Package: mogsa

Version: 1.16.0

Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:mogsa.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings mogsa_1.16.0.tar.gz

StartedAt: 2019-04-16 01:32:16 -0400 (Tue, 16 Apr 2019)

EndedAt: 2019-04-16 01:35:32 -0400 (Tue, 16 Apr 2019)

EllapsedTime: 195.7 seconds

RetCode: 0

Status:  OK

CheckDir: mogsa.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:mogsa.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings mogsa_1.16.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.8-bioc/meat/mogsa.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘mogsa/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘mogsa’ version ‘1.16.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘mogsa’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
               user system elapsed
prepGraphite 38.364  0.484  38.890
prepSupMoa   38.080  0.160  38.278
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL mogsa
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* installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’
* installing *source* package ‘mogsa’ ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (mogsa)

name	user	system	elapsed
GIS	0.616	0.004	0.620
annotate.gs	0.456	0.000	0.454
bootMbpca	0	0	0
box.gs.feature	0.192	0.004	0.194
combine-methods	0.196	0.008	0.201
decompose.gs.group	0.128	0.008	0.138
decompose.gs.ind	0.148	0.000	0.147
distMoa	0.264	0.004	0.269
getmgsa	0.108	0.000	0.111
matpower	0.000	0.000	0.001
mbpca	2.980	0.020	2.999
mgsa-class	0.192	0.012	0.204
moGap	1.088	0.000	1.088
moa-class	0.076	0.004	0.079
moa	0.120	0.004	0.125
moa.sup-class	0.096	0.000	0.097
moaCoef	0.272	0.000	0.270
moaScore	0.380	0.000	0.381
mogsa-package	0.344	0.000	0.342
mogsa	0.344	0.004	0.350
pairwise.rv	0.016	0.000	0.015
plotGS	0.480	0.000	0.482
prepGraphite	38.364	0.484	38.890
prepMsigDB	0.004	0.000	0.016
prepSupMoa	38.080	0.160	38.278
softK	0.000	0.000	0.001
sup.moa	0.296	0.000	0.298
wsvd	0.000	0.000	0.001