void stan::math::{anonymous}::dot_product_vari<T1, T2>::initialize(double*&, const Eigen::DenseBase<OtherDerived>&, double*)’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/dot_product.hpp:122:19: error: ‘nullptr’ was not declared in this scope
if (shared == nullptr) {
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:156:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/log_mix.hpp: In function ‘typename stan::return_type<T_theta, std::vector<Eigen::Matrix<OpElt, R, C> > >::type stan::math::log_mix(const T_theta&, const std::vector<Eigen::Matrix<OpElt, R, C> >&)’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/log_mix.hpp:178:67: warning: lambda expressions only available with -std=c++11 or -std=gnu++11
.unaryExpr([](T_partials_return x) { return exp(x); });
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/log_mix.hpp: In function ‘typename stan::return_type<T_theta, std::vector<std::vector<T2> > >::type stan::math::log_mix(const T_theta&, const std::vector<std::vector<T2> >&)’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/log_mix.hpp:262:65: warning: lambda expressions only available with -std=c++11 or -std=gnu++11
.unaryExpr([](T_partials_return x) { return exp(x); });
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp.hpp:5:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:161,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_2x2.hpp: In function ‘Mtype stan::math::matrix_exp_2x2(const Mtype&)’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_2x2.hpp:21:9: error: expected nested-name-specifier before ‘T’
using T = typename Mtype::Scalar;
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_2x2.hpp:22:3: error: ‘T’ was not declared in this scope
T a = A(0, 0), b = A(0, 1), c = A(1, 0), d = A(1, 1), delta;
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_2x2.hpp:23:3: error: ‘delta’ was not declared in this scope
delta = sqrt(square(a - d) + 4 * b * c);
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_2x2.hpp:23:23: error: ‘a’ was not declared in this scope
delta = sqrt(square(a - d) + 4 * b * c);
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_2x2.hpp:23:27: error: ‘d’ was not declared in this scope
delta = sqrt(square(a - d) + 4 * b * c);
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_2x2.hpp:23:36: error: ‘b’ was not declared in this scope
delta = sqrt(square(a - d) + 4 * b * c);
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_2x2.hpp:23:40: error: ‘c’ was not declared in this scope
delta = sqrt(square(a - d) + 4 * b * c);
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_2x2.hpp:25:50: error: type/value mismatch at argument 1 in template parameter list for ‘template<class _Scalar, int _Rows, int _Cols, int _Options, int _MaxRows, int _MaxCols> class Eigen::Matrix’
Eigen::Matrix<T, Eigen::Dynamic, Eigen::Dynamic> B(2, 2);
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_2x2.hpp:25:50: note: expected a type, got ‘T’
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_2x2.hpp:25:58: error: expression list treated as compound expression in initializer [-fpermissive]
Eigen::Matrix<T, Eigen::Dynamic, Eigen::Dynamic> B(2, 2);
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_2x2.hpp:26:5: error: expected ‘;’ before ‘half_delta’
T half_delta = 0.5 * delta;
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_2x2.hpp:27:5: error: expected ‘;’ before ‘cosh_half_delta’
T cosh_half_delta = cosh(half_delta);
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_2x2.hpp:28:5: error: expected ‘;’ before ‘sinh_half_delta’
T sinh_half_delta = sinh(half_delta);
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_2x2.hpp:29:5: error: expected ‘;’ before ‘exp_half_a_plus_d’
T exp_half_a_plus_d = exp(0.5 * (a + d));
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_2x2.hpp:30:5: error: expected ‘;’ before ‘Two_exp_sinh’
T Two_exp_sinh = 2 * exp_half_a_plus_d * sinh_half_delta;
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_2x2.hpp:31:5: error: expected ‘;’ before ‘delta_cosh’
T delta_cosh = delta * cosh_half_delta;
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_2x2.hpp:32:5: error: expected ‘;’ before ‘ad_sinh_half_delta’
T ad_sinh_half_delta = (a - d) * sinh_half_delta;
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_2x2.hpp:34:9: error: ‘B’ cannot be used as a function
B(0, 0) = exp_half_a_plus_d * (delta_cosh + ad_sinh_half_delta);
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_2x2.hpp:34:13: error: ‘exp_half_a_plus_d’ was not declared in this scope
B(0, 0) = exp_half_a_plus_d * (delta_cosh + ad_sinh_half_delta);
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_2x2.hpp:34:34: error: ‘delta_cosh’ was not declared in this scope
B(0, 0) = exp_half_a_plus_d * (delta_cosh + ad_sinh_half_delta);
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_2x2.hpp:34:47: error: ‘ad_sinh_half_delta’ was not declared in this scope
B(0, 0) = exp_half_a_plus_d * (delta_cosh + ad_sinh_half_delta);
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_2x2.hpp:35:9: error: ‘B’ cannot be used as a function
B(0, 1) = b * Two_exp_sinh;
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_2x2.hpp:35:17: error: ‘Two_exp_sinh’ was not declared in this scope
B(0, 1) = b * Two_exp_sinh;
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_2x2.hpp:36:9: error: ‘B’ cannot be used as a function
B(1, 0) = c * Two_exp_sinh;
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_2x2.hpp:37:9: error: ‘B’ cannot be used as a function
B(1, 1) = exp_half_a_plus_d * (delta_cosh - ad_sinh_half_delta);
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_multiply.hpp:5:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:162,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp: At global scope:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:20:10: error: ‘constexpr’ does not name a type
static constexpr int p_max = 8;
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:20:10: note: C++11 ‘constexpr’ only available with -std=c++11 or -std=gnu++11
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:21:10: error: ‘constexpr’ does not name a type
static constexpr int m_max = 55;
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:21:10: note: C++11 ‘constexpr’ only available with -std=c++11 or -std=gnu++11
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:22:10: error: ‘constexpr’ does not name a type
static constexpr double tol = 1.1e-16;
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:22:10: note: C++11 ‘constexpr’ only available with -std=c++11 or -std=gnu++11
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:27:41: warning: non-static data member initializers only available with -std=c++11 or -std=gnu++11
7.7e0, 9.1e0, 1.1e1, 1.2e1, 1.3e1};
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:30:43: warning: non-static data member initializers only available with -std=c++11 or -std=gnu++11
4.7e0, 6.0e0, 7.2e0, 8.5e0, 9.9e0};
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:25:53: warning: extended initializer lists only available with -std=c++11 or -std=gnu++11
const std::vector<double> theta_m_single_precision{
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:27:41: warning: extended initializer lists only available with -std=c++11 or -std=gnu++11
7.7e0, 9.1e0, 1.1e1, 1.2e1, 1.3e1};
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:27:41: error: could not convert ‘{1.3e-1, 1.0e+0, 2.2000000000000002e+0, 3.6000000000000001e+0, 4.9000000000000004e+0, 6.2999999999999998e+0, 7.7000000000000002e+0, 9.0999999999999996e+0, 1.1e+1, 1.2e+1, 1.3e+1}’ from ‘<brace-enclosed initializer list>’ to ‘const std::vector<double>’
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:28:53: warning: extended initializer lists only available with -std=c++11 or -std=gnu++11
const std::vector<double> theta_m_double_precision{
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:30:43: warning: extended initializer lists only available with -std=c++11 or -std=gnu++11
4.7e0, 6.0e0, 7.2e0, 8.5e0, 9.9e0};
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:30:43: error: could not convert ‘{2.3999999999999998e-3, 1.4000000000000001e-1, 6.4000000000000001e-1, 1.3999999999999999e+0, 2.3999999999999999e+0, 3.5e+0, 4.7000000000000002e+0, 6.0e+0, 7.2000000000000002e+0, 8.5e+0, 9.9000000000000004e+0}’ from ‘<brace-enclosed initializer list>’ to ‘const std::vector<double>’
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp: In member function ‘Eigen::MatrixXd stan::math::matrix_exp_action_handler::action(const MatrixXd&, const MatrixXd&, const double&)’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:56:10: warning: extended initializer lists only available with -std=c++11 or -std=gnu++11
int m{0}, s{0};
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:56:16: warning: extended initializer lists only available with -std=c++11 or -std=gnu++11
int m{0}, s{0};
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:65:13: warning: ‘auto’ changes meaning in C++11; please remove it [-Wc++0x-compat]
const auto eta = std::exp(t * mu / s);
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:65:18: error: ‘eta’ does not name a type
const auto eta = std::exp(t * mu / s);
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:67:9: warning: ‘auto’ changes meaning in C++11; please remove it [-Wc++0x-compat]
auto c1 = B.template lpNorm<Eigen::Infinity>();
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:67:14: error: ‘c1’ does not name a type
auto c1 = B.template lpNorm<Eigen::Infinity>();
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:71:13: warning: ‘auto’ changes meaning in C++11; please remove it [-Wc++0x-compat]
auto c2 = B.template lpNorm<Eigen::Infinity>();
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:71:18: error: ‘c2’ does not name a type
auto c2 = B.template lpNorm<Eigen::Infinity>();
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:73:17: error: ‘c1’ was not declared in this scope
if (c1 + c2 < tol * F.template lpNorm<Eigen::Infinity>()) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:73:22: error: ‘c2’ was not declared in this scope
if (c1 + c2 < tol * F.template lpNorm<Eigen::Infinity>()) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:73:27: error: ‘tol’ was not declared in this scope
if (c1 + c2 < tol * F.template lpNorm<Eigen::Infinity>()) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:77:13: error: ‘c1’ was not declared in this scope
c1 = c2;
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:77:18: error: ‘c2’ was not declared in this scope
c1 = c2;
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:80:14: error: ‘eta’ was not declared in this scope
F *= eta;
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp: In member function ‘void stan::math::matrix_exp_action_handler::set_approximation_parameter(const MatrixXd&, const double&, int&, int&)’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:106:23: error: ‘tol’ was not declared in this scope
if (l1norm(mat) < tol || t < tol) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:110:11: error: ‘m_max’ was not declared in this scope
m = m_max;
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:114:12: warning: ‘auto’ changes meaning in C++11; please remove it [-Wc++0x-compat]
for (auto i = 0; i < std::ceil(std::log2(p_max)); ++i) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:114:17: error: ‘i’ does not name a type
for (auto i = 0; i < std::ceil(std::log2(p_max)); ++i) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:114:24: error: expected ‘;’ before ‘i’
for (auto i = 0; i < std::ceil(std::log2(p_max)); ++i) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:114:24: error: ‘i’ was not declared in this scope
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:114:38: error: ‘log2’ is not a member of ‘std’
for (auto i = 0; i < std::ceil(std::log2(p_max)); ++i) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:114:38: note: suggested alternatives:
In file included from /usr/include/features.h:367:0,
from /usr/include/x86_64-linux-gnu/c++/5/bits/os_defines.h:39,
from /usr/include/x86_64-linux-gnu/c++/5/bits/c++config.h:482,
from /usr/include/c++/5/cmath:41,
from /home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include/Rcpp/platform/compiler.h:100,
from /home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include/Rcpp/r/headers.h:59,
from /home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include/RcppCommon.h:29,
from /home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include/Rcpp.h:27,
from stan_files/mmlm_code.cc:1:
/usr/include/x86_64-linux-gnu/bits/mathcalls.h:144:1: note: ‘log2’
__MATHCALL (log2,, (_Mdouble_ __x));
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:151:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/log2.hpp:38:59: note: ‘stan::math::log2’
inline typename apply_scalar_unary<log2_fun, T>::return_t log2(const T& x) {
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/RcppEigen/include/Eigen/Core:371:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/core.hpp:14,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/RcppEigen/include/Eigen/src/Core/MathFunctions.h:994:12: note: ‘Eigen::numext::log2’
inline int log2(int x)
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_multiply.hpp:5:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:162,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:114:48: error: ‘p_max’ was not declared in this scope
for (auto i = 0; i < std::ceil(std::log2(p_max)); ++i) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_action_handler.hpp:117:45: error: ‘p_max’ was not declared in this scope
double ap = std::pow(l1norm(a), 1.0 / p_max);
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:6:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:13,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:262,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_reduce.hpp: At global scope:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_reduce.hpp:45:44: error: ‘nullptr’ was not declared in this scope
std::ostream* msgs = nullptr) const {
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:7:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:13,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:262,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:41:51: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:41:51: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:42:7: error: ‘ops_partials_t’ was not declared in this scope
ops_partials_t;
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:42:7: error: template argument 3 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:42:7: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:42:7: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:41:14: error: template argument 2 is invalid
Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:41:14: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:39:11: warning: ‘typedef’ was ignored in this declaration
typedef operands_and_partials<
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:43:15: error: ‘ops_partials_t’ was not declared in this scope
std::vector<ops_partials_t> ops_partials_;
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:43:29: error: template argument 1 is invalid
std::vector<ops_partials_t> ops_partials_;
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:43:29: error: template argument 2 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘job_params’ was not declared in this scope
job_params)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 3 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘job_params’ was not declared in this scope
job_params)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 3 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘job_params’ was not declared in this scope
job_params)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 3 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘job_params’ was not declared in this scope
job_params)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 3 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘job_params’ was not declared in this scope
job_params)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 3 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘job_params’ was not declared in this scope
job_params)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 3 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘job_params’ was not declared in this scope
job_params)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 3 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘job_params’ was not declared in this scope
job_params)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 3 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘job_params’ was not declared in this scope
job_params)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 3 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘job_params’ was not declared in this scope
job_params)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 3 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 1 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 2 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘job_params’ was not declared in this scope
job_params)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 3 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘job_params’ was not declared in this scope
job_params)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 3 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘job_params’ was not declared in this scope
job_params)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 3 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘job_params’ was not declared in this scope
job_params)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 3 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘job_params’ was not declared in this scope
job_params)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 3 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘job_params’ was not declared in this scope
job_params)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 3 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘job_params’ was not declared in this scope
job_params)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 3 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘job_params’ was not declared in this scope
job_params)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 3 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘job_params’ was not declared in this scope
job_params)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 3 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘job_params’ was not declared in this scope
job_params)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 3 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 1 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 2 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘job_params’ was not declared in this scope
job_params)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 3 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘job_params’ was not declared in this scope
job_params)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 3 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘job_params’ was not declared in this scope
job_params)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 3 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘job_params’ was not declared in this scope
job_params)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 3 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘job_params’ was not declared in this scope
job_params)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 3 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘job_params’ was not declared in this scope
job_params)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 3 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘job_params’ was not declared in this scope
