Hervé Pagès
| Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019) |
| URL: https://git.bioconductor.org/packages/DelayedArray |
| Branch: RELEASE_3_8 |
| Last Commit: 7c23cf4 |
| Last Changed Date: 2018-10-30 13:55:54 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-13 11:27:21 -0400 (Sat, 13 Apr 2019).
| Package 388/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| DelayedArray 0.8.0 Hervé Pagès
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: DelayedArray |
| Version: 0.8.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/DelayedArray_0.8.0.tar.gz && rm -rf DelayedArray.buildbin-libdir && mkdir DelayedArray.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DelayedArray.buildbin-libdir DelayedArray_0.8.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL DelayedArray_0.8.0.zip && rm DelayedArray_0.8.0.tar.gz DelayedArray_0.8.0.zip |
| StartedAt: 2019-04-12 19:05:09 -0400 (Fri, 12 Apr 2019) |
| EndedAt: 2019-04-12 19:06:04 -0400 (Fri, 12 Apr 2019) |
| EllapsedTime: 55.0 seconds |
| RetCode: 0 |
| Status: OK |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/DelayedArray_0.8.0.tar.gz && rm -rf DelayedArray.buildbin-libdir && mkdir DelayedArray.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=DelayedArray.buildbin-libdir DelayedArray_0.8.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL DelayedArray_0.8.0.zip && rm DelayedArray_0.8.0.tar.gz DelayedArray_0.8.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 122k 100 122k 0 0 3164k 0 --:--:-- --:--:-- --:--:-- 3504k
install for i386
* installing *source* package 'DelayedArray' ...
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/S4Vectors/include" -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c R_init_DelayedArray.c -o R_init_DelayedArray.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/S4Vectors/include" -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c S4Vectors_stubs.c -o S4Vectors_stubs.o
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/S4Vectors/include" -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c abind.c -o abind.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o DelayedArray.dll tmp.def R_init_DelayedArray.o S4Vectors_stubs.o abind.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/DelayedArray.buildbin-libdir/DelayedArray/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'aperm' in package 'DelayedArray'
in method for 'coerce' with signature '"dgCMatrix","SparseArraySeed"': no definition for class "dgCMatrix"
in method for 'coerce' with signature '"SparseArraySeed","dgCMatrix"': no definition for class "dgCMatrix"
in method for 'coerce' with signature '"SparseArraySeed","sparseMatrix"': no definition for class "sparseMatrix"
in method for 'coerce' with signature '"DelayedMatrix","dgCMatrix"': no definition for class "dgCMatrix"
in method for 'coerce' with signature '"DelayedMatrix","sparseMatrix"': no definition for class "sparseMatrix"
Creating a generic function for 'sweep' from package 'base' in package 'DelayedArray'
Creating a new generic function for 'apply' in package 'DelayedArray'
Creating a generic function for 'dnorm' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'pnorm' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'qnorm' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'dbinom' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'pbinom' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'qbinom' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'dpois' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'ppois' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'qpois' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'dlogis' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'plogis' from package 'stats' in package 'DelayedArray'
Creating a generic function for 'qlogis' from package 'stats' in package 'DelayedArray'
Creating a new generic function for 'rowMaxs' in package 'DelayedArray'
Creating a new generic function for 'colMaxs' in package 'DelayedArray'
Creating a new generic function for 'rowMins' in package 'DelayedArray'
Creating a new generic function for 'colMins' in package 'DelayedArray'
Creating a new generic function for 'rowRanges' in package 'DelayedArray'
Creating a new generic function for 'colRanges' in package 'DelayedArray'
** help
*** installing help indices
converting help for package 'DelayedArray'
finding HTML links ... done
Array-class html
ArrayGrid-class html
