Back to Multiple platform build/check report for BioC 3.8 |
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This page was generated on 2019-04-13 11:27:17 -0400 (Sat, 13 Apr 2019).
Package 1195/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
proFIA 1.8.1 Alexis Delabriere
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | ![]() | ||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | ![]() |
Package: proFIA |
Version: 1.8.1 |
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/proFIA_1.8.1.tar.gz && rm -rf proFIA.buildbin-libdir && mkdir proFIA.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=proFIA.buildbin-libdir proFIA_1.8.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL proFIA_1.8.1.zip && rm proFIA_1.8.1.tar.gz proFIA_1.8.1.zip |
StartedAt: 2019-04-12 19:57:38 -0400 (Fri, 12 Apr 2019) |
EndedAt: 2019-04-12 19:58:50 -0400 (Fri, 12 Apr 2019) |
EllapsedTime: 71.5 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/proFIA_1.8.1.tar.gz && rm -rf proFIA.buildbin-libdir && mkdir proFIA.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=proFIA.buildbin-libdir proFIA_1.8.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL proFIA_1.8.1.zip && rm proFIA_1.8.1.tar.gz proFIA_1.8.1.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 309k 100 309k 0 0 2034k 0 --:--:-- --:--:-- --:--:-- 2079k install for i386 * installing *source* package 'proFIA' ... ** libs C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c FIABandsExtractionCentroid.c -o FIABandsExtractionCentroid.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c UtilFunc.c -o UtilFunc.o C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c fastMatchPpm.c -o fastMatchPpm.o C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o proFIA.dll tmp.def FIABandsExtractionCentroid.o UtilFunc.o fastMatchPpm.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/proFIA.buildbin-libdir/proFIA/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'proFIA' finding HTML links ... done acquisitionDirectory html analyzeAcquisitionFIA html determiningInjectionZone html determiningSizePeak.Geom html estimateNoiseMS html exportDataMatrix-proFIAset-method html exportExpressionSet-proFIAset-method html exportPeakTable-proFIAset-method html exportSampleMetadata-proFIAset-method html exportVariableMetadata-proFIAset-method html findBandsFIA html findFIASignal html findMzGroup-proFIAset-method html getInjectionPeak html group.FIA-proFIAset-method html impute.FIA-proFIAset-method html impute.KNN_TN-proFIAset-method html impute.randomForest-proFIAset-method html makeDataMatrix-proFIAset-method html noiseEstimation-class html peaksGroup-proFIAset-method html plot html plotFlowgrams-proFIAset-method html plotNoise html plotRaw-proFIAset-method html plotSamplePeaks-proFIAset-method html proFIA-package html proFIAset-class html proFIAset html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'proFIA' ... ** libs C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c FIABandsExtractionCentroid.c -o FIABandsExtractionCentroid.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c UtilFunc.c -o UtilFunc.o C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c fastMatchPpm.c -o fastMatchPpm.o C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o proFIA.dll tmp.def FIABandsExtractionCentroid.o UtilFunc.o fastMatchPpm.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/proFIA.buildbin-libdir/proFIA/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'proFIA' as proFIA_1.8.1.zip * DONE (proFIA) In R CMD INSTALL In R CMD INSTALL * installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library' package 'proFIA' successfully unpacked and MD5 sums checked In R CMD INSTALL