job_params)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 3 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘job_params’ was not declared in this scope
job_params)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 3 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘job_params’ was not declared in this scope
job_params)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 3 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘job_params’ was not declared in this scope
job_params)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 3 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 1 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 2 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘job_params’ was not declared in this scope
job_params)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 3 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘job_params’ was not declared in this scope
job_params)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 3 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘job_params’ was not declared in this scope
job_params)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 3 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘job_params’ was not declared in this scope
job_params)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 3 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘job_params’ was not declared in this scope
job_params)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 3 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘job_params’ was not declared in this scope
job_params)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 3 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘job_params’ was not declared in this scope
job_params)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 3 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘job_params’ was not declared in this scope
job_params)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 3 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘job_params’ was not declared in this scope
job_params)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 3 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:69: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘job_params’ was not declared in this scope
job_params)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 3 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 1 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:59:11: error: template argument 2 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:13: error: invalid use of template-name ‘std::vector’ without an argument list
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:58:24: error: expected ‘,’ or ‘...’ before ‘<’ token
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp: In constructor ‘stan::math::internal::map_rect_combine<F, T_shared_param, T_job_param>::map_rect_combine(const Eigen::Matrix<RhsScalar, -1, 1>&, int)’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:62:32: error: ‘job_params’ was not declared in this scope
num_job_operands_(dims(job_params)[1]) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:63:19: error: request for member ‘reserve’ in ‘((stan::math::internal::map_rect_combine<F, T_shared_param, T_job_param>*)this)->stan::math::internal::map_rect_combine<F, T_shared_param, T_job_param>::ops_partials_’, which is of non-class type ‘int’
ops_partials_.reserve(job_params.size());
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:64:16: warning: ‘auto’ changes meaning in C++11; please remove it [-Wc++0x-compat]
for (const auto& job_param : job_params)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:64:22: error: ISO C++ forbids declaration of ‘job_param’ with no type [-fpermissive]
for (const auto& job_param : job_params)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:64:34: warning: range-based ‘for’ loops only available with -std=c++11 or -std=gnu++11
for (const auto& job_param : job_params)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:65:21: error: request for member ‘emplace_back’ in ‘((stan::math::internal::map_rect_combine<F, T_shared_param, T_job_param>*)this)->stan::math::internal::map_rect_combine<F, T_shared_param, T_job_param>::ops_partials_’, which is of non-class type ‘int’
ops_partials_.emplace_back(shared_params, job_param);
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp: In member function ‘stan::math::internal::map_rect_combine<F, T_shared_param, T_job_param>::result_t stan::math::internal::map_rect_combine<F, T_shared_param, T_job_param>::operator()(const matrix_d&, const std::vector<int>&)’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:81:26: error: invalid types ‘int[std::size_t {aka long unsigned int}]’ for array subscript
ops_partials_[i].edge1_.partials_
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:85:26: error: invalid types ‘int[std::size_t {aka long unsigned int}]’ for array subscript
ops_partials_[i].edge2_.partials_
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_combine.hpp:88:34: error: invalid types ‘int[std::size_t {aka long unsigned int}]’ for array subscript
out(ij) = ops_partials_[i].build(world_result(0, ij));
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:13:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:262,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp: At global scope:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:62:41: error: ‘>>’ should be ‘> >’ within a nested template argument list
const std::vector<std::vector<double>>& x_r,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 3 is invalid
const std::vector<std::vector<int>>& x_i, std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 3 is invalid
const std::vector<std::vector<int>>& x_i, std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 3 is invalid
const std::vector<std::vector<int>>& x_i, std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 3 is invalid
const std::vector<std::vector<int>>& x_i, std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 3 is invalid
const std::vector<std::vector<int>>& x_i, std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 3 is invalid
const std::vector<std::vector<int>>& x_i, std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 3 is invalid
const std::vector<std::vector<int>>& x_i, std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 3 is invalid
const std::vector<std::vector<int>>& x_i, std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 3 is invalid
const std::vector<std::vector<int>>& x_i, std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 3 is invalid
const std::vector<std::vector<int>>& x_i, std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 1 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 2 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 3 is invalid
const std::vector<std::vector<int>>& x_i, std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 3 is invalid
const std::vector<std::vector<int>>& x_i, std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 3 is invalid
const std::vector<std::vector<int>>& x_i, std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 3 is invalid
const std::vector<std::vector<int>>& x_i, std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 3 is invalid
const std::vector<std::vector<int>>& x_i, std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 3 is invalid
const std::vector<std::vector<int>>& x_i, std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 3 is invalid
const std::vector<std::vector<int>>& x_i, std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 3 is invalid
const std::vector<std::vector<int>>& x_i, std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 3 is invalid
const std::vector<std::vector<int>>& x_i, std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 3 is invalid
const std::vector<std::vector<int>>& x_i, std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 1 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 2 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 3 is invalid
const std::vector<std::vector<int>>& x_i, std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 3 is invalid
const std::vector<std::vector<int>>& x_i, std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 3 is invalid
const std::vector<std::vector<int>>& x_i, std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 3 is invalid
const std::vector<std::vector<int>>& x_i, std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 3 is invalid
const std::vector<std::vector<int>>& x_i, std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 3 is invalid
const std::vector<std::vector<int>>& x_i, std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 3 is invalid
const std::vector<std::vector<int>>& x_i, std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 3 is invalid
const std::vector<std::vector<int>>& x_i, std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 3 is invalid
const std::vector<std::vector<int>>& x_i, std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 3 is invalid
const std::vector<std::vector<int>>& x_i, std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 1 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 2 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 3 is invalid
const std::vector<std::vector<int>>& x_i, std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 3 is invalid
const std::vector<std::vector<int>>& x_i, std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 3 is invalid
const std::vector<std::vector<int>>& x_i, std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 3 is invalid
const std::vector<std::vector<int>>& x_i, std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 3 is invalid
const std::vector<std::vector<int>>& x_i, std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 3 is invalid
const std::vector<std::vector<int>>& x_i, std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 3 is invalid
const std::vector<std::vector<int>>& x_i, std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 3 is invalid
const std::vector<std::vector<int>>& x_i, std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 3 is invalid
const std::vector<std::vector<int>>& x_i, std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:67: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:61:9: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 3 is invalid
const std::vector<std::vector<int>>& x_i, std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 1 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:63:68: error: template argument 2 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:11: error: invalid use of template-name ‘std::vector’ without an argument list
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:60:22: error: expected ‘,’ or ‘...’ before ‘<’ token
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp: In function ‘Eigen::Matrix<typename stan::return_type<T_shared_param, T_job_param>::type, -1, 1> stan::math::internal::map_rect_concurrent(const Eigen::Matrix<T_shared_param, -1, 1>&, int)’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:67:24: error: ‘job_params’ was not declared in this scope
const int num_jobs = job_params.size();
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:69:15: error: ‘future’ is not a member of ‘std’
std::vector<std::future<std::vector<matrix_d>>> futures;
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:69:15: error: ‘future’ is not a member of ‘std’
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:69:47: error: ‘>>’ should be ‘> >’ within a nested template argument list
std::vector<std::future<std::vector<matrix_d>>> futures;
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:69:47: error: template argument 1 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:69:47: error: template argument 2 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:69:49: error: expected unqualified-id before ‘>’ token
std::vector<std::future<std::vector<matrix_d>>> futures;
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:71:3: warning: ‘auto’ changes meaning in C++11; please remove it [-Wc++0x-compat]
auto execute_chunk = [&](int start, int size) -> std::vector<matrix_d> {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:71:8: error: ‘execute_chunk’ does not name a type
auto execute_chunk = [&](int start, int size) -> std::vector<matrix_d> {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:83:3: error: ‘futures’ was not declared in this scope
futures.emplace_back(
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:84:7: error: ‘async’ is not a member of ‘std’
std::async(std::launch::deferred, execute_chunk, 0, num_jobs_per_thread));
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:84:23: error: ‘std::launch’ has not been declared
std::async(std::launch::deferred, execute_chunk, 0, num_jobs_per_thread));
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:84:41: error: ‘execute_chunk’ was not declared in this scope
std::async(std::launch::deferred, execute_chunk, 0, num_jobs_per_thread));
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:112:16: warning: ‘auto’ changes meaning in C++11; please remove it [-Wc++0x-compat]
for (const auto& job_result : chunk_result) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:112:22: error: ISO C++ forbids declaration of ‘job_result’ with no type [-fpermissive]
for (const auto& job_result : chunk_result) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:112:35: warning: range-based ‘for’ loops only available with -std=c++11 or -std=gnu++11
for (const auto& job_result : chunk_result) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect_concurrent.hpp:113:46: error: request for member ‘cols’ in ‘job_result’, which is of non-class type ‘const int’
const int num_job_outputs = job_result.cols();
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:262:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp: At global scope:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:126:46: error: ‘>>’ should be ‘> >’ within a nested template argument list
const std::vector<std::vector<double>>& x_r,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 3 is invalid
std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 3 is invalid
std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 3 is invalid
std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 3 is invalid
std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 3 is invalid
std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 3 is invalid
std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 3 is invalid
std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 3 is invalid
std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 3 is invalid
std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 3 is invalid
std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 1 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 2 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 3 is invalid
std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 3 is invalid
std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 3 is invalid
std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 3 is invalid
std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 3 is invalid
std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 3 is invalid
std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 3 is invalid
std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 3 is invalid
std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 3 is invalid
std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 3 is invalid
std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 1 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 2 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 3 is invalid
std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 3 is invalid
std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 3 is invalid
std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 3 is invalid
std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 3 is invalid
std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 3 is invalid
std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 3 is invalid
std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 3 is invalid
std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 3 is invalid
std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 3 is invalid
std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 1 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 2 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 3 is invalid
std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 3 is invalid
std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 3 is invalid
std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 3 is invalid
std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 3 is invalid
std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 3 is invalid
std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 3 is invalid
std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 3 is invalid
std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 3 is invalid
std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:72: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘job_params’ was not declared in this scope
job_params,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:125:14: error: ‘&’ cannot appear in a constant-expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 3 is invalid
std::ostream* msgs = nullptr) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 1 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:128:31: error: template argument 2 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:16: error: invalid use of template-name ‘std::vector’ without an argument list
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:124:27: error: expected ‘,’ or ‘...’ before ‘<’ token
const std::vector<Eigen::Matrix<T_job_param, Eigen::Dynamic, 1>>&
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp: In function ‘Eigen::Matrix<typename stan::return_type<T_shared_param, T_job_param>::type, -1, 1> stan::math::map_rect(const Eigen::Matrix<T_shared_param, -1, 1>&, int)’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:135:52: error: ‘job_params’ was not declared in this scope
check_matching_sizes(function, "job parameters", job_params, "real data",
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:136:24: error: ‘x_r’ was not declared in this scope
x_r);
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:137:76: error: ‘x_i’ was not declared in this scope
check_matching_sizes(function, "job parameters", job_params, "int data", x_i);
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/functor/map_rect.hpp:176:44: error: ‘msgs’ was not declared in this scope
shared_params, job_params, x_r, x_i, msgs);
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/bernoulli_logit_glm_lpmf.hpp:15:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:267,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/size_zero.hpp: At global scope:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/size_zero.hpp:30:31: warning: variadic templates only available with -std=c++11 or -std=gnu++11
template <typename T, typename... Ts>
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/size_zero.hpp:31:31: error: expected ‘,’ or ‘...’ before ‘&&’ token
inline bool size_zero(T& x, Ts&&... xs) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/size_zero.hpp:31:39: error: parameter packs not expanded with ‘...’:
inline bool size_zero(T& x, Ts&&... xs) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/size_zero.hpp:31:39: note: ‘Ts’
