Benjamin Mayne
| Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019) |
| URL: https://git.bioconductor.org/packages/msgbsR |
| Branch: RELEASE_3_8 |
| Last Commit: 411f316 |
| Last Changed Date: 2019-01-04 13:40:29 -0400 (Fri, 04 Jan 2019) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-13 11:27:52 -0400 (Sat, 13 Apr 2019).
| Package 1005/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| msgbsR 1.6.1 Benjamin Mayne
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ WARNINGS ] | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: msgbsR |
| Version: 1.6.1 |
| Command: C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:msgbsR.install-out.txt --library=C:\Users\biocbuild\bbs-3.8-bioc\R\library --no-vignettes --timings msgbsR_1.6.1.tar.gz |
| StartedAt: 2019-04-13 04:00:19 -0400 (Sat, 13 Apr 2019) |
| EndedAt: 2019-04-13 04:08:49 -0400 (Sat, 13 Apr 2019) |
| EllapsedTime: 510.3 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: msgbsR.Rcheck |
| Warnings: 1 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:msgbsR.install-out.txt --library=C:\Users\biocbuild\bbs-3.8-bioc\R\library --no-vignettes --timings msgbsR_1.6.1.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.8-bioc/meat/msgbsR.Rcheck'
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'msgbsR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'msgbsR' version '1.6.1'
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'msgbsR' can be installed ... OK
* checking installed package size ... NOTE
installed size is 15.9Mb
sub-directories of 1Mb or more:
extdata 15.2Mb
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: 'utils'
All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... WARNING
Note: significantly better compression could be obtained
by using R CMD build --resave-data
old_size new_size compress
ratdata.rda 318Kb 125Kb xz
ratdata2.rda 287Kb 116Kb xz
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
rawCounts 5.04 0.03 6.7
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
rawCounts 8.44 0.19 8.63
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 2 NOTEs
See
'C:/Users/biocbuild/bbs-3.8-bioc/meat/msgbsR.Rcheck/00check.log'
for details.
msgbsR.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/msgbsR_1.6.1.tar.gz && rm -rf msgbsR.buildbin-libdir && mkdir msgbsR.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=msgbsR.buildbin-libdir msgbsR_1.6.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL msgbsR_1.6.1.zip && rm msgbsR_1.6.1.tar.gz msgbsR_1.6.1.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 15.3M 100 15.3M 0 0 61.3M 0 --:--:-- --:--:-- --:--:-- 62.3M
install for i386
* installing *source* package 'msgbsR' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
No methods found in package 'IRanges' for request: 'rev' when loading 'easyRNASeq'
** help
*** installing help indices
converting help for package 'msgbsR'
finding HTML links ... done
checkCuts html
cuts html
diffMeth html
msgbsR html
plotCircos html
plotCounts html
ratdata html
ratdata2 html
rawCounts html
** building package indices
** installing vignettes
** testing if installed package can be loaded
No methods found in package 'IRanges' for request: 'rev' when loading 'easyRNASeq'
In R CMD INSTALL
install for x64
* installing *source* package 'msgbsR' ...
** testing if installed package can be loaded
No methods found in package 'IRanges' for request: 'rev' when loading 'easyRNASeq'
* MD5 sums
packaged installation of 'msgbsR' as msgbsR_1.6.1.zip
* DONE (msgbsR)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'msgbsR' successfully unpacked and MD5 sums checked
In R CMD INSTALL
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msgbsR.Rcheck/examples_i386/msgbsR-Ex.timings
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msgbsR.Rcheck/examples_x64/msgbsR-Ex.timings
|