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This page was generated on 2019-04-16 11:55:18 -0400 (Tue, 16 Apr 2019).
Package 227/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
CGEN 3.18.0 William Wheeler
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | [ OK ] |
Package: CGEN |
Version: 3.18.0 |
Command: rm -rf CGEN.buildbin-libdir && mkdir CGEN.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CGEN_3.18.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CGEN.buildbin-libdir |
StartedAt: 2019-04-16 03:48:57 -0400 (Tue, 16 Apr 2019) |
EndedAt: 2019-04-16 03:49:42 -0400 (Tue, 16 Apr 2019) |
EllapsedTime: 44.4 seconds |
RetCode: 0 |
Status: OK |
PackageFile: CGEN_3.18.0.tgz |
PackageFileSize: 1.726 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf CGEN.buildbin-libdir && mkdir CGEN.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CGEN_3.18.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CGEN.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=CGEN.buildbin-libdir CGEN_3.18.0.tar.gz' >>>>>>> * installing *source* package ‘CGEN’ ... ** libs clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c Additive.c -o Additive.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c CML.c -o CML.o CML.c:132:13: warning: unused function 'print_dVec' [-Wunused-function] static void print_dVec(vec, n, name) ^ 1 warning generated. clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c ccl.c -o ccl.o ccl.c:386:13: warning: function 'tree_print' is not needed and will not be emitted [-Wunneeded-internal-declaration] static void tree_print(tnode *node, int is_root) ^ 1 warning generated. gfortran -fPIC -g -O2 -c csclust.f -o csclust.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c fsclust.c -o fsclust.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c hcl.c -o hcl.o hcl.c:375:13: warning: function 'tree_print' is not needed and will not be emitted [-Wunneeded-internal-declaration] static void tree_print(tnode *node, int is_root) ^ 1 warning generated. clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c pmatch.c -o pmatch.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c score.c -o score.o score.c:18:27: warning: unused variable 'ii' [-Wunused-variable] int nr, nc, i, j, row, ii, nc2; ^ score.c:183:16: warning: unused variable 'p5' [-Wunused-variable] double *p4, *p5, *p6; ^ score.c:183:21: warning: unused variable 'p6' [-Wunused-variable] double *p4, *p5, *p6; ^ score.c:183:11: warning: unused variable 'p4' [-Wunused-variable] double *p4, *p5, *p6; ^ 4 warnings generated. clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o CGEN.so Additive.o CML.o ccl.o csclust.o fsclust.o hcl.o pmatch.o score.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.8-bioc/meat/CGEN.buildbin-libdir/CGEN/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (CGEN) >>>>>>> >>>>>>> FIXING LINKS FOR CGEN.buildbin-libdir/CGEN/libs//CGEN.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgcc_s.1.dylib" "CGEN.buildbin-libdir/CGEN/libs//CGEN.so" install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "CGEN.buildbin-libdir/CGEN/libs//CGEN.so" install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.5.2.dylib" "CGEN.buildbin-libdir/CGEN/libs//CGEN.so" install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.dylib" "CGEN.buildbin-libdir/CGEN/libs//CGEN.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "CGEN.buildbin-libdir/CGEN/libs//CGEN.so" install_name_tool -change "/usr/local/gfortran/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "CGEN.buildbin-libdir/CGEN/libs//CGEN.so" install_name_tool -change "/usr/local/gfortran/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "CGEN.buildbin-libdir/CGEN/libs//CGEN.so"