Michael Cole
| Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019) |
| URL: https://git.bioconductor.org/packages/scone |
| Branch: RELEASE_3_8 |
| Last Commit: ad564e5 |
| Last Changed Date: 2019-01-04 13:48:56 -0400 (Fri, 04 Jan 2019) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-13 11:27:24 -0400 (Sat, 13 Apr 2019).
| Package 1401/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| scone 1.6.1 Michael Cole
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | NA | |||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: scone |
| Version: 1.6.1 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/scone_1.6.1.tar.gz && rm -rf scone.buildbin-libdir && mkdir scone.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=scone.buildbin-libdir scone_1.6.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL scone_1.6.1.zip && rm scone_1.6.1.tar.gz scone_1.6.1.zip |
| StartedAt: 2019-04-12 20:29:41 -0400 (Fri, 12 Apr 2019) |
| EndedAt: 2019-04-12 20:30:39 -0400 (Fri, 12 Apr 2019) |
| EllapsedTime: 57.8 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/scone_1.6.1.tar.gz && rm -rf scone.buildbin-libdir && mkdir scone.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=scone.buildbin-libdir scone_1.6.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL scone_1.6.1.zip && rm scone_1.6.1.tar.gz scone_1.6.1.zip
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install for i386
* installing *source* package 'scone' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'scone'
finding HTML links ... done
CLR_FN html
DESEQ_FN html
FQ_FN html
SCRAN_FN html
SUM_FN html
SconeExperiment-class html
finding level-2 HTML links ... done
TMM_FN html
UQ_FN html
biplot_color html
biplot_interactive html
control_genes html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpsFkahj/R.INSTALL1f4c7aed7768/scone/man/control_genes.Rd:28: file link 'toupper' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpsFkahj/R.INSTALL1f4c7aed7768/scone/man/control_genes.Rd:29: file link 'tolower' in package 'base' does not exist and so has been treated as a topic
estimate_ziber html
factor_sample_filter html
fast_estimate_ziber html
get_bio html
get_design html
get_negconruv html
get_normalized html
get_params html
get_qc html
get_scores html
impute_expectation html
impute_null html
lm_adjust html
make_design html
metric_sample_filter html
scone html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpsFkahj/R.INSTALL1f4c7aed7768/scone/man/scone.Rd:101: file link 'bpparam' in package 'BiocParallel' does not exist and so has been treated as a topic
sconeReport html
scone_easybake html
score_matrix html
select_methods html
simple_FNR_params html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'scone' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'scone' as scone_1.6.1.zip
* DONE (scone)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'scone' successfully unpacked and MD5 sums checked
In R CMD INSTALL