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/size_zero.hpp: In function ‘bool stan::math::size_zero(T&, <type error>)’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/size_zero.hpp:32:37: error: ‘forward’ is not a member of ‘std’
return (size_zero(x) || size_zero(std::forward<Ts>(xs)...));
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/size_zero.hpp:32:37: note: suggested alternative:
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/fusion/iterator/iterator_facade.hpp:12:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/fusion/iterator/detail/segmented_iterator.hpp:13,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/fusion/iterator/segmented_iterator.hpp:11,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/fusion/sequence/intrinsic/detail/segmented_begin.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/fusion/sequence/intrinsic/begin.hpp:18,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/fusion/container/vector/detail/cpp03/vector10.hpp:17,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/fusion/container/vector/detail/cpp03/vector_fwd.hpp:15,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/fusion/container/vector/vector_fwd.hpp:18,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/fusion/container/vector/vector.hpp:13,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/fusion/tuple/detail/tuple.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/fusion/tuple/tuple.hpp:17,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/fusion/tuple.hpp:11,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/fusion/include/tuple.hpp:11,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/tools/tuple.hpp:68,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/special_functions/detail/igamma_inverse.hpp:13,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/special_functions/gamma.hpp:2072,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/special_functions/erf.hpp:15,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/Phi.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/Phi.hpp:5,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:55,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/fusion/iterator/detail/advance.hpp:24:12: note: ‘boost::fusion::advance_detail::forward’
struct forward;
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/bernoulli_logit_glm_lpmf.hpp:15:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:267,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/size_zero.hpp:32:52: error: expected primary-expression before ‘>’ token
return (size_zero(x) || size_zero(std::forward<Ts>(xs)...));
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/size_zero.hpp:32:54: error: ‘xs’ was not declared in this scope
return (size_zero(x) || size_zero(std::forward<Ts>(xs)...));
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/categorical_logit_lpmf.hpp:6:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/categorical_logit_log.hpp:5,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:269,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/fun/log_sum_exp.hpp: In function ‘double stan::math::log_sum_exp(const std::vector<double>&)’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/fun/log_sum_exp.hpp:30:20: warning: range-based ‘for’ loops only available with -std=c++11 or -std=gnu++11
for (double xx : x)
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/categorical_logit_log.hpp:5:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:269,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/categorical_logit_lpmf.hpp: In function ‘typename boost::math::tools::promote_args<T2>::type stan::math::categorical_logit_lpmf(const std::vector<int>&, const Eigen::Matrix<RhsScalar, -1, 1>&)’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/categorical_logit_lpmf.hpp:47:14: warning: ‘auto’ changes meaning in C++11; please remove it [-Wc++0x-compat]
for (const auto& x : ns)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/categorical_logit_lpmf.hpp:47:20: error: ISO C++ forbids declaration of ‘x’ with no type [-fpermissive]
for (const auto& x : ns)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/categorical_logit_lpmf.hpp:47:24: warning: range-based ‘for’ loops only available with -std=c++11 or -std=gnu++11
for (const auto& x : ns)
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/lkj_corr_cholesky_rng.hpp:7:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:284,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/beta_rng.hpp: In function ‘typename stan::VectorBuilder<true, double, T_loc, T_scale>::type stan::math::beta_rng(const T_shape1&, const T_shape2&, RNG&)’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/beta_rng.hpp:53:54: error: ‘>>’ should be ‘> >’ within a nested template argument list
variate_generator<RNG &, uniform_real_distribution<>> uniform_rng(
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/beta_rng.hpp:60:51: error: ‘>>’ should be ‘> >’ within a nested template argument list
variate_generator<RNG &, gamma_distribution<>> rng_gamma_alpha(
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/beta_rng.hpp:62:51: error: ‘>>’ should be ‘> >’ within a nested template argument list
variate_generator<RNG &, gamma_distribution<>> rng_gamma_beta(
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/beta_rng.hpp:68:51: error: ‘>>’ should be ‘> >’ within a nested template argument list
variate_generator<RNG &, gamma_distribution<>> rng_gamma_alpha(
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/beta_rng.hpp:70:51: error: ‘>>’ should be ‘> >’ within a nested template argument list
variate_generator<RNG &, gamma_distribution<>> rng_gamma_beta(
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multinomial_log.hpp:5:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:307,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multinomial_lpmf.hpp: In function ‘typename boost::math::tools::promote_args<T2>::type stan::math::multinomial_lpmf(const std::vector<int>&, const Eigen::Matrix<RhsScalar, -1, 1>&)’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multinomial_lpmf.hpp:37:18: warning: range-based ‘for’ loops only available with -std=c++11 or -std=gnu++11
for (int n : ns)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/multinomial_lpmf.hpp:40:18: warning: range-based ‘for’ loops only available with -std=c++11 or -std=gnu++11
for (int n : ns)
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:310:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/neg_binomial_2_log_glm_lpmf.hpp: In function ‘typename stan::return_type<T_x, T_beta, T_alpha, T_precision>::type stan::math::neg_binomial_2_log_glm_lpmf(const T_n&, const T_x&, const T_beta&, const T_alpha&, const T_precision&)’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/neg_binomial_2_log_glm_lpmf.hpp:119:9: warning: lambda expressions only available with -std=c++11 or -std=gnu++11
});
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/neg_binomial_2_log_glm_lpmf.hpp:126:74: warning: lambda expressions only available with -std=c++11 or -std=gnu++11
[](const T_partials_return& xx) { return lgamma(xx); })
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/neg_binomial_2_log_glm_lpmf.hpp:134:18: warning: lambda expressions only available with -std=c++11 or -std=gnu++11
})
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/neg_binomial_2_log_glm_lpmf.hpp:136:73: warning: lambda expressions only available with -std=c++11 or -std=gnu++11
[](const T_partials_return& xx) { return lgamma(xx); }))
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/neg_binomial_2_log_glm_lpmf.hpp:146:74: warning: lambda expressions only available with -std=c++11 or -std=gnu++11
[](const T_partials_return& xx) { return lgamma(xx); })
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/neg_binomial_2_log_glm_lpmf.hpp:178:72: warning: lambda expressions only available with -std=c++11 or -std=gnu++11
[](const T_partials_return& xx) { return digamma(xx); })
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/neg_binomial_2_log_glm_lpmf.hpp:180:72: warning: lambda expressions only available with -std=c++11 or -std=gnu++11
[](const T_partials_return& xx) { return digamma(xx); }))
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:25:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/fun/dot_self.hpp: In function ‘double stan::math::dot_self(const std::vector<double>&)’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/fun/dot_self.hpp:12:19: warning: range-based ‘for’ loops only available with -std=c++11 or -std=gnu++11
for (double i : x)
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/exp_sinh.hpp:21:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:43,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/exp_sinh_detail.hpp: At global scope:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/exp_sinh_detail.hpp:44:5: warning: ‘auto’ changes meaning in C++11; please remove it [-Wc++0x-compat]
auto integrate(const F& f, Real* error, Real* L1, const char* function, Real tolerance, std::size_t* levels)->decltype(std::declval<F>()(std::declval<Real>())) const;
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/exp_sinh_detail.hpp:44:115: error: expected type-specifier before ‘decltype’
auto integrate(const F& f, Real* error, Real* L1, const char* function, Real tolerance, std::size_t* levels)->decltype(std::declval<F>()(std::declval<Real>())) const;
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/exp_sinh_detail.hpp:44:115: error: expected initializer before ‘decltype’
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/exp_sinh_detail.hpp:126:41: error: ‘>>’ should be ‘> >’ within a nested template argument list
mutable std::vector<std::vector<Real>> m_abscissas;
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/exp_sinh_detail.hpp:127:41: error: ‘>>’ should be ‘> >’ within a nested template argument list
mutable std::vector<std::vector<Real>> m_weights;
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/exp_sinh_detail.hpp:146:1: warning: ‘auto’ changes meaning in C++11; please remove it [-Wc++0x-compat]
auto exp_sinh_detail<Real, Policy>::integrate(const F& f, Real* error, Real* L1, const char* function, Real tolerance, std::size_t* levels)->decltype(std::declval<F>()(std::declval<Real>())) const
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/exp_sinh_detail.hpp:146:142: error: expected type-specifier before ‘decltype’
auto exp_sinh_detail<Real, Policy>::integrate(const F& f, Real* error, Real* L1, const char* function, Real tolerance, std::size_t* levels)->decltype(std::declval<F>()(std::declval<Real>())) const
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/exp_sinh_detail.hpp:146:142: error: expected initializer before ‘decltype’
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/exp_sinh.hpp:21:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:43,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/exp_sinh_detail.hpp: In member function ‘void boost::math::quadrature::detail::exp_sinh_detail<Real, Policy>::init(const mpl_::int_<0>&)’:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/exp_sinh_detail.hpp:270:15: error: ‘std::asinh’ has not been declared
using std::asinh;
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/exp_sinh.hpp:21:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:43,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/exp_sinh_detail.hpp: In member function ‘void boost::math::quadrature::detail::exp_sinh_detail<Real, Policy>::init(const mpl_::int_<1>&)’:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/exp_sinh_detail.hpp:352:4: warning: extended initializer lists only available with -std=c++11 or -std=gnu++11
};
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/exp_sinh.hpp:21:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:43,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/exp_sinh_detail.hpp:362:4: warning: extended initializer lists only available with -std=c++11 or -std=gnu++11
};
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/exp_sinh.hpp:21:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:43,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/exp_sinh_detail.hpp: In member function ‘void boost::math::quadrature::detail::exp_sinh_detail<Real, Policy>::init(const mpl_::int_<2>&)’:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/exp_sinh_detail.hpp:392:4: warning: extended initializer lists only available with -std=c++11 or -std=gnu++11
};
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/exp_sinh.hpp:21:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:43,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/exp_sinh_detail.hpp:402:4: warning: extended initializer lists only available with -std=c++11 or -std=gnu++11
};
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/exp_sinh.hpp:21:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:43,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/exp_sinh_detail.hpp: In member function ‘void boost::math::quadrature::detail::exp_sinh_detail<Real, Policy>::init(const mpl_::int_<3>&)’:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/exp_sinh_detail.hpp:432:4: warning: extended initializer lists only available with -std=c++11 or -std=gnu++11
};
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/exp_sinh.hpp:21:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:43,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/exp_sinh_detail.hpp:442:4: warning: extended initializer lists only available with -std=c++11 or -std=gnu++11
};
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/exp_sinh.hpp:21:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:43,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/exp_sinh_detail.hpp: In member function ‘void boost::math::quadrature::detail::exp_sinh_detail<Real, Policy>::init(const mpl_::int_<4>&)’:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/exp_sinh_detail.hpp:473:4: warning: extended initializer lists only available with -std=c++11 or -std=gnu++11
};
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/exp_sinh.hpp:21:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:43,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/exp_sinh_detail.hpp:483:4: warning: extended initializer lists only available with -std=c++11 or -std=gnu++11
};
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:7:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:43,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/exp_sinh.hpp: At global scope:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/exp_sinh.hpp:33:5: warning: ‘auto’ changes meaning in C++11; please remove it [-Wc++0x-compat]
auto integrate(const F& f, Real a, Real b, Real tol = boost::math::tools::root_epsilon<Real>(), Real* error = nullptr, Real* L1 = nullptr, std::size_t* levels = nullptr)->decltype(std::declval<F>()(std::declval<Real>())) const;
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:7:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:43,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/exp_sinh.hpp:33:176: error: expected type-specifier before ‘decltype’
auto integrate(const F& f, Real a, Real b, Real tol = boost::math::tools::root_epsilon<Real>(), Real* error = nullptr, Real* L1 = nullptr, std::size_t* levels = nullptr)->decltype(std::declval<F>()(std::declval<Real>())) const;
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/exp_sinh.hpp:33:176: error: expected initializer before ‘decltype’
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/exp_sinh.hpp:35:5: warning: ‘auto’ changes meaning in C++11; please remove it [-Wc++0x-compat]
auto integrate(const F& f, Real tol = boost::math::tools::root_epsilon<Real>(), Real* error = nullptr, Real* L1 = nullptr, std::size_t* levels = nullptr)->decltype(std::declval<F>()(std::declval<Real>())) const;
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/exp_sinh.hpp:35:160: error: expected type-specifier before ‘decltype’
auto integrate(const F& f, Real tol = boost::math::tools::root_epsilon<Real>(), Real* error = nullptr, Real* L1 = nullptr, std::size_t* levels = nullptr)->decltype(std::declval<F>()(std::declval<Real>())) const;
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/exp_sinh.hpp:35:160: error: expected initializer before ‘decltype’
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/exp_sinh.hpp:38:10: error: ‘shared_ptr’ in namespace ‘std’ does not name a template type
std::shared_ptr<detail::exp_sinh_detail<Real, Policy>> m_imp;
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:7:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:43,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/exp_sinh.hpp: In constructor ‘boost::math::quadrature::exp_sinh<Real, Policy>::exp_sinh(size_t)’:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/exp_sinh.hpp:30:9: error: class ‘boost::math::quadrature::exp_sinh<Real, Policy>’ does not have any field named ‘m_imp’
: m_imp(std::make_shared<detail::exp_sinh_detail<Real, Policy>>(max_refinements)) {}
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/exp_sinh.hpp:30:15: error: ‘make_shared’ is not a member of ‘std’
: m_imp(std::make_shared<detail::exp_sinh_detail<Real, Policy>>(max_refinements)) {}
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/exp_sinh.hpp:30:68: error: spurious ‘>>’, use ‘>’ to terminate a template argument list
: m_imp(std::make_shared<detail::exp_sinh_detail<Real, Policy>>(max_refinements)) {}
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:7:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:43,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/exp_sinh.hpp: At global scope:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/exp_sinh.hpp:43:1: warning: ‘auto’ changes meaning in C++11; please remove it [-Wc++0x-compat]
auto exp_sinh<Real, Policy>::integrate(const F& f, Real a, Real b, Real tolerance, Real* error, Real* L1, std::size_t* levels)->decltype(std::declval<F>()(std::declval<Real>())) const
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/exp_sinh.hpp:43:129: error: expected type-specifier before ‘decltype’
auto exp_sinh<Real, Policy>::integrate(const F& f, Real a, Real b, Real tolerance, Real* error, Real* L1, std::size_t* levels)->decltype(std::declval<F>()(std::declval<Real>())) const
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/exp_sinh.hpp:43:129: error: expected initializer before ‘decltype’
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/exp_sinh.hpp:86:1: warning: ‘auto’ changes meaning in C++11; please remove it [-Wc++0x-compat]
auto exp_sinh<Real, Policy>::integrate(const F& f, Real tolerance, Real* error, Real* L1, std::size_t* levels)->decltype(std::declval<F>()(std::declval<Real>())) const
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/exp_sinh.hpp:86:113: error: expected type-specifier before ‘decltype’
auto exp_sinh<Real, Policy>::integrate(const F& f, Real tolerance, Real* error, Real* L1, std::size_t* levels)->decltype(std::declval<F>()(std::declval<Real>())) const
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/exp_sinh.hpp:86:113: error: expected initializer before ‘decltype’
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/sinh_sinh.hpp:21:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:8,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:43,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/sinh_sinh_detail.hpp:44:5: warning: ‘auto’ changes meaning in C++11; please remove it [-Wc++0x-compat]
auto integrate(const F f, Real tolerance, Real* error, Real* L1, std::size_t* levels)->decltype(std::declval<F>()(std::declval<Real>())) const;
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/sinh_sinh_detail.hpp:44:92: error: expected type-specifier before ‘decltype’
auto integrate(const F f, Real tolerance, Real* error, Real* L1, std::size_t* levels)->decltype(std::declval<F>()(std::declval<Real>())) const;
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/sinh_sinh_detail.hpp:44:92: error: expected initializer before ‘decltype’