DelayedArray-class html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpA3GyJQ/R.INSTALL105c1e0227af/DelayedArray/man/DelayedArray-class.Rd:113: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpA3GyJQ/R.INSTALL105c1e0227af/DelayedArray/man/DelayedArray-class.Rd:210: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpA3GyJQ/R.INSTALL105c1e0227af/DelayedArray/man/DelayedArray-class.Rd:212: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
DelayedArray-stats html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpA3GyJQ/R.INSTALL105c1e0227af/DelayedArray/man/DelayedArray-stats.Rd:72: file link 'dnorm' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpA3GyJQ/R.INSTALL105c1e0227af/DelayedArray/man/DelayedArray-stats.Rd:72: file link 'dbinom' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpA3GyJQ/R.INSTALL105c1e0227af/DelayedArray/man/DelayedArray-stats.Rd:73: file link 'dpois' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpA3GyJQ/R.INSTALL105c1e0227af/DelayedArray/man/DelayedArray-stats.Rd:73: file link 'dlogis' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpA3GyJQ/R.INSTALL105c1e0227af/DelayedArray/man/DelayedArray-stats.Rd:80: file link 'dnorm' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpA3GyJQ/R.INSTALL105c1e0227af/DelayedArray/man/DelayedArray-stats.Rd:80: file link 'dbinom' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpA3GyJQ/R.INSTALL105c1e0227af/DelayedArray/man/DelayedArray-stats.Rd:81: file link 'dpois' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpA3GyJQ/R.INSTALL105c1e0227af/DelayedArray/man/DelayedArray-stats.Rd:81: file link 'dlogis' in package 'stats' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpA3GyJQ/R.INSTALL105c1e0227af/DelayedArray/man/DelayedArray-stats.Rd:90: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
DelayedArray-utils html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpA3GyJQ/R.INSTALL105c1e0227af/DelayedArray/man/DelayedArray-utils.Rd:92: file link 'Ops' in package 'methods' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpA3GyJQ/R.INSTALL105c1e0227af/DelayedArray/man/DelayedArray-utils.Rd:93: file link 'Math' in package 'methods' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpA3GyJQ/R.INSTALL105c1e0227af/DelayedArray/man/DelayedArray-utils.Rd:93: file link 'Math2' in package 'methods' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpA3GyJQ/R.INSTALL105c1e0227af/DelayedArray/man/DelayedArray-utils.Rd:112: file link 'Summary' in package 'methods' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpA3GyJQ/R.INSTALL105c1e0227af/DelayedArray/man/DelayedArray-utils.Rd:131: file link 'is.na' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpA3GyJQ/R.INSTALL105c1e0227af/DelayedArray/man/DelayedArray-utils.Rd:131: file link '!' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpA3GyJQ/R.INSTALL105c1e0227af/DelayedArray/man/DelayedArray-utils.Rd:133: file link '%*%' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpA3GyJQ/R.INSTALL105c1e0227af/DelayedArray/man/DelayedArray-utils.Rd:153: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpA3GyJQ/R.INSTALL105c1e0227af/DelayedArray/man/DelayedArray-utils.Rd:156: file link 'Ops' in package 'methods' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpA3GyJQ/R.INSTALL105c1e0227af/DelayedArray/man/DelayedArray-utils.Rd:157: file link 'Math' in package 'methods' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpA3GyJQ/R.INSTALL105c1e0227af/DelayedArray/man/DelayedArray-utils.Rd:157: file link 'Math2' in package 'methods' does not exist and so has been treated as a topic
DelayedMatrix-stats html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpA3GyJQ/R.INSTALL105c1e0227af/DelayedArray/man/DelayedMatrix-stats.Rd:79: file link 'rowSums' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpA3GyJQ/R.INSTALL105c1e0227af/DelayedArray/man/DelayedMatrix-stats.Rd:80: file link 'rowMaxs' in package 'matrixStats' does not exist and so has been treated as a topic
DelayedOp-class html
RealizationSink-class html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpA3GyJQ/R.INSTALL105c1e0227af/DelayedArray/man/RealizationSink-class.Rd:62: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpA3GyJQ/R.INSTALL105c1e0227af/DelayedArray/man/RealizationSink-class.Rd:88: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpA3GyJQ/R.INSTALL105c1e0227af/DelayedArray/man/RealizationSink-class.Rd:90: file link 'HDF5-dump-management' in package 'HDF5Array' does not exist and so has been treated as a topic
