Package: trigger

Version: 1.28.0

Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/trigger_1.28.0.tar.gz && rm -rf trigger.buildbin-libdir && mkdir trigger.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=trigger.buildbin-libdir trigger_1.28.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL trigger_1.28.0.zip && rm trigger_1.28.0.tar.gz trigger_1.28.0.zip

StartedAt: 2019-04-12 19:08:04 -0400 (Fri, 12 Apr 2019)

EndedAt: 2019-04-12 19:08:58 -0400 (Fri, 12 Apr 2019)

EllapsedTime: 53.6 seconds

RetCode: 0

Status:  OK

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### Running command:
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###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/trigger_1.28.0.tar.gz && rm -rf trigger.buildbin-libdir && mkdir trigger.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=trigger.buildbin-libdir trigger_1.28.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL trigger_1.28.0.zip && rm trigger_1.28.0.tar.gz trigger_1.28.0.zip
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install for i386

* installing *source* package 'trigger' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c trigger.c -o trigger.o
trigger.c: In function 'mergeorder':
trigger.c:25:20: warning: variable 'n3' set but not used [-Wunused-but-set-variable]
 int i1,i2,i3,n1,n2,n3;
                    ^
trigger.c: In function 'sec_link_stat':
trigger.c:81:10: warning: variable 'nct' set but not used [-Wunused-but-set-variable]
 int ntr, nct, i, j;
          ^
trigger.c: In function 'sec_link_stat_x':
trigger.c:153:10: warning: variable 'nct' set but not used [-Wunused-but-set-variable]
 int ntr, nct, i, j, k, nk;
          ^
trigger.c: In function 'condi_indep_stat':
trigger.c:233:10: warning: variable 'nct' set but not used [-Wunused-but-set-variable]
 int ntr, nct, i, j;
          ^
trigger.c: In function 'condi_indep_stat_x':
trigger.c:310:10: warning: variable 'nct' set but not used [-Wunused-but-set-variable]
 int ntr, nct, i, j, k, nk;
          ^
trigger.c: In function 'condi_indep_stat_rx':
trigger.c:393:10: warning: variable 'nct' set but not used [-Wunused-but-set-variable]
 int ntr, nct, i, j, k, nk;
          ^
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o trigger.dll tmp.def trigger.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/trigger.buildbin-libdir/trigger/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'trigger'
    finding HTML links ... done
    plot                                    html  
    trigger-build                           html  
    trigger-class                           html  
    trigger-eigenR2                         html  
    trigger-export2cross                    html  
    trigger-link                            html  
    trigger-loclink                         html  
    trigger-mlink                           html  
    trigger-net                             html  
    trigger-netPlot2ps                      html  
    trigger-trait                           html  
    yeast                                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'trigger' ...
** libs
C:/Rtools/mingw_64/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mtune=generic -c trigger.c -o trigger.o
trigger.c: In function 'mergeorder':
trigger.c:25:20: warning: variable 'n3' set but not used [-Wunused-but-set-variable]
 int i1,i2,i3,n1,n2,n3;
                    ^
trigger.c: In function 'sec_link_stat':
trigger.c:81:10: warning: variable 'nct' set but not used [-Wunused-but-set-variable]
 int ntr, nct, i, j;
          ^
trigger.c: In function 'sec_link_stat_x':
trigger.c:153:10: warning: variable 'nct' set but not used [-Wunused-but-set-variable]
 int ntr, nct, i, j, k, nk;
          ^
trigger.c: In function 'condi_indep_stat':
trigger.c:233:10: warning: variable 'nct' set but not used [-Wunused-but-set-variable]
 int ntr, nct, i, j;
          ^
trigger.c: In function 'condi_indep_stat_x':
trigger.c:310:10: warning: variable 'nct' set but not used [-Wunused-but-set-variable]
 int ntr, nct, i, j, k, nk;
          ^
trigger.c: In function 'condi_indep_stat_rx':
trigger.c:393:10: warning: variable 'nct' set but not used [-Wunused-but-set-variable]
 int ntr, nct, i, j, k, nk;
          ^
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o trigger.dll tmp.def trigger.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/trigger.buildbin-libdir/trigger/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'trigger' as trigger_1.28.0.zip
* DONE (trigger)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'trigger' successfully unpacked and MD5 sums checked
In R CMD INSTALL