Sergio Picart-Armada
| Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019) |
| URL: https://git.bioconductor.org/packages/FELLA |
| Branch: RELEASE_3_8 |
| Last Commit: b5dd13e |
| Last Changed Date: 2018-10-30 11:42:08 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-16 12:07:17 -0400 (Tue, 16 Apr 2019).
| Package 513/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| FELLA 1.2.0 Sergio Picart-Armada
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK | |
| Package: FELLA |
| Version: 1.2.0 |
| Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:FELLA.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings FELLA_1.2.0.tar.gz |
| StartedAt: 2019-04-15 23:54:26 -0400 (Mon, 15 Apr 2019) |
| EndedAt: 2019-04-15 23:58:00 -0400 (Mon, 15 Apr 2019) |
| EllapsedTime: 214.6 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: FELLA.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:FELLA.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings FELLA_1.2.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.8-bioc/meat/FELLA.Rcheck’ * using R version 3.5.3 (2019-03-11) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘FELLA/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘FELLA’ version ‘1.2.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘FELLA’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
FELLA.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL FELLA ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’ * installing *source* package ‘FELLA’ ... ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (FELLA)
FELLA.Rcheck/tests/testthat.Rout
R version 3.5.3 (2019-03-11) -- "Great Truth"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin15.6.0 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(FELLA)
>
> test_check("FELLA")
|
| | 0%
|
|============== | 20%
|
|============================ | 40%
|
|========================================== | 60%
|
|======================================================== | 80%
|
|======================================================================| 100%
|
| | 0%
|
|======= | 10%
|
|============== | 20%
|
|===================== | 30%
|
|============================ | 40%
|
|=================================== | 50%
|
|========================================== | 60%
|
|================================================= | 70%
|
|======================================================== | 80%
|
|=============================================================== | 90%
|
|======================================================================| 100%
|
| | 0%
|
|======= | 10%
|
|============== | 20%
|
|===================== | 30%
|
|============================ | 40%
|
|=================================== | 50%
|
|========================================== | 60%
|
|================================================= | 70%
|
|======================================================== | 80%
|
|=============================================================== | 90%
|
|======================================================================| 100%
|
| | 0%
|
|======= | 10%
|
|============== | 20%
|
|===================== | 30%
|
|============================ | 40%
|
|=================================== | 50%
|
|========================================== | 60%
|
|================================================= | 70%
|
|======================================================== | 80%
|
|=============================================================== | 90%
|
|======================================================================| 100%
══ testthat results ═══════════════════════════════════════════════════════════
OK: 168 SKIPPED: 0 FAILED: 0
>
> proc.time()
user system elapsed
28.852 7.967 76.430
FELLA.Rcheck/FELLA-Ex.timings
| name | user | system | elapsed | |
| FELLA | 0.378 | 0.043 | 0.433 | |
| FELLA.sample | 0.020 | 0.002 | 0.024 | |
| checkArguments | 0.003 | 0.001 | 0.003 | |
| data-funs | 3.179 | 0.151 | 3.366 | |
| enrich-funs | 3.765 | 0.109 | 3.925 | |
| export-funs | 0.289 | 0.007 | 0.301 | |
| getBackground | 1.830 | 0.025 | 1.876 | |
| getCom | 0.013 | 0.001 | 0.014 | |
| getExcluded | 0.019 | 0.001 | 0.020 | |
| getGraph | 0.017 | 0.001 | 0.017 | |
| getInfo | 0.020 | 0.002 | 0.021 | |
| getInput | 0.018 | 0.003 | 0.021 | |
| getMatrix | 0.023 | 0.001 | 0.026 | |
| getName | 0.018 | 0.001 | 0.019 | |
| getPscores | 0.061 | 0.002 | 0.065 | |
| getPvaluesSize | 0.029 | 0.001 | 0.031 | |
| getStatus | 0.016 | 0.001 | 0.018 | |
| getSums | 0.394 | 0.007 | 0.406 | |
| getValid | 0.033 | 0.002 | 0.035 | |
| infere.con2ec | 0.004 | 0.000 | 0.004 | |
| input.sample | 0.001 | 0.000 | 0.002 | |
| is.FELLA.DATA | 0.018 | 0.001 | 0.020 | |
| is.FELLA.USER | 0.040 | 0.003 | 0.042 | |
| largestcc | 0.021 | 0.001 | 0.022 | |
| launchApp | 0 | 0 | 0 | |
| listApprox | 0.000 | 0.001 | 0.000 | |
| listCategories | 0.000 | 0.000 | 0.001 | |
| listInternalDatabases | 0.001 | 0.000 | 0.002 | |
| listMethods | 0.000 | 0.000 | 0.001 | |
| mytriangle | 0.025 | 0.001 | 0.026 | |
| plotBipartite | 0.088 | 0.004 | 0.095 | |
| plotLegend | 0.027 | 0.001 | 0.029 | |
| sanitise | 0.000 | 0.000 | 0.001 | |