Package: widgetTools

Version: 1.60.0

Command: C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:widgetTools.install-out.txt --library=C:\Users\biocbuild\bbs-3.8-bioc\R\library --no-vignettes --timings widgetTools_1.60.0.tar.gz

StartedAt: 2019-04-13 06:12:30 -0400 (Sat, 13 Apr 2019)

EndedAt: 2019-04-13 06:14:12 -0400 (Sat, 13 Apr 2019)

EllapsedTime: 101.6 seconds

RetCode: 0

Status:  OK

CheckDir: widgetTools.Rcheck

Warnings: 0

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###
### Running command:
###
###   C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:widgetTools.install-out.txt --library=C:\Users\biocbuild\bbs-3.8-bioc\R\library --no-vignettes --timings widgetTools_1.60.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.8-bioc/meat/widgetTools.Rcheck'
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'widgetTools/DESCRIPTION' ... OK
* this is package 'widgetTools' version '1.60.0'
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
  cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
 OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'widgetTools' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' call to 'methods' which was already attached by Depends.
  Please remove these calls from your code.
'library' or 'require' call to 'Biobase' in package code.
  Please use :: or requireNamespace() instead.
  See section 'Suggested packages' in the 'Writing R Extensions' manual.
Package in Depends field not imported from: 'tcltk'
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
File 'widgetTools/R/zzz.R':
  .onLoad has wrong argument list 'libname, pkgname, where'
  .onLoad calls:
    require("methods", quietly = TRUE)
  .onAttach calls:
    require("Biobase")

Package startup functions should have two arguments with names starting
  with 'lib' and 'pkg', respectively.
Package startup functions should not change the search path.
See section 'Good practice' in '?.onAttach'.

