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This page was generated on 2019-04-13 11:25:55 -0400 (Sat, 13 Apr 2019).
Package 471/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
EnrichedHeatmap 1.12.0 Zuguang Gu
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | WARNINGS | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: EnrichedHeatmap |
Version: 1.12.0 |
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/EnrichedHeatmap_1.12.0.tar.gz && rm -rf EnrichedHeatmap.buildbin-libdir && mkdir EnrichedHeatmap.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=EnrichedHeatmap.buildbin-libdir EnrichedHeatmap_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL EnrichedHeatmap_1.12.0.zip && rm EnrichedHeatmap_1.12.0.tar.gz EnrichedHeatmap_1.12.0.zip |
StartedAt: 2019-04-12 20:26:32 -0400 (Fri, 12 Apr 2019) |
EndedAt: 2019-04-12 20:27:23 -0400 (Fri, 12 Apr 2019) |
EllapsedTime: 50.8 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/EnrichedHeatmap_1.12.0.tar.gz && rm -rf EnrichedHeatmap.buildbin-libdir && mkdir EnrichedHeatmap.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=EnrichedHeatmap.buildbin-libdir EnrichedHeatmap_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL EnrichedHeatmap_1.12.0.zip && rm EnrichedHeatmap_1.12.0.tar.gz EnrichedHeatmap_1.12.0.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 4825k 100 4825k 0 0 40.6M 0 --:--:-- --:--:-- --:--:-- 42.0M install for i386 * installing *source* package 'EnrichedHeatmap' ... ** libs C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c dist_by_closeness.cpp -o dist_by_closeness.o dist_by_closeness.cpp: In function 'float closeness(Rcpp::NumericVector, Rcpp::NumericVector)': dist_by_closeness.cpp:12:27: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] if(std::abs(x1[i] - 0) < 1e-6 | std::abs(x2[j] - 0) < 1e-6) { ^ C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o EnrichedHeatmap.dll tmp.def RcppExports.o dist_by_closeness.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/EnrichedHeatmap.buildbin-libdir/EnrichedHeatmap/libs/i386 ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'EnrichedHeatmap' finding HTML links ... done EnrichedHeatmap-class html EnrichedHeatmap html EnrichedHeatmapList-class html EnrichedHeatmapList html Extract.normalizedMatrix html add.AdditiveUnit html finding level-2 HTML links ... done anno_enriched html as.normalizedMatrix html copyAttr html default_smooth_fun html discretize html dist_by_closeness html draw-EnrichedHeatmap-method html Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpWSNKOW/R.INSTALL24545cae298b/EnrichedHeatmap/man/draw-EnrichedHeatmap-method.rd:16: file link 'draw' in package 'ComplexHeatmap' does not exist and so has been treated as a topic draw-EnrichedHeatmapList-method html Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpWSNKOW/R.INSTALL24545cae298b/EnrichedHeatmap/man/draw-EnrichedHeatmapList-method.rd:18: file link 'make_layout' in package 'ComplexHeatmap' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpWSNKOW/R.INSTALL24545cae298b/EnrichedHeatmap/man/draw-EnrichedHeatmapList-method.rd:18: file link 'draw' in package 'ComplexHeatmap' does not exist and so has been treated as a topic Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpWSNKOW/R.INSTALL24545cae298b/EnrichedHeatmap/man/draw-EnrichedHeatmapList-method.rd:22: file link 'draw' in package 'ComplexHeatmap' does not exist and so has been treated as a topic draw-dispatch html enriched_score html extract_anno_enriched html getSignalsFromList html makeWindows html normalizeToMatrix html print.normalizedMatrix html rbind.normalizedMatrix html show-EnrichedHeatmap-method html show-EnrichedHeatmapList-method html show-dispatch html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'EnrichedHeatmap' ... ** libs C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c dist_by_closeness.cpp -o dist_by_closeness.o dist_by_closeness.cpp: In function 'float closeness(Rcpp::NumericVector, Rcpp::NumericVector)': dist_by_closeness.cpp:12:27: warning: suggest parentheses around comparison in operand of '|' [-Wparentheses] if(std::abs(x1[i] - 0) < 1e-6 | std::abs(x2[j] - 0) < 1e-6) { ^ C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o EnrichedHeatmap.dll tmp.def RcppExports.o dist_by_closeness.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/EnrichedHeatmap.buildbin-libdir/EnrichedHeatmap/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'EnrichedHeatmap' as EnrichedHeatmap_1.12.0.zip * DONE (EnrichedHeatmap) In R CMD INSTALL In R CMD INSTALL * installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library' package 'EnrichedHeatmap' successfully unpacked and MD5 sums checked In R CMD INSTALL