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/sinh_sinh_detail.hpp:125:40: error: ‘>>’ should be ‘> >’ within a nested template argument list
mutable std::vector<std::vector<Real>> m_abscissas;
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/sinh_sinh_detail.hpp:126:40: error: ‘>>’ should be ‘> >’ within a nested template argument list
mutable std::vector<std::vector<Real>> m_weights;
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/sinh_sinh_detail.hpp:145:1: warning: ‘auto’ changes meaning in C++11; please remove it [-Wc++0x-compat]
auto sinh_sinh_detail<Real, Policy>::integrate(const F f, Real tolerance, Real* error, Real* L1, std::size_t* levels)->decltype(std::declval<F>()(std::declval<Real>())) const
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/sinh_sinh_detail.hpp:145:120: error: expected type-specifier before ‘decltype’
auto sinh_sinh_detail<Real, Policy>::integrate(const F f, Real tolerance, Real* error, Real* L1, std::size_t* levels)->decltype(std::declval<F>()(std::declval<Real>())) const
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/sinh_sinh_detail.hpp:145:120: error: expected initializer before ‘decltype’
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/sinh_sinh.hpp:21:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:8,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:43,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/sinh_sinh_detail.hpp: In member function ‘void boost::math::quadrature::detail::sinh_sinh_detail<Real, Policy>::init(const mpl_::int_<1>&)’:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/sinh_sinh_detail.hpp:328:4: warning: extended initializer lists only available with -std=c++11 or -std=gnu++11
};
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/sinh_sinh.hpp:21:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:8,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:43,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/sinh_sinh_detail.hpp:338:4: warning: extended initializer lists only available with -std=c++11 or -std=gnu++11
};
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/sinh_sinh.hpp:21:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:8,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:43,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/sinh_sinh_detail.hpp: In member function ‘void boost::math::quadrature::detail::sinh_sinh_detail<Real, Policy>::init(const mpl_::int_<2>&)’:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/sinh_sinh_detail.hpp:368:4: warning: extended initializer lists only available with -std=c++11 or -std=gnu++11
};
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/sinh_sinh.hpp:21:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:8,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:43,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/sinh_sinh_detail.hpp:378:4: warning: extended initializer lists only available with -std=c++11 or -std=gnu++11
};
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/sinh_sinh.hpp:21:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:8,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:43,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/sinh_sinh_detail.hpp: In member function ‘void boost::math::quadrature::detail::sinh_sinh_detail<Real, Policy>::init(const mpl_::int_<3>&)’:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/sinh_sinh_detail.hpp:409:4: warning: extended initializer lists only available with -std=c++11 or -std=gnu++11
};
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/sinh_sinh.hpp:21:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:8,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:43,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/sinh_sinh_detail.hpp:419:4: warning: extended initializer lists only available with -std=c++11 or -std=gnu++11
};
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/sinh_sinh.hpp:21:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:8,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:43,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/sinh_sinh_detail.hpp: In member function ‘void boost::math::quadrature::detail::sinh_sinh_detail<Real, Policy>::init(const mpl_::int_<4>&)’:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/sinh_sinh_detail.hpp:450:4: warning: extended initializer lists only available with -std=c++11 or -std=gnu++11
};
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/sinh_sinh.hpp:21:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:8,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:43,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/sinh_sinh_detail.hpp:460:4: warning: extended initializer lists only available with -std=c++11 or -std=gnu++11
};
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:8:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:43,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/sinh_sinh.hpp: At global scope:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/sinh_sinh.hpp:33:5: warning: ‘auto’ changes meaning in C++11; please remove it [-Wc++0x-compat]
auto integrate(const F f, Real tol = boost::math::tools::root_epsilon<Real>(), Real* error = nullptr, Real* L1 = nullptr, std::size_t* levels = nullptr)->decltype(std::declval<F>()(std::declval<Real>())) const
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:8:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:43,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/sinh_sinh.hpp:33:159: error: expected type-specifier before ‘decltype’
auto integrate(const F f, Real tol = boost::math::tools::root_epsilon<Real>(), Real* error = nullptr, Real* L1 = nullptr, std::size_t* levels = nullptr)->decltype(std::declval<F>()(std::declval<Real>())) const
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/sinh_sinh.hpp:33:159: error: expected initializer before ‘decltype’
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/sinh_sinh.hpp:39:10: error: ‘shared_ptr’ in namespace ‘std’ does not name a template type
std::shared_ptr<detail::sinh_sinh_detail<Real, Policy>> m_imp;
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:8:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:43,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/sinh_sinh.hpp: In constructor ‘boost::math::quadrature::sinh_sinh<Real, Policy>::sinh_sinh(size_t)’:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/sinh_sinh.hpp:30:11: error: class ‘boost::math::quadrature::sinh_sinh<Real, Policy>’ does not have any field named ‘m_imp’
: m_imp(std::make_shared<detail::sinh_sinh_detail<Real, Policy> >(max_refinements)) {}
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/sinh_sinh.hpp:30:17: error: ‘make_shared’ is not a member of ‘std’
: m_imp(std::make_shared<detail::sinh_sinh_detail<Real, Policy> >(max_refinements)) {}
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/sinh_sinh.hpp:30:73: error: expected primary-expression before ‘>’ token
: m_imp(std::make_shared<detail::sinh_sinh_detail<Real, Policy> >(max_refinements)) {}
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/tanh_sinh.hpp:35:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:9,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:43,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/tanh_sinh_detail.hpp: At global scope:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/tanh_sinh_detail.hpp:48:19: error: ‘std::declval’ has not been declared
decltype(std::declval<F>()(std::declval<Real>(), std::declval<Real>())) integrate(const F f, Real* error, Real* L1, const char* function, Real left_min_complement, Real right_min_complement, Real tolerance, std::size_t* levels) const;
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/tanh_sinh_detail.hpp:48:26: error: expected ‘,’ or ‘...’ before ‘<’ token
decltype(std::declval<F>()(std::declval<Real>(), std::declval<Real>())) integrate(const F f, Real* error, Real* L1, const char* function, Real left_min_complement, Real right_min_complement, Real tolerance, std::size_t* levels) const;
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/tanh_sinh_detail.hpp:48:77: error: expected constructor, destructor, or type conversion before ‘integrate’
decltype(std::declval<F>()(std::declval<Real>(), std::declval<Real>())) integrate(const F f, Real* error, Real* L1, const char* function, Real left_min_complement, Real right_min_complement, Real tolerance, std::size_t* levels) const;
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/tanh_sinh_detail.hpp:169:40: error: ‘>>’ should be ‘> >’ within a nested template argument list
mutable std::vector<std::vector<Real>> m_abscissas;
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/tanh_sinh_detail.hpp:170:40: error: ‘>>’ should be ‘> >’ within a nested template argument list
mutable std::vector<std::vector<Real>> m_weights;
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/tanh_sinh_detail.hpp:184:1: error: too many template-parameter-lists
decltype(std::declval<F>()(std::declval<Real>(), std::declval<Real>())) tanh_sinh_detail<Real, Policy>::integrate(const F f, Real* error, Real* L1, const char* function, Real left_min_complement, Real right_min_complement, Real tolerance, std::size_t* levels) const
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/tanh_sinh.hpp:35:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:9,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:43,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/tanh_sinh_detail.hpp: In member function ‘void boost::math::quadrature::detail::tanh_sinh_detail<Real, Policy>::init(const Real&, const mpl_::int_<0>&)’:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/tanh_sinh_detail.hpp:406:15: error: ‘std::asinh’ has not been declared
using std::asinh;
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/detail/tanh_sinh_detail.hpp:407:15: error: ‘std::atanh’ has not been declared
using std::atanh;
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:9:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:43,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/tanh_sinh.hpp: At global scope:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/tanh_sinh.hpp:47:5: warning: ‘auto’ changes meaning in C++11; please remove it [-Wc++0x-compat]
auto integrate(const F f, Real a, Real b, Real tolerance = tools::root_epsilon<Real>(), Real* error = nullptr, Real* L1 = nullptr, std::size_t* levels = nullptr) ->decltype(std::declval<F>()(std::declval<Real>())) const;
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:9:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:43,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/tanh_sinh.hpp:47:169: error: expected type-specifier before ‘decltype’
auto integrate(const F f, Real a, Real b, Real tolerance = tools::root_epsilon<Real>(), Real* error = nullptr, Real* L1 = nullptr, std::size_t* levels = nullptr) ->decltype(std::declval<F>()(std::declval<Real>())) const;
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/tanh_sinh.hpp:47:169: error: expected initializer before ‘decltype’
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/tanh_sinh.hpp:49:5: warning: ‘auto’ changes meaning in C++11; please remove it [-Wc++0x-compat]
auto integrate(const F f, Real a, Real b, Real tolerance = tools::root_epsilon<Real>(), Real* error = nullptr, Real* L1 = nullptr, std::size_t* levels = nullptr) ->decltype(std::declval<F>()(std::declval<Real>(), std::declval<Real>())) const;
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/tanh_sinh.hpp:49:169: error: expected type-specifier before ‘decltype’
auto integrate(const F f, Real a, Real b, Real tolerance = tools::root_epsilon<Real>(), Real* error = nullptr, Real* L1 = nullptr, std::size_t* levels = nullptr) ->decltype(std::declval<F>()(std::declval<Real>(), std::declval<Real>())) const;
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/tanh_sinh.hpp:49:169: error: expected initializer before ‘decltype’
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/tanh_sinh.hpp:52:5: warning: ‘auto’ changes meaning in C++11; please remove it [-Wc++0x-compat]
auto integrate(const F f, Real tolerance = tools::root_epsilon<Real>(), Real* error = nullptr, Real* L1 = nullptr, std::size_t* levels = nullptr) ->decltype(std::declval<F>()(std::declval<Real>())) const;
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/tanh_sinh.hpp:52:153: error: expected type-specifier before ‘decltype’
auto integrate(const F f, Real tolerance = tools::root_epsilon<Real>(), Real* error = nullptr, Real* L1 = nullptr, std::size_t* levels = nullptr) ->decltype(std::declval<F>()(std::declval<Real>())) const;
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/tanh_sinh.hpp:52:153: error: expected initializer before ‘decltype’
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/tanh_sinh.hpp:54:5: warning: ‘auto’ changes meaning in C++11; please remove it [-Wc++0x-compat]
auto integrate(const F f, Real tolerance = tools::root_epsilon<Real>(), Real* error = nullptr, Real* L1 = nullptr, std::size_t* levels = nullptr) ->decltype(std::declval<F>()(std::declval<Real>(), std::declval<Real>())) const;
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/tanh_sinh.hpp:54:153: error: expected type-specifier before ‘decltype’
auto integrate(const F f, Real tolerance = tools::root_epsilon<Real>(), Real* error = nullptr, Real* L1 = nullptr, std::size_t* levels = nullptr) ->decltype(std::declval<F>()(std::declval<Real>(), std::declval<Real>())) const;
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/tanh_sinh.hpp:54:153: error: expected initializer before ‘decltype’
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/tanh_sinh.hpp:57:10: error: ‘shared_ptr’ in namespace ‘std’ does not name a template type
std::shared_ptr<detail::tanh_sinh_detail<Real, Policy>> m_imp;
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:9:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:43,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/tanh_sinh.hpp: In constructor ‘boost::math::quadrature::tanh_sinh<Real, Policy>::tanh_sinh(size_t, const Real&)’:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/tanh_sinh.hpp:44:7: error: class ‘boost::math::quadrature::tanh_sinh<Real, Policy>’ does not have any field named ‘m_imp’
: m_imp(std::make_shared<detail::tanh_sinh_detail<Real, Policy>>(max_refinements, min_complement)) {}
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/tanh_sinh.hpp:44:13: error: ‘make_shared’ is not a member of ‘std’
: m_imp(std::make_shared<detail::tanh_sinh_detail<Real, Policy>>(max_refinements, min_complement)) {}
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/tanh_sinh.hpp:44:67: error: spurious ‘>>’, use ‘>’ to terminate a template argument list
: m_imp(std::make_shared<detail::tanh_sinh_detail<Real, Policy>>(max_refinements, min_complement)) {}
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:9:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:43,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/tanh_sinh.hpp: At global scope:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/tanh_sinh.hpp:62:1: warning: ‘auto’ changes meaning in C++11; please remove it [-Wc++0x-compat]
auto tanh_sinh<Real, Policy>::integrate(const F f, Real a, Real b, Real tolerance, Real* error, Real* L1, std::size_t* levels) ->decltype(std::declval<F>()(std::declval<Real>())) const
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/tanh_sinh.hpp:62:130: error: expected type-specifier before ‘decltype’
auto tanh_sinh<Real, Policy>::integrate(const F f, Real a, Real b, Real tolerance, Real* error, Real* L1, std::size_t* levels) ->decltype(std::declval<F>()(std::declval<Real>())) const
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/tanh_sinh.hpp:62:130: error: expected initializer before ‘decltype’
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/tanh_sinh.hpp:210:1: warning: ‘auto’ changes meaning in C++11; please remove it [-Wc++0x-compat]
auto tanh_sinh<Real, Policy>::integrate(const F f, Real a, Real b, Real tolerance, Real* error, Real* L1, std::size_t* levels) ->decltype(std::declval<F>()(std::declval<Real>(), std::declval<Real>())) const
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/tanh_sinh.hpp:210:130: error: expected type-specifier before ‘decltype’
auto tanh_sinh<Real, Policy>::integrate(const F f, Real a, Real b, Real tolerance, Real* error, Real* L1, std::size_t* levels) ->decltype(std::declval<F>()(std::declval<Real>(), std::declval<Real>())) const
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/tanh_sinh.hpp:210:130: error: expected initializer before ‘decltype’
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/tanh_sinh.hpp:247:1: warning: ‘auto’ changes meaning in C++11; please remove it [-Wc++0x-compat]
auto tanh_sinh<Real, Policy>::integrate(const F f, Real tolerance, Real* error, Real* L1, std::size_t* levels) ->decltype(std::declval<F>()(std::declval<Real>())) const
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/tanh_sinh.hpp:247:114: error: expected type-specifier before ‘decltype’
auto tanh_sinh<Real, Policy>::integrate(const F f, Real tolerance, Real* error, Real* L1, std::size_t* levels) ->decltype(std::declval<F>()(std::declval<Real>())) const
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/tanh_sinh.hpp:247:114: error: expected initializer before ‘decltype’
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/tanh_sinh.hpp:257:1: warning: ‘auto’ changes meaning in C++11; please remove it [-Wc++0x-compat]
auto tanh_sinh<Real, Policy>::integrate(const F f, Real tolerance, Real* error, Real* L1, std::size_t* levels) ->decltype(std::declval<F>()(std::declval<Real>(), std::declval<Real>())) const
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/tanh_sinh.hpp:257:114: error: expected type-specifier before ‘decltype’
auto tanh_sinh<Real, Policy>::integrate(const F f, Real tolerance, Real* error, Real* L1, std::size_t* levels) ->decltype(std::declval<F>()(std::declval<Real>(), std::declval<Real>())) const
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/quadrature/tanh_sinh.hpp:257:114: error: expected initializer before ‘decltype’
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:43:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp: In function ‘double stan::math::integrate(const F&, double, double, double)’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:59:5: warning: ‘auto’ changes meaning in C++11; please remove it [-Wc++0x-compat]
auto f_wrap = [&](double x) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:59:10: error: ‘f_wrap’ does not name a type
auto f_wrap = [&](double x) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:63:20: error: ‘class boost::math::quadrature::sinh_sinh<double>’ has no member named ‘integrate’
Q = integrator.integrate(f_wrap, tolerance, &error1, &L1, &levels);
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:63:30: error: ‘f_wrap’ was not declared in this scope
Q = integrator.integrate(f_wrap, tolerance, &error1, &L1, &levels);
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:72:7: warning: ‘auto’ changes meaning in C++11; please remove it [-Wc++0x-compat]
auto f_wrap = [&](double x) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:72:12: error: ‘f_wrap’ does not name a type
auto f_wrap = [&](double x) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:75:22: error: ‘class boost::math::quadrature::exp_sinh<double>’ has no member named ‘integrate’
Q = integrator.integrate(f_wrap, tolerance, &error1, &L1, &levels);
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:75:32: error: ‘f_wrap’ was not declared in this scope
Q = integrator.integrate(f_wrap, tolerance, &error1, &L1, &levels);
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:78:7: warning: ‘auto’ changes meaning in C++11; please remove it [-Wc++0x-compat]
auto f_wrap = [&](double x) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:78:12: error: ‘f_wrap’ does not name a type
