Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-16 11:50:48 -0400 (Tue, 16 Apr 2019).
Package 670/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
GOsummaries 2.18.0 Raivo Kolde
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: GOsummaries |
Version: 2.18.0 |
Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:GOsummaries.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings GOsummaries_2.18.0.tar.gz |
StartedAt: 2019-04-16 00:23:40 -0400 (Tue, 16 Apr 2019) |
EndedAt: 2019-04-16 00:24:21 -0400 (Tue, 16 Apr 2019) |
EllapsedTime: 40.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: GOsummaries.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:GOsummaries.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings GOsummaries_2.18.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.8-bioc/meat/GOsummaries.Rcheck’ * using R version 3.5.3 (2019-03-11) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘GOsummaries/DESCRIPTION’ ... OK * this is package ‘GOsummaries’ version ‘2.18.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘GOsummaries’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE adjust_wordcloud_appearance: no visible global function definition for ‘colorRampPalette’ annotate.gosummaries: no visible global function definition for ‘packageVersion’ gen_wordcloud_legend: no visible global function definition for ‘colorRampPalette’ open_file_con : <anonymous>: no visible global function definition for ‘pdf’ open_file_con : <anonymous>: no visible global function definition for ‘png’ open_file_con : <anonymous>: no visible global function definition for ‘jpeg’ open_file_con : <anonymous>: no visible global function definition for ‘tiff’ open_file_con : <anonymous>: no visible global function definition for ‘bmp’ panel_boxplot : qq: no visible global function definition for ‘boxplot.stats’ panel_boxplot: no visible binding for global variable ‘x’ panel_boxplot: no visible binding for global variable ‘y’ panel_boxplot: no visible binding for global variable ‘Class’ panel_dummy: no visible binding for global variable ‘y’ panel_dummy: no visible binding for global variable ‘x’ plotWordcloud: no visible global function definition for ‘colorRampPalette’ plotWordcloud: no visible global function definition for ‘runif’ plot_motor: no visible global function definition for ‘dev.off’ print.gosummaries: no visible global function definition for ‘head’ pspearman: no visible global function definition for ‘pt’ spearman_mds: no visible global function definition for ‘cor’ Undefined global functions or variables: Class bmp boxplot.stats colorRampPalette cor dev.off head jpeg packageVersion pdf png pt runif tiff x y Consider adding importFrom("grDevices", "bmp", "boxplot.stats", "colorRampPalette", "dev.off", "jpeg", "pdf", "png", "tiff") importFrom("stats", "cor", "pt", "runif") importFrom("utils", "head", "packageVersion") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking compiled code ... NOTE Note: information on .o files is not available * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.8-bioc/meat/GOsummaries.Rcheck/00check.log’ for details.
GOsummaries.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL GOsummaries ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’ * installing *source* package ‘GOsummaries’ ... ** libs g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -c findCoordinates.cpp -o findCoordinates.o g++ -shared -L/home/biocbuild/bbs-3.8-bioc/R/lib -L/usr/local/lib -o GOsummaries.so findCoordinates.o -L/home/biocbuild/bbs-3.8-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.8-bioc/R/library/GOsummaries/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (GOsummaries)
GOsummaries.Rcheck/GOsummaries-Ex.timings
name | user | system | elapsed | |
add_expression.gosummaries | 0 | 0 | 0 | |
add_to_slot.gosummaries | 0.300 | 0.008 | 0.310 | |
customize | 0 | 0 | 0 | |
gosummaries.MArrayLM | 0 | 0 | 0 | |
gosummaries | 0.584 | 0.012 | 0.601 | |
gosummaries.kmeans | 0.000 | 0.000 | 0.001 | |
gosummaries.matrix | 0 | 0 | 0 | |
gosummaries.prcomp | 1.596 | 0.000 | 1.621 | |
panel_boxplot | 0.000 | 0.000 | 0.001 | |
plot.gosummaries | 0.000 | 0.000 | 0.001 | |
plotWordcloud | 0.120 | 0.000 | 0.131 | |