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INSTALL report for ontoCAT on tokay1

This page was generated on 2018-04-30 09:33:11 -0400 (Mon, 30 Apr 2018).

Package 1027/1559HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ontoCAT 1.31.2
Natalja Kurbatova
Snapshot Date: 2018-04-29 16:46:14 -0400 (Sun, 29 Apr 2018)
URL: https://git.bioconductor.org/packages/ontoCAT
Branch: master
Last Commit: 40d064e
Last Changed Date: 2017-11-22 07:56:33 -0400 (Wed, 22 Nov 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  ERROR 
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  ERROR  OK 
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  ERROR  OK 

Summary

Package: ontoCAT
Version: 1.31.2
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/ontoCAT_1.31.2.tar.gz && rm -rf ontoCAT.buildbin-libdir && mkdir ontoCAT.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ontoCAT.buildbin-libdir ontoCAT_1.31.2.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL ontoCAT_1.31.2.zip && rm ontoCAT_1.31.2.tar.gz ontoCAT_1.31.2.zip
StartedAt: 2018-04-29 18:24:18 -0400 (Sun, 29 Apr 2018)
EndedAt: 2018-04-29 18:28:33 -0400 (Sun, 29 Apr 2018)
EllapsedTime: 254.1 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/ontoCAT_1.31.2.tar.gz && rm -rf ontoCAT.buildbin-libdir && mkdir ontoCAT.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ontoCAT.buildbin-libdir ontoCAT_1.31.2.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL ontoCAT_1.31.2.zip && rm ontoCAT_1.31.2.tar.gz ontoCAT_1.31.2.zip
###
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install for i386

* installing *source* package 'ontoCAT' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'ontoCAT'
    finding HTML links ... done
    Ontology-class                          html  
    OntologyTerm-class                      html  
    getAccession                            html  
    getAllTermChildren                      html  
    getAllTermChildrenById                  html  
    getAllTermIds                           html  
    getAllTermParents                       html  
    getAllTermParentsById                   html  
    getAllTerms                             html  
    getEFO                                  html  
    getEFOBranchRootIds                     html  
    getLabel                                html  
    getOntology                             html  
    getOntologyAccession                    html  
    getOntologyDescription                  html  
    getOntologyNoReasoning                  html  
    getOntologyRelationNames                html  
    getRootIds                              html  
    getRoots                                html  
    getTermAndAllChildren                   html  
    getTermAndAllChildrenById               html  
    getTermById                             html  
    getTermChildren                         html  
    getTermChildrenById                     html  
    getTermDefinitions                      html  
    getTermDefinitionsById                  html  
    getTermNameById                         html  
    getTermParents                          html  
    getTermParentsById                      html  
    getTermRelationNames                    html  
    getTermRelationNamesById                html  
    getTermRelations                        html  
    getTermRelationsById                    html  
    getTermSynonyms                         html  
    getTermSynonymsById                     html  
    hasTerm                                 html  
    isEFOBranchRoot                         html  
    isEFOBranchRootById                     html  
    isRoot                                  html  
    isRootById                              html  
    ontoCAT-package                         html  
    searchTerm                              html  
    searchTermPrefix                        html  
    showHierarchyDownToTerm                 html  
    showHierarchyDownToTermById             html  
    showPathsToTerm                         html  
    showPathsToTermById                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
Warning: Package 'ontoCAT' is deprecated and will be removed from Bioconductor
  version 3.8
In R CMD INSTALL

install for x64

* installing *source* package 'ontoCAT' ...
** testing if installed package can be loaded
Warning: Package 'ontoCAT' is deprecated and will be removed from Bioconductor
  version 3.8
* MD5 sums
packaged installation of 'ontoCAT' as ontoCAT_1.31.2.zip
* DONE (ontoCAT)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'ontoCAT' successfully unpacked and MD5 sums checked
In R CMD INSTALL