auto f_wrap = [&](double x) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:81:22: error: ‘class boost::math::quadrature::exp_sinh<double>’ has no member named ‘integrate’
Q = integrator.integrate(f_wrap, tolerance, &error1, &L1, &levels)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:81:32: error: ‘f_wrap’ was not declared in this scope
Q = integrator.integrate(f_wrap, tolerance, &error1, &L1, &levels)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:82:30: error: ‘class boost::math::quadrature::tanh_sinh<double>’ has no member named ‘integrate’
+ integrator_right.integrate(f_wrap, -b, 0, tolerance, &error2, &L2,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:89:7: warning: ‘auto’ changes meaning in C++11; please remove it [-Wc++0x-compat]
auto f_wrap = [&](double x) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:89:12: error: ‘f_wrap’ does not name a type
auto f_wrap = [&](double x) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:92:22: error: ‘class boost::math::quadrature::exp_sinh<double>’ has no member named ‘integrate’
Q = integrator.integrate(f_wrap, tolerance, &error1, &L1, &levels);
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:92:32: error: ‘f_wrap’ was not declared in this scope
Q = integrator.integrate(f_wrap, tolerance, &error1, &L1, &levels);
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:95:7: warning: ‘auto’ changes meaning in C++11; please remove it [-Wc++0x-compat]
auto f_wrap = [&](double x) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:95:12: error: ‘f_wrap’ does not name a type
auto f_wrap = [&](double x) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:98:22: error: ‘class boost::math::quadrature::exp_sinh<double>’ has no member named ‘integrate’
Q = integrator.integrate(f_wrap, tolerance, &error1, &L1, &levels)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:98:32: error: ‘f_wrap’ was not declared in this scope
Q = integrator.integrate(f_wrap, tolerance, &error1, &L1, &levels)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:99:30: error: ‘class boost::math::quadrature::tanh_sinh<double>’ has no member named ‘integrate’
+ integrator_right.integrate(f_wrap, a, 0, tolerance, &error2, &L2,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:104:5: warning: ‘auto’ changes meaning in C++11; please remove it [-Wc++0x-compat]
auto f_wrap = [&](double x, double xc) { return f(x, xc); };
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:104:10: error: ‘f_wrap’ does not name a type
auto f_wrap = [&](double x, double xc) { return f(x, xc); };
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:107:22: error: ‘class boost::math::quadrature::tanh_sinh<double>’ has no member named ‘integrate’
Q = integrator.integrate(f_wrap, a, 0.0, tolerance, &error1, &L1, &levels)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:107:32: error: ‘f_wrap’ was not declared in this scope
Q = integrator.integrate(f_wrap, a, 0.0, tolerance, &error1, &L1, &levels)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:108:24: error: ‘class boost::math::quadrature::tanh_sinh<double>’ has no member named ‘integrate’
+ integrator.integrate(f_wrap, 0.0, b, tolerance, &error2, &L2,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:112:22: error: ‘class boost::math::quadrature::tanh_sinh<double>’ has no member named ‘integrate’
Q = integrator.integrate(f_wrap, a, b, tolerance, &error1, &L1, &levels);
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:112:32: error: ‘f_wrap’ was not declared in this scope
Q = integrator.integrate(f_wrap, a, b, tolerance, &error1, &L1, &levels);
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp: In function ‘double stan::math::integrate_1d(const F&, double, double, const std::vector<double>&, const std::vector<double>&, const std::vector<int>&, std::ostream&, double)’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:193:9: error: ‘bind’ is not a member of ‘std’
std::bind<double>(f, std::placeholders::_1, std::placeholders::_2,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:193:9: note: suggested alternative:
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/mpl/aux_/include_preprocessed.hpp:37:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/mpl/bind_fwd.hpp:32,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/mpl/bind.hpp:23,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/mpl/lambda.hpp:18,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/mpl/apply.hpp:25,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/mpl/aux_/iter_apply.hpp:17,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/mpl/aux_/find_if_pred.hpp:14,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/mpl/find_if.hpp:17,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/mpl/find.hpp:17,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/mpl/aux_/contains_impl.hpp:20,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/mpl/contains.hpp:20,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/policies/policy.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/special_functions/math_fwd.hpp:29,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/special_functions/fpclassify.hpp:19,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:14,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/mpl/aux_/preprocessed/gcc/bind_fwd.hpp:18:8: note: ‘boost::mpl::bind’
struct bind;
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:43:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_1d.hpp:193:19: error: expected primary-expression before ‘double’
std::bind<double>(f, std::placeholders::_1, std::placeholders::_2,
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:44:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp: At global scope:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:73:41: error: ‘nullptr’ was not declared in this scope
std::ostream* msgs = nullptr,
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal.hpp:73:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:49,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/choose.hpp: In function ‘int stan::math::choose(int, int)’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/choose.hpp:38:27: error: ‘round’ is not a member of ‘std’
return static_cast<int>(std::round(choices));
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/choose.hpp:38:27: note: suggested alternatives:
In file included from /usr/include/features.h:367:0,
from /usr/include/x86_64-linux-gnu/c++/5/bits/os_defines.h:39,
from /usr/include/x86_64-linux-gnu/c++/5/bits/c++config.h:482,
from /usr/include/c++/5/cmath:41,
from /home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include/Rcpp/platform/compiler.h:100,
from /home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include/Rcpp/r/headers.h:59,
from /home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include/RcppCommon.h:29,
from /home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include/Rcpp.h:27,
from stan_files/mmlm_code.cc:1:
/usr/include/x86_64-linux-gnu/bits/mathcalls.h:319:1: note: ‘round’
__MATHCALLX (round,, (_Mdouble_ __x), (__const__));
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include/Rcpp/sugar/block/block.h:26:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include/Rcpp/sugar/sugar.h:26,
from /home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include/Rcpp.h:74,
from stan_files/mmlm_code.cc:1:
/home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include/Rcpp/sugar/functions/math.h:69:15: note: ‘Rcpp::round’
SUGAR_BLOCK_2(round, ::Rf_fround) // rounds 'x' to 'digits' decimals digits (used by R's round())
^
/home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include/Rcpp/sugar/block/SugarBlock_2.h:116:9: note: in definition of macro ‘SUGAR_BLOCK_2’
__NAME__( \
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:205:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/round.hpp:31:60: note: ‘stan::math::round’
inline typename apply_scalar_unary<round_fun, T>::return_t round(const T& x) {
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/round.hpp:6:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/round.hpp:5,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:205,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/special_functions/round.hpp:68:46: note: ‘boost::math::round’
inline typename tools::promote_args<T>::type round(const T& v)
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/special_functions/round.hpp:55:46: note: ‘boost::math::detail::round’
inline typename tools::promote_args<T>::type round(const T& v, const Policy&, const mpl::true_)
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/RcppEigen/include/Eigen/Core:533:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/core.hpp:14,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/RcppEigen/include/Eigen/src/Core/GlobalFunctions.h:84:36: note: ‘Eigen::round’
EIGEN_ARRAY_DECLARE_GLOBAL_UNARY(round,scalar_round_op,nearest integer,\sa Eigen::floor DOXCOMMA Eigen::ceil DOXCOMMA ArrayBase::round)
^
/home/biocbuild/bbs-3.8-bioc/R/library/RcppEigen/include/Eigen/src/Core/GlobalFunctions.h:32:4: note: in definition of macro ‘EIGEN_ARRAY_DECLARE_GLOBAL_UNARY’
(NAME)(const Eigen::ArrayBase<Derived>& x) { \
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/RcppEigen/include/Eigen/Core:371:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/Eigen_NumTraits.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/core/matrix_vari.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/core.hpp:14,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/RcppEigen/include/Eigen/src/Core/MathFunctions.h:954:45: note: ‘Eigen::numext::round’
inline EIGEN_MATHFUNC_RETVAL(round, Scalar) round(const Scalar& x)
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal.hpp:95:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:49,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/grad_2F1.hpp: In function ‘void stan::math::grad_2F1(T&, T&, const T&, const T&, const T&, const T&, const T&, int)’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/grad_2F1.hpp:47:8: warning: ‘auto’ changes meaning in C++11; please remove it [-Wc++0x-compat]
for (auto& i : log_g_old)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/grad_2F1.hpp:47:14: error: ISO C++ forbids declaration of ‘i’ with no type [-fpermissive]
for (auto& i : log_g_old)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/grad_2F1.hpp:47:18: warning: range-based ‘for’ loops only available with -std=c++11 or -std=gnu++11
for (auto& i : log_g_old)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/grad_2F1.hpp:58:20: warning: range-based ‘for’ loops only available with -std=c++11 or -std=gnu++11
for (double& x : log_g_old_sign)
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal.hpp:96:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:49,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/grad_F32.hpp: In function ‘void stan::math::grad_F32(T*, const T&, const T&, const T&, const T&, const T&, const T&, const T&, int)’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/grad_F32.hpp:49:8: warning: ‘auto’ changes meaning in C++11; please remove it [-Wc++0x-compat]
for (auto& x : log_g_old)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/grad_F32.hpp:49:14: error: ISO C++ forbids declaration of ‘x’ with no type [-fpermissive]
for (auto& x : log_g_old)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/grad_F32.hpp:49:18: warning: range-based ‘for’ loops only available with -std=c++11 or -std=gnu++11
for (auto& x : log_g_old)
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal.hpp:198:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:49,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/beta_binomial_rng.hpp: In function ‘typename stan::VectorBuilder<true, int, T_N, T_shape1, T_shape2>::type stan::math::beta_binomial_rng(const T_N&, const T_shape1&, const T_shape2&, RNG&)’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/beta_binomial_rng.hpp:43:3: warning: ‘auto’ changes meaning in C++11; please remove it [-Wc++0x-compat]
auto p = beta_rng(alpha, beta, rng);
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/beta_binomial_rng.hpp:43:8: error: ‘p’ does not name a type
auto p = beta_rng(alpha, beta, rng);
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/beta_binomial_rng.hpp:44:26: error: ‘p’ was not declared in this scope
return binomial_rng(N, p, rng);
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/arr.hpp:14:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:13,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/arr/functor/integrate_1d.hpp: In function ‘stan::math::var stan::math::integrate_1d(const F&, const T_a&, const T_b&, const std::vector<T_l>&, const std::vector<double>&, const std::vector<int>&, std::ostream&, double)’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/arr/functor/integrate_1d.hpp:115:9: error: ‘bind’ is not a member of ‘std’
std::bind<double>(f, std::placeholders::_1, std::placeholders::_2,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/arr/functor/integrate_1d.hpp:115:9: note: suggested alternatives:
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/bind.hpp:22:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/numeric/odeint/util/bind.hpp:28,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/numeric/odeint/stepper/base/explicit_stepper_base.hpp:26,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/numeric/odeint/stepper/euler.hpp:23,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/numeric/odeint.hpp:27,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:44,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/bind/bind.hpp:1868:20: note: ‘boost::bind’
#define BOOST_BIND bind
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/bind/bind.hpp:2342:1: note: in expansion of macro ‘BOOST_BIND’
BOOST_BIND( M T::*f, A1 a1 )
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/mpl/aux_/include_preprocessed.hpp:37:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/mpl/bind_fwd.hpp:32,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/mpl/bind.hpp:23,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/mpl/lambda.hpp:18,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/mpl/apply.hpp:25,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/mpl/aux_/iter_apply.hpp:17,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/mpl/aux_/find_if_pred.hpp:14,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/mpl/find_if.hpp:17,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/mpl/find.hpp:17,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/mpl/aux_/contains_impl.hpp:20,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/mpl/contains.hpp:20,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/policies/policy.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/special_functions/math_fwd.hpp:29,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/special_functions/fpclassify.hpp:19,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:14,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/mpl/aux_/preprocessed/gcc/bind_fwd.hpp:18:8: note: ‘boost::mpl::bind’
struct bind;
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/bind.hpp:22:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/numeric/odeint/util/bind.hpp:28,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/numeric/odeint/stepper/base/explicit_stepper_base.hpp:26,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/numeric/odeint/stepper/euler.hpp:23,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/numeric/odeint.hpp:27,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:44,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/bind/bind.hpp:1868:20: note: ‘boost::bind’
#define BOOST_BIND bind
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/bind/bind.hpp:1875:5: note: in expansion of macro ‘BOOST_BIND’
BOOST_BIND(F f)
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/bind/bind.hpp:1868:20: note: ‘boost::bind’
#define BOOST_BIND bind
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/bind/bind.hpp:1875:5: note: in expansion of macro ‘BOOST_BIND’
BOOST_BIND(F f)
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/arr.hpp:14:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:13,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/arr/functor/integrate_1d.hpp:115:19: error: expected primary-expression before ‘double’
std::bind<double>(f, std::placeholders::_1, std::placeholders::_2,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/arr/functor/integrate_1d.hpp:128:13: error: ‘bind’ is not a member of ‘std’
std::bind<double>(gradient_of_f<F>, f, std::placeholders::_1,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/arr/functor/integrate_1d.hpp:128:13: note: suggested alternatives:
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/bind.hpp:22:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/numeric/odeint/util/bind.hpp:28,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/numeric/odeint/stepper/base/explicit_stepper_base.hpp:26,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/numeric/odeint/stepper/euler.hpp:23,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/numeric/odeint.hpp:27,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:44,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/bind/bind.hpp:1868:20: note: ‘boost::bind’
#define BOOST_BIND bind
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/bind/bind.hpp:2342:1: note: in expansion of macro ‘BOOST_BIND’
BOOST_BIND( M T::*f, A1 a1 )
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/mpl/aux_/include_preprocessed.hpp:37:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/mpl/bind_fwd.hpp:32,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/mpl/bind.hpp:23,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/mpl/lambda.hpp:18,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/mpl/apply.hpp:25,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/mpl/aux_/iter_apply.hpp:17,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/mpl/aux_/find_if_pred.hpp:14,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/mpl/find_if.hpp:17,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/mpl/find.hpp:17,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/mpl/aux_/contains_impl.hpp:20,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/mpl/contains.hpp:20,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/policies/policy.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/special_functions/math_fwd.hpp:29,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/math/special_functions/fpclassify.hpp:19,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:14,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/mpl/aux_/preprocessed/gcc/bind_fwd.hpp:18:8: note: ‘boost::mpl::bind’
struct bind;
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/bind.hpp:22:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/numeric/odeint/util/bind.hpp:28,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/numeric/odeint/stepper/base/explicit_stepper_base.hpp:26,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/numeric/odeint/stepper/euler.hpp:23,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/numeric/odeint.hpp:27,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:44,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/bind/bind.hpp:1868:20: note: ‘boost::bind’
#define BOOST_BIND bind
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/bind/bind.hpp:1875:5: note: in expansion of macro ‘BOOST_BIND’
BOOST_BIND(F f)
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/bind/bind.hpp:1868:20: note: ‘boost::bind’
#define BOOST_BIND bind
^
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/bind/bind.hpp:1875:5: note: in expansion of macro ‘BOOST_BIND’
BOOST_BIND(F f)