.getChanges: warning in get(wName(pWidgets[[i]]), env =
  wEnv(pWidgets[[i]])): partial argument match of 'env' to 'envir'
.putPW2Env : putOne: warning in assign(wName(pWidget), pWidget, env =
  wEnv(pWidget)): partial argument match of 'env' to 'envir'
updateCheck,widget: warning in get(PWName, env = wEnv(object)): partial
  argument match of 'env' to 'envir'
updateCheck,widget: warning in assign(wName(tempPW), tempPW, env =
  wEnv(tempPW)): partial argument match of 'env' to 'envir'
updateList,widget: warning in get(PWName, env = wEnv(object)): partial
  argument match of 'env' to 'envir'
updateList,widget: warning in assign(wName(tempPW), tempPW, env =
  wEnv(tempPW)): partial argument match of 'env' to 'envir'
updateRadio,widget: warning in get(PWName, env = wEnv(object)): partial
  argument match of 'env' to 'envir'
updateRadio,widget: warning in assign(wName(tempPW), tempPW, env =
  wEnv(tempPW)): partial argument match of 'env' to 'envir'
updateText,widget: warning in get(PWName, env = wEnv(object)): partial
  argument match of 'env' to 'envir'
updateText,widget: warning in assign(wName(tempPW), tempPW, env =
  wEnv(tempPW)): partial argument match of 'env' to 'envir'
.doList: no visible global function definition for 'tklistbox'
.doText: no visible global function definition for 'tktext'
.doText: no visible global function definition for 'tkinsert'
.doWidgets : doOne: no visible global function definition for 'tkframe'
.doWidgets : doOne: no visible global function definition for 'tclVar'
.doWidgets : doOne: no visible global function definition for
  'tkconfigure'
.doWidgets : doOne: no visible global function definition for 'tkpack'
.doWidgets : doOne : <anonymous>: no visible global function definition
  for 'tkfocus'
.doWidgets : doOne: no visible global function definition for 'tkbind'
.doWidgets : doRow: no visible global function definition for 'tkframe'
.doWidgets : doRow: no visible global function definition for 'tkpack'
.getViewer: no visible global function definition for 'tkcanvas'
.getViewer: no visible global function definition for 'tkconfigure'
.onAttach: no visible global function definition for 'addVigs2WinMenu'
.renderButton: no visible global function definition for 'tkbutton'
.renderButton : <anonymous>: no visible global function definition for
  'tkfocus'
.renderButton: no visible global function definition for 'tkconfigure'
.renderCheck: no visible global function definition for 'tkcheckbutton'
.renderCheck: no visible global function definition for 'tkselect'
.renderEntry: no visible global function definition for 'tkentry'
.renderLabel: no visible global function definition for 'tklabel'
.renderRadio: no visible global function definition for 'tkradiobutton'
.renderViewer: no visible global function definition for 'tkframe'
.renderViewer: no visible global function definition for 'tkconfigure'
.renderViewer: no visible global function definition for 'tkpack'
.renew : renewOne: no visible global function definition for 'tkselect'
.renew : renewOne: no visible global function definition for
  'tkdeselect'
dropdownList : upDateEntry: no visible global function definition for
  'tkconfigure'
dropdownList: no visible global function definition for 'tkmessageBox'
dropdownList: no visible global function definition for 'tclvalue<-'
dropdownList: no visible global function definition for 'tkframe'
dropdownList: no visible global function definition for 'tkentry'
dropdownList: no visible global function definition for 'tkconfigure'
dropdownList: no visible global function definition for 'tkpack'
dropdownList: no visible global function definition for 'tkbutton'
getEntryValue: no visible global function definition for 'tclvalue'
getEntryValue: no visible global function definition for 'tkget'
getListOption : end: no visible global function definition for 'tclObj'
getListOption : end: no visible global function definition for
  'tkcurselection'
getListOption : end: no visible global function definition for
  'tkgrab.release'
getListOption : end: no visible global function definition for
  'tkdestroy'
getListOption: no visible global function definition for 'tclVar'
getListOption: no visible global function definition for 'tclObj<-'
getListOption: no visible global function definition for 'tkwinfo'
getListOption: no visible global function definition for
  'tkwm.overrideredirect'
getListOption: no visible global function definition for 'tktoplevel'
getListOption: no visible global function definition for 'tkdestroy'
getListOption: no visible global function definition for
  'tkwm.geometry'
getListOption: no visible global function definition for 'tklistbox'
getListOption: no visible global function definition for 'tkscrollbar'
getListOption : <anonymous>: no visible global function definition for
  'tkyview'
getListOption: no visible global function definition for 'tkconfigure'
getListOption : <anonymous>: no visible global function definition for
  'tkset'
getListOption: no visible global function definition for 'tkpack'
getListOption: no visible global function definition for 'tkbind'
getListOption: no visible global function definition for 'tkgrab.set'
getListOption: no visible global function definition for
  'tkwait.window'
getListValue: no visible global function definition for
  'tkcurselection'
getListValue: no visible global function definition for 'tkget'
getTextValue: no visible global function definition for 'tclvalue'
getTextValue: no visible global function definition for 'tkget'
makeViewer: no visible global function definition for 'tkscrollbar'
makeViewer : <anonymous>: no visible global function definition for
  'tkyview'
makeViewer: no visible global function definition for 'tkconfigure'
makeViewer : <anonymous>: no visible global function definition for
  'tkset'
makeViewer: no visible global function definition for 'tkpack'
makeViewer : <anonymous>: no visible global function definition for
  'tkxview'
oneVScrList: no visible global function definition for 'tkframe'
oneVScrList: no visible global function definition for 'tkpack'
oneVScrList: no visible global function definition for 'tkbutton'
oneVScrList: no visible global function definition for 'tklistbox'
oneVScrList : bindYView: no visible global function definition for
  'tkyview'
oneVScrList: no visible global function definition for 'tkscrollbar'
oneVScrList: no visible global function definition for 'tkconfigure'
oneVScrList : <anonymous>: no visible global function definition for
  'tkset'
tooltip : end: no visible global function definition for 'tkdestroy'
tooltip: no visible global function definition for 'tkwinfo'
tooltip: no visible global function definition for
  'tkwm.overrideredirect'
tooltip: no visible global function definition for 'tktoplevel'
tooltip: no visible global function definition for 'tkdestroy'
tooltip: no visible global function definition for 'tkwm.geometry'
tooltip: no visible global function definition for 'tklabel'
tooltip: no visible global function definition for 'tkpack'
tooltip: no visible global function definition for 'tkbind'
tooltip: no visible global function definition for 'tkwait.window'
widget: no visible global function definition for 'tkgrab.set'
widget : cancelBut: no visible global function definition for
  'tkgrab.release'
widget: no visible global function definition for 'tcl'
widgetView: no visible global function definition for 'tktoplevel'
widgetView: no visible global function definition for 'tktitle<-'
writeList: no visible global function definition for 'capture.output'
writeList: no visible global function definition for 'tkdelete'
writeList: no visible binding for global variable 'tkinsert'
writeText: no visible global function definition for 'capture.output'
writeText: no visible global function definition for 'tkdelete'
writeText: no visible global function definition for 'tkinsert'
killWin,widgetView: no visible global function definition for
  'tkdestroy'
updateList,widget: no visible binding for global variable 'bName'
winWait,widgetView: no visible global function definition for
  'tkwait.window'
Undefined global functions or variables:
  addVigs2WinMenu bName capture.output tcl tclObj tclObj<- tclVar
  tclvalue tclvalue<- tkbind tkbutton tkcanvas tkcheckbutton
  tkconfigure tkcurselection tkdelete tkdeselect tkdestroy tkentry
  tkfocus tkframe tkget tkgrab.release tkgrab.set tkinsert tklabel
  tklistbox tkmessageBox tkpack tkradiobutton tkscrollbar tkselect
  tkset tktext tktitle<- tktoplevel tkwait.window tkwinfo tkwm.geometry
  tkwm.overrideredirect tkxview tkyview
Consider adding
  importFrom("utils", "capture.output")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  'C:/Users/biocbuild/bbs-3.8-bioc/meat/widgetTools.Rcheck/00check.log'
for details.

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/widgetTools_1.60.0.tar.gz && rm -rf widgetTools.buildbin-libdir && mkdir widgetTools.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=widgetTools.buildbin-libdir widgetTools_1.60.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL widgetTools_1.60.0.zip && rm widgetTools_1.60.0.tar.gz widgetTools_1.60.0.zip
###
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install for i386

* installing *source* package 'widgetTools' ...
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'widgetTools'
    finding HTML links ... done
    basicPW-class                           html  
    button                                  html  
    dropdownList                            html  
    makeViewer                              html  
    oneVScrList                             html  
    safeFileOpen                            html  
    tooltip                                 html  
    widget-class                            html  
    widgetView-class                        html  
    writeText                               html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'widgetTools' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'widgetTools' as widgetTools_1.60.0.zip
* DONE (widgetTools)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'widgetTools' successfully unpacked and MD5 sums checked
In R CMD INSTALL