Back to Multiple platform build/check report for BioC 3.8 |
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This page was generated on 2019-04-16 11:47:56 -0400 (Tue, 16 Apr 2019).
Package 680/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
GraphAT 1.54.0 Thomas LaFramboise
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | [ OK ] | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: GraphAT |
Version: 1.54.0 |
Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:GraphAT.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings GraphAT_1.54.0.tar.gz |
StartedAt: 2019-04-16 00:27:00 -0400 (Tue, 16 Apr 2019) |
EndedAt: 2019-04-16 00:28:06 -0400 (Tue, 16 Apr 2019) |
EllapsedTime: 66.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: GraphAT.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:GraphAT.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings GraphAT_1.54.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.8-bioc/meat/GraphAT.Rcheck’ * using R version 3.5.3 (2019-03-11) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘GraphAT/DESCRIPTION’ ... OK * this is package ‘GraphAT’ version ‘1.54.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘GraphAT’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. Packages listed in more than one of Depends, Imports, Suggests, Enhances: ‘graph’ ‘methods’ A package should be listed in only one of these fields. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE prepare_Rd: depthmat.Rd:28: Dropping empty section \references * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... OK * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/home/biocbuild/bbs-3.8-bioc/meat/GraphAT.Rcheck/00check.log’ for details.
GraphAT.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL GraphAT ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’ * installing *source* package ‘GraphAT’ ... ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (GraphAT)
GraphAT.Rcheck/GraphAT-Ex.timings
name | user | system | elapsed | |
Phenoclusters | 1.288 | 0.192 | 1.491 | |
causton | 0.848 | 0.032 | 0.880 | |
cellcycle | 0.240 | 0.032 | 0.272 | |
clust2Mat | 0.000 | 0.000 | 0.001 | |
depthmat | 0.316 | 0.060 | 0.382 | |
getpvalue | 0.008 | 0.000 | 0.007 | |
giaever | 0.920 | 0.008 | 0.939 | |
mRNAclusters | 0.684 | 0.156 | 0.846 | |
makeClustM | 0.000 | 0.000 | 0.001 | |
mat2UndirG | 0.036 | 0.000 | 0.036 | |
permPower | 0.708 | 0.016 | 0.738 | |
perms | 0.000 | 0.000 | 0.001 | |