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/arr.hpp:14:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:13,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/arr/functor/integrate_1d.hpp:128:23: error: expected primary-expression before ‘double’
std::bind<double>(gradient_of_f<F>, f, std::placeholders::_1,
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:24:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/gp_periodic_cov.hpp: At global scope:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/gp_periodic_cov.hpp:305:54: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
Eigen::Matrix<var, Eigen::Dynamic, Eigen::Dynamic>>::type
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/gp_periodic_cov.hpp:305:54: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/gp_periodic_cov.hpp:305:56: error: ‘::type’ has not been declared
Eigen::Matrix<var, Eigen::Dynamic, Eigen::Dynamic>>::type
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/gp_periodic_cov.hpp:305:56: note: suggested alternatives:
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/numeric/conversion/cast.hpp:32:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/date_time/posix_time/posix_time_duration.hpp:15,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/date_time/posix_time/posix_time_types.hpp:16,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:13,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/type.hpp:14:10: note: ‘boost::type’
struct type {};
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/bind.hpp:22:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/numeric/odeint/util/bind.hpp:28,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/numeric/odeint/stepper/base/explicit_stepper_base.hpp:26,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/numeric/odeint/stepper/euler.hpp:23,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/numeric/odeint.hpp:27,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:44,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/bind/bind.hpp:146:25: note: ‘boost::_bi::type’
template<class T> class type {};
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:24:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/gp_periodic_cov.hpp:307:29: error: template argument 3 is invalid
const var &p) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/gp_periodic_cov.hpp:307:29: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/gp_periodic_cov.hpp:307:29: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/gp_periodic_cov.hpp:307:31: warning: extended initializer lists only available with -std=c++11 or -std=gnu++11
const var &p) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/gp_periodic_cov.hpp:305:12: error: template argument 2 is invalid
Eigen::Matrix<var, Eigen::Dynamic, Eigen::Dynamic>>::type
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/gp_periodic_cov.hpp:307:31: error: expected identifier before ‘{’ token
const var &p) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/gp_periodic_cov.hpp:307:31: error: expected unqualified-id before ‘{’ token
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/gp_periodic_cov.hpp:357:54: warning: ‘>>’ operator is treated as two right angle brackets in C++11 [-Wc++0x-compat]
Eigen::Matrix<var, Eigen::Dynamic, Eigen::Dynamic>>::type
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/gp_periodic_cov.hpp:357:54: note: suggest parentheses around ‘>>’ expression
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/gp_periodic_cov.hpp:357:56: error: ‘::type’ has not been declared
Eigen::Matrix<var, Eigen::Dynamic, Eigen::Dynamic>>::type
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/gp_periodic_cov.hpp:357:56: note: suggested alternatives:
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/numeric/conversion/cast.hpp:32:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/date_time/posix_time/posix_time_duration.hpp:15,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/date_time/posix_time/posix_time_types.hpp:16,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:13,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/type.hpp:14:10: note: ‘boost::type’
struct type {};
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/bind.hpp:22:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/numeric/odeint/util/bind.hpp:28,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/numeric/odeint/stepper/base/explicit_stepper_base.hpp:26,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/numeric/odeint/stepper/euler.hpp:23,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/numeric/odeint.hpp:27,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr/functor/integrate_ode_rk45.hpp:17,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:44,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/bind/bind.hpp:146:25: note: ‘boost::_bi::type’
template<class T> class type {};
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:24:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/gp_periodic_cov.hpp:359:29: error: template argument 3 is invalid
const var &p) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/gp_periodic_cov.hpp:359:29: error: template argument 4 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/gp_periodic_cov.hpp:359:29: error: template argument 6 is invalid
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/gp_periodic_cov.hpp:359:31: warning: extended initializer lists only available with -std=c++11 or -std=gnu++11
const var &p) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/gp_periodic_cov.hpp:357:12: error: template argument 2 is invalid
Eigen::Matrix<var, Eigen::Dynamic, Eigen::Dynamic>>::type
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/gp_periodic_cov.hpp:359:31: error: expected identifier before ‘{’ token
const var &p) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/gp_periodic_cov.hpp:359:31: error: expected unqualified-id before ‘{’ token
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:39:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp: In member function ‘virtual void stan::math::multiply_mat_vari<Ta, 1, Ca, Tb, 1>::chain()’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:190:5: warning: ‘auto’ changes meaning in C++11; please remove it [-Wc++0x-compat]
auto adjA = adjAB * Map<VectorXd>(Bd_, size_, 1).transpose();
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:190:10: error: ‘adjA’ does not name a type
auto adjA = adjAB * Map<VectorXd>(Bd_, size_, 1).transpose();
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:191:5: warning: ‘auto’ changes meaning in C++11; please remove it [-Wc++0x-compat]
auto adjB = Map<RowVectorXd>(Ad_, 1, size_).transpose() * adjAB;
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:191:10: error: ‘adjB’ does not name a type
auto adjB = Map<RowVectorXd>(Ad_, 1, size_).transpose() * adjAB;
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:193:35: error: there are no arguments to ‘adjA’ that depend on a template parameter, so a declaration of ‘adjA’ must be available [-fpermissive]
variRefA_[i]->adj_ += adjA(i);
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:193:35: note: (if you use ‘-fpermissive’, G++ will accept your code, but allowing the use of an undeclared name is deprecated)
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:195:35: error: there are no arguments to ‘adjB’ that depend on a template parameter, so a declaration of ‘adjB’ must be available [-fpermissive]
variRefB_[i]->adj_ += adjB(i);
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp: In member function ‘virtual void stan::math::multiply_mat_vari<double, 1, Ca, Tb, 1>::chain()’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:355:5: warning: ‘auto’ changes meaning in C++11; please remove it [-Wc++0x-compat]
auto adjB = Map<RowVectorXd>(Ad_, 1, size_).transpose() * adjAB;
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:355:10: error: ‘adjB’ does not name a type
auto adjB = Map<RowVectorXd>(Ad_, 1, size_).transpose() * adjAB;
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:357:35: error: there are no arguments to ‘adjB’ that depend on a template parameter, so a declaration of ‘adjB’ must be available [-fpermissive]
variRefB_[i]->adj_ += adjB(i);
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp: In member function ‘virtual void stan::math::multiply_mat_vari<Ta, 1, Ca, double, 1>::chain()’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:520:5: warning: ‘auto’ changes meaning in C++11; please remove it [-Wc++0x-compat]
auto adjA = adjAB * Map<VectorXd>(Bd_, size_, 1).transpose();
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:520:10: error: ‘adjA’ does not name a type
auto adjA = adjAB * Map<VectorXd>(Bd_, size_, 1).transpose();
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/multiply.hpp:522:35: error: there are no arguments to ‘adjA’ that depend on a template parameter, so a declaration of ‘adjA’ must be available [-fpermissive]
variRefA_[i]->adj_ += adjA(i);
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/sum.hpp:7:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:49,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/arr/fun/sum.hpp: In static member function ‘static double stan::math::sum_v_vari::sum_of_val(const std::vector<stan::math::var>&)’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/arr/fun/sum.hpp:21:10: warning: ‘auto’ changes meaning in C++11; please remove it [-Wc++0x-compat]
for (auto x : v)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/arr/fun/sum.hpp:21:15: error: ‘x’ does not name a type
for (auto x : v)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/arr/fun/sum.hpp:23:5: error: expected ‘;’ before ‘return’
return result;
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/arr/fun/sum.hpp:23:5: error: expected primary-expression before ‘return’
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/arr/fun/sum.hpp:23:5: error: expected ‘;’ before ‘return’
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/arr/fun/sum.hpp:23:5: error: expected primary-expression before ‘return’
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/arr/fun/sum.hpp:23:5: error: expected ‘)’ before ‘return’
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:58:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/algebra_solver.hpp: At global scope:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/algebra_solver.hpp:127:59: error: ‘nullptr’ was not declared in this scope
const std::vector<int>& dat_int, std::ostream* msgs = nullptr,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/algebra_solver.hpp: In function ‘Eigen::VectorXd stan::math::algebra_solver(const F&, const Eigen::Matrix<RhsScalar, -1, 1>&, const VectorXd&, const std::vector<double>&, const std::vector<int>&, std::ostream*, double, double, long int)’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/algebra_solver.hpp:135:19: warning: range-based ‘for’ loops only available with -std=c++11 or -std=gnu++11
for (double i : dat)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/algebra_solver.hpp:137:16: warning: range-based ‘for’ loops only available with -std=c++11 or -std=gnu++11
for (int x : dat_int)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/algebra_solver.hpp:155:27: warning: name lookup of ‘x’ changed
Fx fx(Fs(), f, value_of(x), y, dat, dat_int, msgs);
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/algebra_solver.hpp:125:60: warning: matches this ‘x’ under ISO standard rules
const F& f, const Eigen::Matrix<T, Eigen::Dynamic, 1>& x,
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/algebra_solver.hpp:137:12: warning: matches this ‘x’ under old rules
for (int x : dat_int)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/algebra_solver.hpp: At global scope:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/algebra_solver.hpp:240:26: error: ‘nullptr’ was not declared in this scope
std::ostream* msgs = nullptr, double relative_tolerance = 1e-10,
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:61:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/cvodes_utils.hpp: In function ‘void stan::math::cvodes_set_options(void*, double, double, long int)’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/cvodes_utils.hpp:33:63: error: ‘nullptr’ was not declared in this scope
CVodeSetErrHandlerFn(cvodes_mem, cvodes_silent_err_handler, nullptr);
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:62:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/cvodes_ode_data.hpp: In constructor ‘stan::math::cvodes_ode_data<F, T_initial, T_param>::cvodes_ode_data(const F&, const std::vector<T2>&, const std::vector<T_l>&, const std::vector<double>&, const std::vector<int>&, std::ostream*)’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/cvodes_ode_data.hpp:92:24: error: ‘nullptr’ was not declared in this scope
nv_state_sens_(nullptr),
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/integrate_ode_adams.hpp:4:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:63,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/cvodes_integrator.hpp: In member function ‘std::vector<std::vector<typename stan::return_type<T_initial, T_param>::type> > stan::math::cvodes_integrator<Lmm>::integrate(const F&, const std::vector<T_initial>&, double, const std::vector<double>&, const std::vector<T_param>&, const std::vector<double>&, const std::vector<int>&, std::ostream*, double, double, long int)’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/cvodes_integrator.hpp:112:23: error: ‘nullptr’ was not declared in this scope
if (cvodes_mem == nullptr)
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:63:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/integrate_ode_adams.hpp: At global scope:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/integrate_ode_adams.hpp:17:42: error: ‘nullptr’ was not declared in this scope
std::ostream* msgs = nullptr,
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:64:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/integrate_ode_bdf.hpp:17:40: error: ‘nullptr’ was not declared in this scope
std::ostream* msgs = nullptr,
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:65:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/map_rect_reduce.hpp:22:44: error: ‘nullptr’ was not declared in this scope
std::ostream* msgs = nullptr) const {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/map_rect_reduce.hpp:64:44: error: ‘nullptr’ was not declared in this scope
std::ostream* msgs = nullptr) const {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/functor/map_rect_reduce.hpp:100:44: error: ‘nullptr’ was not declared in this scope
std::ostream* msgs = nullptr) const {
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:12:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/util/initialize.hpp:75:43: error: no default argument for ‘Model’
init_writer) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/util/initialize.hpp:75:43: error: no default argument for ‘RNG’
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/util/initialize.hpp:75:43: error: default template arguments may not be used in function templates without -std=c++11 or -std=gnu++11
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:51:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/sample/standalone_gqs.hpp: In function ‘int stan::services::standalone_generate(const Model&, const std::vector<std::vector<double> >&, unsigned int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&)’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/sample/standalone_gqs.hpp:75:46: warning: range-based ‘for’ loops only available with -std=c++11 or -std=gnu++11
for (const std::vector<double>& draw : draws) {
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3:0,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp: In function ‘int rstan::{anonymous}::command(rstan::stan_args&, Model&, Rcpp::List&, const std::vector<long unsigned int>&, const std::vector<std::__cxx11::basic_string<char> >&, RNG_t&)’:
/home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:400:24: error: ‘nullptr’ was not declared in this scope
std::ostream nullout(nullptr);
^
/home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:446:3: error: ‘unique_ptr’ is not a member of ‘std’
std::unique_ptr<stan::io::var_context> init_context_ptr;
^
/home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:446:3: note: suggested alternative:
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:28:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/date_time/time_clock.hpp:17,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/date_time/posix_time/posix_time_types.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:13,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:57:36: note: ‘boost::movelib::unique_ptr’
template< class T, class D > class unique_ptr;
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3:0,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:446:40: error: expected primary-expression before ‘>’ token
std::unique_ptr<stan::io::var_context> init_context_ptr;
^
/home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:446:42: error: ‘init_context_ptr’ was not declared in this scope
std::unique_ptr<stan::io::var_context> init_context_ptr;
^
/home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:552:5: error: ‘unique_ptr’ is not a member of ‘std’
std::unique_ptr<rstan_sample_writer> sample_writer_ptr;
^
/home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:552:5: note: suggested alternative:
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:28:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/date_time/time_clock.hpp:17,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/date_time/posix_time/posix_time_types.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:13,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:57:36: note: ‘boost::movelib::unique_ptr’
template< class T, class D > class unique_ptr;
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3:0,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:552:40: error: expected primary-expression before ‘>’ token
std::unique_ptr<rstan_sample_writer> sample_writer_ptr;
^
/home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:552:42: error: ‘sample_writer_ptr’ was not declared in this scope
std::unique_ptr<rstan_sample_writer> sample_writer_ptr;
^
/home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp: In member function ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::standalone_gqs(SEXP, SEXP)’:
/home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1217:5: error: ‘unique_ptr’ is not a member of ‘std’
std::unique_ptr<rstan_sample_writer> sample_writer_ptr;
^
/home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1217:5: note: suggested alternative:
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/smart_ptr/shared_ptr.hpp:28:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/shared_ptr.hpp:17,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/date_time/time_clock.hpp:17,
from /home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/date_time/posix_time/posix_time_types.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:13,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/BH/include/boost/smart_ptr/detail/shared_count.hpp:57:36: note: ‘boost::movelib::unique_ptr’
template< class T, class D > class unique_ptr;
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3:0,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1217:40: error: expected primary-expression before ‘>’ token
std::unique_ptr<rstan_sample_writer> sample_writer_ptr;
^
/home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1217:42: error: ‘sample_writer_ptr’ was not declared in this scope
std::unique_ptr<rstan_sample_writer> sample_writer_ptr;
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal.hpp:95:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:49,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/grad_2F1.hpp: In instantiation of ‘void stan::math::grad_2F1(T&, T&, const T&, const T&, const T&, const T&, const T&, int) [with T = double]’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/grad_inc_beta.hpp:29:44: required from here
