Package: supraHex

Version: 1.20.0

Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:supraHex.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings supraHex_1.20.0.tar.gz

StartedAt: 2019-04-16 03:19:23 -0400 (Tue, 16 Apr 2019)

EndedAt: 2019-04-16 03:20:09 -0400 (Tue, 16 Apr 2019)

EllapsedTime: 45.5 seconds

RetCode: 0

Status:  OK

CheckDir: supraHex.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:supraHex.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings supraHex_1.20.0.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.8-bioc/meat/supraHex.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘supraHex/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘supraHex’ version ‘1.20.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘supraHex’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL supraHex
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* installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’
* installing *source* package ‘supraHex’ ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (supraHex)

name	user	system	elapsed
sBMH	0.160	0.004	0.165
sCompReorder	0.564	0.028	0.597
sDistance	0.104	0.000	0.104
sDmat	0.136	0.004	0.138
sDmatCluster	0.208	0.004	0.214
sDmatMinima	0.136	0.004	0.139
sHexDist	0.004	0.000	0.003
sHexGrid	0.004	0.000	0.003
sHexGridVariant	0.000	0.000	0.002
sHexPolygon	0.000	0.000	0.002
sInitial	0.004	0.000	0.003
sMapOverlay	0.220	0.004	0.224
sNeighAny	0.004	0.000	0.007
sNeighDirect	0.004	0.000	0.004
sPipeline	1.688	0.004	1.694
sTopology	0.012	0.000	0.014
sTrainBatch	0.036	0.000	0.036
sTrainSeq	0.316	0.000	0.314
sTrainology	0.004	0.000	0.003
sWriteData	0.204	0.000	0.204
visColoralpha	0.008	0.004	0.010
visColorbar	0.052	0.000	0.054
visColormap	0.012	0.000	0.009
visCompReorder	0.672	0.000	0.672
visDmatCluster	0.252	0.000	0.253
visDmatHeatmap	0.220	0.008	0.232
visHeatmap	0.108	0.000	0.110
visHeatmapAdv	0.492	0.008	0.503
visHexAnimate	0.004	0.000	0.001
visHexBarplot	0.300	0.008	0.313
visHexComp	0.124	0.000	0.125
visHexGrid	0.128	0.000	0.128
visHexMapping	0.908	0.004	0.914
visHexMulComp	0.980	0.000	1.016
visHexPattern	1.860	0.024	1.945
visKernels	0.012	0.000	0.013
visTreeBSclust	0.108	0.000	0.106
visTreeBootstrap	0.224	0.008	0.237
visVp	0.028	0.004	0.032