RleArray-class html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpA3GyJQ/R.INSTALL105c1e0227af/DelayedArray/man/RleArray-class.Rd:71: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpA3GyJQ/R.INSTALL105c1e0227af/DelayedArray/man/RleArray-class.Rd:94: file link 'Rle' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpA3GyJQ/R.INSTALL105c1e0227af/DelayedArray/man/RleArray-class.Rd:104: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpA3GyJQ/R.INSTALL105c1e0227af/DelayedArray/man/RleArray-class.Rd:106: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
SparseArraySeed-class html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpA3GyJQ/R.INSTALL105c1e0227af/DelayedArray/man/SparseArraySeed-class.Rd:70: file link 'arrayInd' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpA3GyJQ/R.INSTALL105c1e0227af/DelayedArray/man/SparseArraySeed-class.Rd:120: file link 'arrayInd' in package 'base' does not exist and so has been treated as a topic
bind-arrays html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpA3GyJQ/R.INSTALL105c1e0227af/DelayedArray/man/bind-arrays.Rd:40: file link 'rbind' in package 'base' does not exist and so has been treated as a topic
blockGrid html
block_processing html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpA3GyJQ/R.INSTALL105c1e0227af/DelayedArray/man/block_processing.Rd:91: file link 'MulticoreParam' in package 'BiocParallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpA3GyJQ/R.INSTALL105c1e0227af/DelayedArray/man/block_processing.Rd:92: file link 'SnowParam' in package 'BiocParallel' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpA3GyJQ/R.INSTALL105c1e0227af/DelayedArray/man/block_processing.Rd:93: file link 'bpparam' in package 'BiocParallel' does not exist and so has been treated as a topic
chunkGrid html
extract_array html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpA3GyJQ/R.INSTALL105c1e0227af/DelayedArray/man/extract_array.Rd:38: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpA3GyJQ/R.INSTALL105c1e0227af/DelayedArray/man/extract_array.Rd:95: file link 'DataFrame' in package 'S4Vectors' does not exist and so has been treated as a topic
linearInd html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpA3GyJQ/R.INSTALL105c1e0227af/DelayedArray/man/linearInd.Rd:9: file link 'arrayInd' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpA3GyJQ/R.INSTALL105c1e0227af/DelayedArray/man/linearInd.Rd:20: file link 'arrayInd' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpA3GyJQ/R.INSTALL105c1e0227af/DelayedArray/man/linearInd.Rd:50: file link 'arrayInd' in package 'base' does not exist and so has been treated as a topic
makeCappedVolumeBox html
mapToGrid html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpA3GyJQ/R.INSTALL105c1e0227af/DelayedArray/man/mapToGrid.Rd:28: file link 'arrayInd' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpA3GyJQ/R.INSTALL105c1e0227af/DelayedArray/man/mapToGrid.Rd:87: file link 'arrayInd' in package 'base' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpA3GyJQ/R.INSTALL105c1e0227af/DelayedArray/man/mapToGrid.Rd:97: file link 'arrayInd' in package 'base' does not exist and so has been treated as a topic
read_block html
realize html
Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpA3GyJQ/R.INSTALL105c1e0227af/DelayedArray/man/realize.Rd:52: file link 'HDF5Array' in package 'HDF5Array' does not exist and so has been treated as a topic
showtree html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'DelayedArray' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/S4Vectors/include" -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c R_init_DelayedArray.c -o R_init_DelayedArray.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/S4Vectors/include" -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c S4Vectors_stubs.c -o S4Vectors_stubs.o
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/S4Vectors/include" -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c abind.c -o abind.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o DelayedArray.dll tmp.def R_init_DelayedArray.o S4Vectors_stubs.o abind.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/DelayedArray.buildbin-libdir/DelayedArray/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'DelayedArray' as DelayedArray_0.8.0.zip
* DONE (DelayedArray)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'DelayedArray' successfully unpacked and MD5 sums checked
In R CMD INSTALL