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/grad_2F1.hpp:48:7: error: use of local variable with automatic storage from containing function
i = -std::numeric_limits<T>::infinity();
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/grad_2F1.hpp:47:14: note: ‘int& i’ declared here
for (auto& i : log_g_old)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/grad_2F1.hpp:59:7: error: use of local variable with automatic storage from containing function
x = 1.0;
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/grad_2F1.hpp:58:16: note: ‘double& x’ declared here
for (double& x : log_g_old_sign)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/grad_2F1.hpp: In instantiation of ‘void stan::math::grad_2F1(T&, T&, const T&, const T&, const T&, const T&, const T&, int) [with T = stan::math::var]’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/scal/fun/grad_inc_beta.hpp:45:49: required from here
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/grad_2F1.hpp:48:7: error: use of local variable with automatic storage from containing function
i = -std::numeric_limits<T>::infinity();
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/grad_2F1.hpp:47:14: note: ‘int& i’ declared here
for (auto& i : log_g_old)
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/grad_2F1.hpp:59:7: error: use of local variable with automatic storage from containing function
x = 1.0;
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/grad_2F1.hpp:58:16: note: ‘double& x’ declared here
for (double& x : log_g_old_sign)
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp.hpp:5:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:161,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_2x2.hpp: In instantiation of ‘Mtype stan::math::matrix_exp_2x2(const Mtype&) [with Mtype = Eigen::Matrix<stan::math::var, -1, -1>]’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp.hpp:29:30: required from ‘Eigen::Matrix<LhsScalar, -1, -1, 0> stan::math::matrix_exp(const Eigen::Matrix<LhsScalar, -1, -1, 0>&) [with T = stan::math::var]’
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/matrix_exp_multiply.hpp:71:24: required from here
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/matrix_exp_2x2.hpp:25:58: warning: left operand of comma operator has no effect [-Wunused-value]
Eigen::Matrix<T, Eigen::Dynamic, Eigen::Dynamic> B(2, 2);
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/fun/gp_dot_prod_cov.hpp:11:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:131,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/dot_product.hpp: In instantiation of ‘stan::math::{anonymous}::dot_product_vari<T1, T2>::dot_product_vari(const Eigen::Matrix<T1, R1, C1>&, const Eigen::Matrix<T2, R2, C2>&, stan::math::{anonymous}::dot_product_vari<T1, T2>*, stan::math::{anonymous}::dot_product_vari<T1, T2>*) [with int R1 = 1; int C1 = -1; int R2 = 1; int C2 = -1; T1 = stan::math::var; T2 = stan::math::var]’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/dot_product.hpp:206:50: required from ‘typename boost::enable_if_c<(boost::is_same<T1, stan::math::var>::value || boost::is_same<T2, stan::math::var>::value), stan::math::var>::type stan::math::dot_product(const Eigen::Matrix<T, R, C>&, const Eigen::Matrix<T2, R2, C2>&) [with T1 = stan::math::var; int R1 = 1; int C1 = -1; T2 = stan::math::var; int R2 = 1; int C2 = -1; typename boost::enable_if_c<(boost::is_same<T1, stan::math::var>::value || boost::is_same<T2, stan::math::var>::value), stan::math::var>::type = stan::math::var]’
stan_files/mmlm_code.hpp:882:81: required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:45:39: required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_mmlm_code_namespace::model_mmlm_code; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1168:49: required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014u, 0u, 2147483563u>, boost::random::linear_congruential_engine<unsigned int, 40692u, 0u, 2147483399u> >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:21:88: required from here
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/dot_product.hpp:176:17: error: call to ‘void stan::math::{anonymous}::dot_product_vari<T1, T2>::initialize(stan::math::vari**&, const Eigen::DenseBase<OtherDerived>&, stan::math::vari**) [with Derived = Eigen::Matrix<stan::math::var, 1, -1>; T1 = stan::math::var; T2 = stan::math::var]’ uses the default argument for parameter 3, which is not yet defined
initialize(v1_, v1);
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/dot_product.hpp:181:17: error: call to ‘void stan::math::{anonymous}::dot_product_vari<T1, T2>::initialize(stan::math::vari**&, const Eigen::DenseBase<OtherDerived>&, stan::math::vari**) [with Derived = Eigen::Matrix<stan::math::var, 1, -1>; T1 = stan::math::var; T2 = stan::math::var]’ uses the default argument for parameter 3, which is not yet defined
initialize(v2_, v2);
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/dot_product.hpp: In instantiation of ‘stan::math::{anonymous}::dot_product_vari<T1, T2>::dot_product_vari(const Eigen::Matrix<T1, R1, C1>&, const Eigen::Matrix<T2, R2, C2>&, stan::math::{anonymous}::dot_product_vari<T1, T2>*, stan::math::{anonymous}::dot_product_vari<T1, T2>*) [with int R1 = -1; int C1 = 1; int R2 = -1; int C2 = 1; T1 = stan::math::var; T2 = stan::math::var]’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/dot_product.hpp:206:50: required from ‘typename boost::enable_if_c<(boost::is_same<T1, stan::math::var>::value || boost::is_same<T2, stan::math::var>::value), stan::math::var>::type stan::math::dot_product(const Eigen::Matrix<T, R, C>&, const Eigen::Matrix<T2, R2, C2>&) [with T1 = stan::math::var; int R1 = -1; int C1 = 1; T2 = stan::math::var; int R2 = -1; int C2 = 1; typename boost::enable_if_c<(boost::is_same<T1, stan::math::var>::value || boost::is_same<T2, stan::math::var>::value), stan::math::var>::type = stan::math::var]’
stan_files/mmlm_code.hpp:894:80: required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:45:39: required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_mmlm_code_namespace::model_mmlm_code; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1168:49: required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014u, 0u, 2147483563u>, boost::random::linear_congruential_engine<unsigned int, 40692u, 0u, 2147483399u> >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:21:88: required from here
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/dot_product.hpp:176:17: error: call to ‘void stan::math::{anonymous}::dot_product_vari<T1, T2>::initialize(stan::math::vari**&, const Eigen::DenseBase<OtherDerived>&, stan::math::vari**) [with Derived = Eigen::Matrix<stan::math::var, -1, 1>; T1 = stan::math::var; T2 = stan::math::var]’ uses the default argument for parameter 3, which is not yet defined
initialize(v1_, v1);
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/dot_product.hpp:181:17: error: call to ‘void stan::math::{anonymous}::dot_product_vari<T1, T2>::initialize(stan::math::vari**&, const Eigen::DenseBase<OtherDerived>&, stan::math::vari**) [with Derived = Eigen::Matrix<stan::math::var, -1, 1>; T1 = stan::math::var; T2 = stan::math::var]’ uses the default argument for parameter 3, which is not yet defined
initialize(v2_, v2);
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/dot_product.hpp: In instantiation of ‘stan::math::{anonymous}::dot_product_vari<T1, T2>::dot_product_vari(const Eigen::Matrix<T1, R1, C1>&, const Eigen::Matrix<T2, R2, C2>&, stan::math::{anonymous}::dot_product_vari<T1, T2>*, stan::math::{anonymous}::dot_product_vari<T1, T2>*) [with int R1 = 1; int C1 = -1; int R2 = 1; int C2 = -1; T1 = double; T2 = stan::math::var]’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/dot_product.hpp:206:50: required from ‘typename boost::enable_if_c<(boost::is_same<T1, stan::math::var>::value || boost::is_same<T2, stan::math::var>::value), stan::math::var>::type stan::math::dot_product(const Eigen::Matrix<T, R, C>&, const Eigen::Matrix<T2, R2, C2>&) [with T1 = double; int R1 = 1; int C1 = -1; T2 = stan::math::var; int R2 = 1; int C2 = -1; typename boost::enable_if_c<(boost::is_same<T1, stan::math::var>::value || boost::is_same<T2, stan::math::var>::value), stan::math::var>::type = stan::math::var]’
stan_files/mmlm_code.hpp:901:41: required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:45:39: required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_mmlm_code_namespace::model_mmlm_code; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1168:49: required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014u, 0u, 2147483563u>, boost::random::linear_congruential_engine<unsigned int, 40692u, 0u, 2147483399u> >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:21:88: required from here
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/dot_product.hpp:176:17: error: call to ‘void stan::math::{anonymous}::dot_product_vari<T1, T2>::initialize(double*&, const Eigen::DenseBase<OtherDerived>&, double*) [with Derived = Eigen::Matrix<double, 1, -1>; T1 = double; T2 = stan::math::var]’ uses the default argument for parameter 3, which is not yet defined
initialize(v1_, v1);
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/dot_product.hpp:181:17: error: call to ‘void stan::math::{anonymous}::dot_product_vari<T1, T2>::initialize(stan::math::vari**&, const Eigen::DenseBase<OtherDerived>&, stan::math::vari**) [with Derived = Eigen::Matrix<stan::math::var, 1, -1>; T1 = double; T2 = stan::math::var]’ uses the default argument for parameter 3, which is not yet defined
initialize(v2_, v2);
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/dot_product.hpp: In instantiation of ‘stan::math::{anonymous}::dot_product_vari<T1, T2>::dot_product_vari(const Eigen::Matrix<T1, R1, C1>&, const Eigen::Matrix<T2, R2, C2>&, stan::math::{anonymous}::dot_product_vari<T1, T2>*, stan::math::{anonymous}::dot_product_vari<T1, T2>*) [with int R1 = -1; int C1 = 1; int R2 = 1; int C2 = -1; T1 = stan::math::var; T2 = double]’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/dot_product.hpp:206:50: required from ‘typename boost::enable_if_c<(boost::is_same<T1, stan::math::var>::value || boost::is_same<T2, stan::math::var>::value), stan::math::var>::type stan::math::dot_product(const Eigen::Matrix<T, R, C>&, const Eigen::Matrix<T2, R2, C2>&) [with T1 = stan::math::var; int R1 = -1; int C1 = 1; T2 = double; int R2 = 1; int C2 = -1; typename boost::enable_if_c<(boost::is_same<T1, stan::math::var>::value || boost::is_same<T2, stan::math::var>::value), stan::math::var>::type = stan::math::var]’
stan_files/mmlm_code.hpp:908:55: required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:45:39: required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_mmlm_code_namespace::model_mmlm_code; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1168:49: required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014u, 0u, 2147483563u>, boost::random::linear_congruential_engine<unsigned int, 40692u, 0u, 2147483399u> >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:21:88: required from here
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/dot_product.hpp:176:17: error: call to ‘void stan::math::{anonymous}::dot_product_vari<T1, T2>::initialize(stan::math::vari**&, const Eigen::DenseBase<OtherDerived>&, stan::math::vari**) [with Derived = Eigen::Matrix<stan::math::var, -1, 1>; T1 = stan::math::var; T2 = double]’ uses the default argument for parameter 3, which is not yet defined
initialize(v1_, v1);
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/dot_product.hpp:181:17: error: call to ‘void stan::math::{anonymous}::dot_product_vari<T1, T2>::initialize(double*&, const Eigen::DenseBase<OtherDerived>&, double*) [with Derived = Eigen::Matrix<double, 1, -1>; T1 = stan::math::var; T2 = double]’ uses the default argument for parameter 3, which is not yet defined
initialize(v2_, v2);
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/dot_product.hpp: In instantiation of ‘stan::math::{anonymous}::dot_product_vari<T1, T2>::dot_product_vari(const Eigen::Matrix<T1, R1, C1>&, const Eigen::Matrix<T2, R2, C2>&, stan::math::{anonymous}::dot_product_vari<T1, T2>*, stan::math::{anonymous}::dot_product_vari<T1, T2>*) [with int R1 = 1; int C1 = -1; int R2 = 1; int C2 = -1; T1 = stan::math::var; T2 = double]’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/dot_product.hpp:206:50: required from ‘typename boost::enable_if_c<(boost::is_same<T1, stan::math::var>::value || boost::is_same<T2, stan::math::var>::value), stan::math::var>::type stan::math::dot_product(const Eigen::Matrix<T, R, C>&, const Eigen::Matrix<T2, R2, C2>&) [with T1 = stan::math::var; int R1 = 1; int C1 = -1; T2 = double; int R2 = 1; int C2 = -1; typename boost::enable_if_c<(boost::is_same<T1, stan::math::var>::value || boost::is_same<T2, stan::math::var>::value), stan::math::var>::type = stan::math::var]’
stan_files/mmlm_code.hpp:940:41: required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:45:39: required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_mmlm_code_namespace::model_mmlm_code; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1168:49: required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014u, 0u, 2147483563u>, boost::random::linear_congruential_engine<unsigned int, 40692u, 0u, 2147483399u> >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:21:88: required from here
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/dot_product.hpp:176:17: error: call to ‘void stan::math::{anonymous}::dot_product_vari<T1, T2>::initialize(stan::math::vari**&, const Eigen::DenseBase<OtherDerived>&, stan::math::vari**) [with Derived = Eigen::Matrix<stan::math::var, 1, -1>; T1 = stan::math::var; T2 = double]’ uses the default argument for parameter 3, which is not yet defined
initialize(v1_, v1);
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat/fun/dot_product.hpp:181:17: error: call to ‘void stan::math::{anonymous}::dot_product_vari<T1, T2>::initialize(double*&, const Eigen::DenseBase<OtherDerived>&, double*) [with Derived = Eigen::Matrix<double, 1, -1>; T1 = stan::math::var; T2 = double]’ uses the default argument for parameter 3, which is not yet defined
initialize(v2_, v2);
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/normal_log.hpp:5:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal.hpp:340,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:49,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/normal_lpdf.hpp: In instantiation of ‘typename stan::return_type<T_x, T_beta, T_alpha>::type stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix<stan::math::var, 1, -1>; T_loc = int; T_scale = int; typename stan::return_type<T_x, T_beta, T_alpha>::type = stan::math::var]’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/normal_log.hpp:34:50: required from ‘typename stan::return_type<T_x, T_beta, T_alpha>::type stan::math::normal_log(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix<stan::math::var, 1, -1>; T_loc = int; T_scale = int; typename stan::return_type<T_x, T_beta, T_alpha>::type = stan::math::var]’
stan_files/mmlm_code.hpp:1066:52: required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:45:39: required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_mmlm_code_namespace::model_mmlm_code; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1168:49: required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014u, 0u, 2147483563u>, boost::random::linear_congruential_engine<unsigned int, 40692u, 0u, 2147483399u> >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:21:88: required from here
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/normal_lpdf.hpp:55:16: error: no matching function for call to ‘size_zero(const Eigen::Matrix<stan::math::var, 1, -1>&, const int&, const int&)’
if (size_zero(y, mu, sigma))
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/bernoulli_logit_glm_lpmf.hpp:15:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:267,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/size_zero.hpp:18:13: note: candidate: template<class T> bool stan::math::size_zero(T&)
inline bool size_zero(T& x) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/size_zero.hpp:18:13: note: template argument deduction/substitution failed:
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/normal_log.hpp:5:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal.hpp:340,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:49,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/normal_lpdf.hpp:55:16: note: candidate expects 1 argument, 3 provided
if (size_zero(y, mu, sigma))
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/bernoulli_logit_glm_lpmf.hpp:15:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:267,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/size_zero.hpp:31:13: note: candidate: template<class T, class ... Ts> bool stan::math::size_zero(T&, <type error>)
inline bool size_zero(T& x, Ts&&... xs) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/size_zero.hpp:31:13: note: template argument deduction/substitution failed:
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/gamma_log.hpp:5:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal.hpp:270,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:49,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/gamma_lpdf.hpp: In instantiation of ‘typename stan::return_type<T_x, T_beta, T_alpha>::type stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = true; T_y = Eigen::Matrix<stan::math::var, 1, -1>; T_shape = int; T_inv_scale = int; typename stan::return_type<T_x, T_beta, T_alpha>::type = stan::math::var]’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/gamma_log.hpp:38:55: required from ‘typename stan::return_type<T_x, T_beta, T_alpha>::type stan::math::gamma_log(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = true; T_y = Eigen::Matrix<stan::math::var, 1, -1>; T_shape = int; T_inv_scale = int; typename stan::return_type<T_x, T_beta, T_alpha>::type = stan::math::var]’
stan_files/mmlm_code.hpp:1071:47: required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:45:39: required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_mmlm_code_namespace::model_mmlm_code; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1168:49: required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014u, 0u, 2147483563u>, boost::random::linear_congruential_engine<unsigned int, 40692u, 0u, 2147483399u> >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:21:88: required from here
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/gamma_lpdf.hpp:61:16: error: no matching function for call to ‘size_zero(const Eigen::Matrix<stan::math::var, 1, -1>&, const int&, const int&)’
if (size_zero(y, alpha, beta))
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/bernoulli_logit_glm_lpmf.hpp:15:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:267,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/size_zero.hpp:18:13: note: candidate: template<class T> bool stan::math::size_zero(T&)
inline bool size_zero(T& x) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/size_zero.hpp:18:13: note: template argument deduction/substitution failed:
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/gamma_log.hpp:5:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal.hpp:270,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:49,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/gamma_lpdf.hpp:61:16: note: candidate expects 1 argument, 3 provided
if (size_zero(y, alpha, beta))
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/bernoulli_logit_glm_lpmf.hpp:15:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:267,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/size_zero.hpp:31:13: note: candidate: template<class T, class ... Ts> bool stan::math::size_zero(T&, <type error>)
