Package: randPack

Version: 1.28.0

Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:randPack.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings randPack_1.28.0.tar.gz

StartedAt: 2019-04-16 02:23:17 -0400 (Tue, 16 Apr 2019)

EndedAt: 2019-04-16 02:23:44 -0400 (Tue, 16 Apr 2019)

EllapsedTime: 27.2 seconds

RetCode: 0

Status:  OK

CheckDir: randPack.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:randPack.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings randPack_1.28.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.8-bioc/meat/randPack.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘randPack/DESCRIPTION’ ... OK
* this is package ‘randPack’ version ‘1.28.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘randPack’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Non-standard license specification:
  Artistic 2.0
Standardizable: TRUE
Standardized license specification:
  Artistic-2.0
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: ‘methods’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.checkRand2CT : <anonymous>: no visible global function definition for
  ‘is’
.newEBC: no visible global function definition for ‘is’
.newPBlock: no visible global function definition for ‘is’
.newUrn: no visible global function definition for ‘is’
addPData: no visible global function definition for ‘is’
createTrial: no visible global function definition for ‘new’
getCovariates : <anonymous> : <anonymous>: no visible binding for
  global variable ‘slot’
getEnrolleeInfo: no visible global function definition for ‘is’
getTreatment: no visible global function definition for ‘is’
makeRandomizer: no visible global function definition for ‘is’
makeRandomizer: no visible global function definition for ‘new’
trtAlloc: no visible global function definition for ‘is’
validPID: no visible global function definition for ‘is’
show,ClinicalTrial: no visible global function definition for ‘show’
Undefined global functions or variables:
  is new show slot
Consider adding
  importFrom("methods", "is", "new", "show", "slot")
to your NAMESPACE file (and ensure that your DESCRIPTION Imports field
contains 'methods').
* checking Rd files ... NOTE
prepare_Rd: getTreatment.Rd:20-21: Dropping empty section \details
prepare_Rd: getTreatment.Rd:22-23: Dropping empty section \value
prepare_Rd: makeRandomizer.Rd:40-41: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 4 NOTEs
See
  ‘/home/biocbuild/bbs-3.8-bioc/meat/randPack.Rcheck/00check.log’
for details.

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### Running command:
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###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL randPack
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* installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’
* installing *source* package ‘randPack’ ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (randPack)

name	user	system	elapsed
CT1	0.016	0.004	0.017
ClinicalExperiment-class	0.004	0.000	0.003
ClinicalTrial-class	0.000	0.004	0.002
PatientData-class	0.000	0.000	0.001
PatientID-class	0.004	0.000	0.002
Randomizer-class	0	0	0
SampleData	0.008	0.000	0.006
createTrial	0.000	0.000	0.002
getEnrolleeInfo	0.000	0.000	0.002
getTreatment	0.004	0.000	0.004
minimizePocSim	0.004	0.000	0.002
simPats	0.004	0.000	0.003
treatmentNames	0.000	0.000	0.001