inline bool size_zero(T& x, Ts&&... xs) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/size_zero.hpp:31:13: note: template argument deduction/substitution failed:
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/gamma_log.hpp:5:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal.hpp:270,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:49,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/gamma_lpdf.hpp: In instantiation of ‘typename stan::return_type<T_x, T_beta, T_alpha>::type stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = true; T_y = stan::math::var; T_shape = int; T_inv_scale = int; typename stan::return_type<T_x, T_beta, T_alpha>::type = stan::math::var]’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/gamma_log.hpp:38:55: required from ‘typename stan::return_type<T_x, T_beta, T_alpha>::type stan::math::gamma_log(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = true; T_y = stan::math::var; T_shape = int; T_inv_scale = int; typename stan::return_type<T_x, T_beta, T_alpha>::type = stan::math::var]’
stan_files/mmlm_code.hpp:1082:47: required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:45:39: required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_mmlm_code_namespace::model_mmlm_code; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1168:49: required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014u, 0u, 2147483563u>, boost::random::linear_congruential_engine<unsigned int, 40692u, 0u, 2147483399u> >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:21:88: required from here
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/gamma_lpdf.hpp:61:16: error: no matching function for call to ‘size_zero(const stan::math::var&, const int&, const int&)’
if (size_zero(y, alpha, beta))
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/bernoulli_logit_glm_lpmf.hpp:15:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:267,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/size_zero.hpp:18:13: note: candidate: template<class T> bool stan::math::size_zero(T&)
inline bool size_zero(T& x) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/size_zero.hpp:18:13: note: template argument deduction/substitution failed:
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/gamma_log.hpp:5:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal.hpp:270,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:49,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/gamma_lpdf.hpp:61:16: note: candidate expects 1 argument, 3 provided
if (size_zero(y, alpha, beta))
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/bernoulli_logit_glm_lpmf.hpp:15:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:267,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/size_zero.hpp:31:13: note: candidate: template<class T, class ... Ts> bool stan::math::size_zero(T&, <type error>)
inline bool size_zero(T& x, Ts&&... xs) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/size_zero.hpp:31:13: note: template argument deduction/substitution failed:
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/normal_log.hpp:5:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal.hpp:340,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:49,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/normal_lpdf.hpp: In instantiation of ‘typename stan::return_type<T_x, T_beta, T_alpha>::type stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = std::vector<double>; T_loc = std::vector<stan::math::var>; T_scale = stan::math::var; typename stan::return_type<T_x, T_beta, T_alpha>::type = stan::math::var]’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/normal_log.hpp:34:50: required from ‘typename stan::return_type<T_x, T_beta, T_alpha>::type stan::math::normal_log(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = std::vector<double>; T_loc = std::vector<stan::math::var>; T_scale = stan::math::var; typename stan::return_type<T_x, T_beta, T_alpha>::type = stan::math::var]’
stan_files/mmlm_code.hpp:1084:48: required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:45:39: required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_mmlm_code_namespace::model_mmlm_code; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1168:49: required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014u, 0u, 2147483563u>, boost::random::linear_congruential_engine<unsigned int, 40692u, 0u, 2147483399u> >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:21:88: required from here
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/normal_lpdf.hpp:55:16: error: no matching function for call to ‘size_zero(const std::vector<double>&, const std::vector<stan::math::var>&, const stan::math::var&)’
if (size_zero(y, mu, sigma))
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/bernoulli_logit_glm_lpmf.hpp:15:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:267,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/size_zero.hpp:18:13: note: candidate: template<class T> bool stan::math::size_zero(T&)
inline bool size_zero(T& x) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/size_zero.hpp:18:13: note: template argument deduction/substitution failed:
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/normal_log.hpp:5:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal.hpp:340,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:49,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/normal_lpdf.hpp:55:16: note: candidate expects 1 argument, 3 provided
if (size_zero(y, mu, sigma))
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/bernoulli_logit_glm_lpmf.hpp:15:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:267,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/size_zero.hpp:31:13: note: candidate: template<class T, class ... Ts> bool stan::math::size_zero(T&, <type error>)
inline bool size_zero(T& x, Ts&&... xs) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/size_zero.hpp:31:13: note: template argument deduction/substitution failed:
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/normal_log.hpp:5:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal.hpp:340,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:49,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/normal_lpdf.hpp: In instantiation of ‘typename stan::return_type<T_x, T_beta, T_alpha>::type stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix<stan::math::var, -1, 1>; T_loc = int; T_scale = int; typename stan::return_type<T_x, T_beta, T_alpha>::type = stan::math::var]’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/normal_log.hpp:34:50: required from ‘typename stan::return_type<T_x, T_beta, T_alpha>::type stan::math::normal_log(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = Eigen::Matrix<stan::math::var, -1, 1>; T_loc = int; T_scale = int; typename stan::return_type<T_x, T_beta, T_alpha>::type = stan::math::var]’
stan_files/mmlm_code.hpp:1086:48: required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:45:39: required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_mmlm_code_namespace::model_mmlm_code; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1168:49: required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014u, 0u, 2147483563u>, boost::random::linear_congruential_engine<unsigned int, 40692u, 0u, 2147483399u> >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:21:88: required from here
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/normal_lpdf.hpp:55:16: error: no matching function for call to ‘size_zero(const Eigen::Matrix<stan::math::var, -1, 1>&, const int&, const int&)’
if (size_zero(y, mu, sigma))
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/bernoulli_logit_glm_lpmf.hpp:15:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:267,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/size_zero.hpp:18:13: note: candidate: template<class T> bool stan::math::size_zero(T&)
inline bool size_zero(T& x) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/size_zero.hpp:18:13: note: template argument deduction/substitution failed:
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/normal_log.hpp:5:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal.hpp:340,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:49,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/normal_lpdf.hpp:55:16: note: candidate expects 1 argument, 3 provided
if (size_zero(y, mu, sigma))
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/bernoulli_logit_glm_lpmf.hpp:15:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:267,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/size_zero.hpp:31:13: note: candidate: template<class T, class ... Ts> bool stan::math::size_zero(T&, <type error>)
inline bool size_zero(T& x, Ts&&... xs) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/size_zero.hpp:31:13: note: template argument deduction/substitution failed:
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/gamma_log.hpp:5:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal.hpp:270,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:49,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/gamma_lpdf.hpp: In instantiation of ‘typename stan::return_type<T_x, T_beta, T_alpha>::type stan::math::gamma_lpdf(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = true; T_y = Eigen::Matrix<stan::math::var, -1, 1>; T_shape = int; T_inv_scale = int; typename stan::return_type<T_x, T_beta, T_alpha>::type = stan::math::var]’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/gamma_log.hpp:38:55: required from ‘typename stan::return_type<T_x, T_beta, T_alpha>::type stan::math::gamma_log(const T_y&, const T_shape&, const T_inv_scale&) [with bool propto = true; T_y = Eigen::Matrix<stan::math::var, -1, 1>; T_shape = int; T_inv_scale = int; typename stan::return_type<T_x, T_beta, T_alpha>::type = stan::math::var]’
stan_files/mmlm_code.hpp:1090:47: required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:45:39: required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_mmlm_code_namespace::model_mmlm_code; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1168:49: required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014u, 0u, 2147483563u>, boost::random::linear_congruential_engine<unsigned int, 40692u, 0u, 2147483399u> >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:21:88: required from here
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/gamma_lpdf.hpp:61:16: error: no matching function for call to ‘size_zero(const Eigen::Matrix<stan::math::var, -1, 1>&, const int&, const int&)’
if (size_zero(y, alpha, beta))
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/bernoulli_logit_glm_lpmf.hpp:15:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:267,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/size_zero.hpp:18:13: note: candidate: template<class T> bool stan::math::size_zero(T&)
inline bool size_zero(T& x) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/size_zero.hpp:18:13: note: template argument deduction/substitution failed:
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/gamma_log.hpp:5:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal.hpp:270,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:49,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/gamma_lpdf.hpp:61:16: note: candidate expects 1 argument, 3 provided
if (size_zero(y, alpha, beta))
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/bernoulli_logit_glm_lpmf.hpp:15:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:267,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/size_zero.hpp:31:13: note: candidate: template<class T, class ... Ts> bool stan::math::size_zero(T&, <type error>)
inline bool size_zero(T& x, Ts&&... xs) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/size_zero.hpp:31:13: note: template argument deduction/substitution failed:
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/normal_log.hpp:5:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal.hpp:340,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:49,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/normal_lpdf.hpp: In instantiation of ‘typename stan::return_type<T_x, T_beta, T_alpha>::type stan::math::normal_lpdf(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = stan::math::var; T_loc = int; T_scale = int; typename stan::return_type<T_x, T_beta, T_alpha>::type = stan::math::var]’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/normal_log.hpp:34:50: required from ‘typename stan::return_type<T_x, T_beta, T_alpha>::type stan::math::normal_log(const T_y&, const T_loc&, const T_scale&) [with bool propto = true; T_y = stan::math::var; T_loc = int; T_scale = int; typename stan::return_type<T_x, T_beta, T_alpha>::type = stan::math::var]’
stan_files/mmlm_code.hpp:1092:48: required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:45:39: required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_mmlm_code_namespace::model_mmlm_code; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1168:49: required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014u, 0u, 2147483563u>, boost::random::linear_congruential_engine<unsigned int, 40692u, 0u, 2147483399u> >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:21:88: required from here
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/normal_lpdf.hpp:55:16: error: no matching function for call to ‘size_zero(const stan::math::var&, const int&, const int&)’
if (size_zero(y, mu, sigma))
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/bernoulli_logit_glm_lpmf.hpp:15:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:267,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/size_zero.hpp:18:13: note: candidate: template<class T> bool stan::math::size_zero(T&)
inline bool size_zero(T& x) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/size_zero.hpp:18:13: note: template argument deduction/substitution failed:
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/normal_log.hpp:5:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal.hpp:340,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:49,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/normal_lpdf.hpp:55:16: note: candidate expects 1 argument, 3 provided
if (size_zero(y, mu, sigma))
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/bernoulli_logit_glm_lpmf.hpp:15:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:267,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/size_zero.hpp:31:13: note: candidate: template<class T, class ... Ts> bool stan::math::size_zero(T&, <type error>)
inline bool size_zero(T& x, Ts&&... xs) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/size_zero.hpp:31:13: note: template argument deduction/substitution failed:
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/bernoulli_log.hpp:5:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal.hpp:185,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:49,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/bernoulli_lpmf.hpp: In instantiation of ‘typename stan::return_type<T_prob>::type stan::math::bernoulli_lpmf(const T_n&, const T_prob&) [with bool propto = true; T_n = int; T_prob = stan::math::var; typename stan::return_type<T_prob>::type = stan::math::var]’:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/bernoulli_log.hpp:16:45: required from ‘typename stan::return_type<T_prob>::type stan::math::bernoulli_log(const T_n&, const T_prob&) [with bool propto = true; T_n = int; T_prob = stan::math::var; typename stan::return_type<T_prob>::type = stan::math::var]’
stan_files/mmlm_code.hpp:1096:55: required from ‘T__ model_mmlm_code_namespace::model_mmlm_code::log_prob(std::vector<T_l>&, std::vector<int>&, std::ostream*) const [with bool propto__ = true; bool jacobian__ = true; T__ = stan::math::var; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:45:39: required from ‘double stan::model::log_prob_grad(const M&, std::vector<double>&, std::vector<int>&, std::vector<double>&, std::ostream*) [with bool propto = true; bool jacobian_adjust_transform = true; M = model_mmlm_code_namespace::model_mmlm_code; std::ostream = std::basic_ostream<char>]’
/home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:1168:49: required from ‘SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_mmlm_code_namespace::model_mmlm_code; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014u, 0u, 2147483563u>, boost::random::linear_congruential_engine<unsigned int, 40692u, 0u, 2147483399u> >; SEXP = SEXPREC*]’
stan_files/mmlm_code.cc:21:88: required from here
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/bernoulli_lpmf.hpp:46:16: error: no matching function for call to ‘size_zero(const int&, const stan::math::var&)’
if (size_zero(n, theta))
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/bernoulli_logit_glm_lpmf.hpp:15:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:267,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/size_zero.hpp:18:13: note: candidate: template<class T> bool stan::math::size_zero(T&)
inline bool size_zero(T& x) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/size_zero.hpp:18:13: note: template argument deduction/substitution failed:
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/bernoulli_log.hpp:5:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal.hpp:185,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/arr.hpp:49,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:325,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/prob/bernoulli_lpmf.hpp:46:16: note: candidate expects 1 argument, 2 provided
if (size_zero(n, theta))
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat/prob/bernoulli_logit_glm_lpmf.hpp:15:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/mat.hpp:267,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:12,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/size_zero.hpp:31:13: note: candidate: template<class T, class ... Ts> bool stan::math::size_zero(T&, <type error>)
inline bool size_zero(T& x, Ts&&... xs) {
^
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/size_zero.hpp:31:13: note: template argument deduction/substitution failed:
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/core/operator_unary_plus.hpp:7:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/core.hpp:36,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/constants.hpp: At global scope:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/prim/scal/fun/constants.hpp:63:14: warning: ‘stan::math::NEGATIVE_EPSILON’ defined but not used [-Wunused-variable]
const double NEGATIVE_EPSILON = -std::numeric_limits<double>::epsilon();
^
In file included from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/core.hpp:44:0,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/mat.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/log_prob_grad.hpp:4,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/model/test_gradients.hpp:7,
from /home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/src/stan/services/diagnose/diagnose.hpp:10,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/stan_fit.hpp:34,
from /home/biocbuild/bbs-3.8-bioc/R/library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mmlm_code.hpp:18,
from stan_files/mmlm_code.cc:3:
/home/biocbuild/bbs-3.8-bioc/R/library/StanHeaders/include/stan/math/rev/core/set_zero_all_adjoints.hpp:14:13: warning: ‘void stan::math::set_zero_all_adjoints()’ defined but not used [-Wunused-function]
static void set_zero_all_adjoints() {
^
/home/biocbuild/bbs-3.8-bioc/R/etc/Makeconf:170: recipe for target 'stan_files/mmlm_code.o' failed
make: *** [stan_files/mmlm_code.o] Error 1
rm stan_files/mmlm_code.cc
ERROR: compilation failed for package ‘mlm4omics’
* removing ‘/home/biocbuild/bbs-3.8-bioc/R/library/mlm4omics’