Yue Li
| Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019) |
| URL: https://git.bioconductor.org/packages/Mirsynergy |
| Branch: RELEASE_3_8 |
| Last Commit: 2410e04 |
| Last Changed Date: 2018-10-30 11:41:53 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-13 11:23:31 -0400 (Sat, 13 Apr 2019).
| Package 976/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| Mirsynergy 1.18.0 Yue Li
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: Mirsynergy |
| Version: 1.18.0 |
| Command: C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:Mirsynergy.install-out.txt --library=C:\Users\biocbuild\bbs-3.8-bioc\R\library --no-vignettes --timings Mirsynergy_1.18.0.tar.gz |
| StartedAt: 2019-04-13 03:53:50 -0400 (Sat, 13 Apr 2019) |
| EndedAt: 2019-04-13 03:56:06 -0400 (Sat, 13 Apr 2019) |
| EllapsedTime: 136.4 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: Mirsynergy.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:Mirsynergy.install-out.txt --library=C:\Users\biocbuild\bbs-3.8-bioc\R\library --no-vignettes --timings Mirsynergy_1.18.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.8-bioc/meat/Mirsynergy.Rcheck' * using R version 3.5.3 (2019-03-11) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'Mirsynergy/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'Mirsynergy' version '1.18.0' * checking package namespace information ... OK * checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib: cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES' OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'Mirsynergy' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in 'tests' ... OK * checking tests ... ** running tests for arch 'i386' ... Running 'runTests.R' OK ** running tests for arch 'x64' ... Running 'runTests.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
Mirsynergy.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/Mirsynergy_1.18.0.tar.gz && rm -rf Mirsynergy.buildbin-libdir && mkdir Mirsynergy.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=Mirsynergy.buildbin-libdir Mirsynergy_1.18.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL Mirsynergy_1.18.0.zip && rm Mirsynergy_1.18.0.tar.gz Mirsynergy_1.18.0.zip
###
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install for i386
* installing *source* package 'Mirsynergy' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'Mirsynergy'
finding HTML links ... done
Mirsynergy-package html
mirsynergy html
plot_module_summary html
plot_modules html
print_modules2 html
summary_modules html
tabular_module html
tcga_brca_testdata html
toy_modules html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'Mirsynergy' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'Mirsynergy' as Mirsynergy_1.18.0.zip
* DONE (Mirsynergy)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'Mirsynergy' successfully unpacked and MD5 sums checked
In R CMD INSTALL
|
Mirsynergy.Rcheck/tests_i386/runTests.Rout
R version 3.5.3 (2019-03-11) -- "Great Truth"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage("Mirsynergy")
Attaching package: 'igraph'
The following objects are masked from 'package:stats':
decompose, spectrum
The following object is masked from 'package:base':
union
Discard row/column of all zeros in W
*Stage I. Cluster 18 miRNA:
Forming new module with seed: miRNA6
add: miRNA18; w.in: 0.655; w.bound: 1.535; new synergy: 0.106
add: miRNA8; w.in: 1.152; w.bound: 1.460; new synergy: 0.134
add: miRNA12; w.in: 2.072; w.bound: 0.540; new synergy: 0.195
Forming new module with seed: miRNA3
add: miRNA9; w.in: 0.735; w.bound: 0.484; new synergy: 0.141
Forming new module with seed: miRNA17
add: miRNA2; w.in: 0.345; w.bound: 1.131; new synergy: 0.063
add: miRNA6; w.in: 0.659; w.bound: 2.466; new synergy: 0.072
add: miRNA18; w.in: 1.540; w.bound: 1.584; new synergy: 0.138
add: miRNA8; w.in: 2.037; w.bound: 1.510; new synergy: 0.150
add: miRNA12; w.in: 2.957; w.bound: 0.590; new synergy: 0.190
remove: miRNA17; w.in: 2.538; w.bound: 0.511; new synergy: 0.195
remove: miRNA2; w.in: 2.072; w.bound: 0.540; new synergy: 0.195
Forming new module with seed: miRNA2
add: miRNA17; w.in: 0.345; w.bound: 1.131; new synergy: 0.063
add: miRNA6; w.in: 0.659; w.bound: 2.466; new synergy: 0.072
add: miRNA18; w.in: 1.540; w.bound: 1.584; new synergy: 0.138
add: miRNA8; w.in: 2.037; w.bound: 1.510; new synergy: 0.150
add: miRNA12; w.in: 2.957; w.bound: 0.590; new synergy: 0.190
remove: miRNA17; w.in: 2.538; w.bound: 0.511; new synergy: 0.195
remove: miRNA2; w.in: 2.072; w.bound: 0.540; new synergy: 0.195
Forming new module with seed: miRNA10
add: miRNA15; w.in: 0.304; w.bound: 0.532; new synergy: 0.063
add: miRNA14; w.in: 0.573; w.bound: 0.649; new synergy: 0.079
add: miRNA17; w.in: 0.796; w.bound: 1.120; new synergy: 0.080
add: miRNA2; w.in: 1.233; w.bound: 1.149; new synergy: 0.100
Forming new module with seed: miRNA16
add: miRNA20; w.in: 0.219; w.bound: 0.218; new synergy: 0.049
add: miRNA17; w.in: 0.373; w.bound: 0.827; new synergy: 0.052
add: miRNA2; w.in: 0.718; w.bound: 1.041; new synergy: 0.074
add: miRNA6; w.in: 1.032; w.bound: 2.376; new synergy: 0.077
add: miRNA18; w.in: 1.913; w.bound: 1.495; new synergy: 0.124
add: miRNA8; w.in: 2.410; w.bound: 1.420; new synergy: 0.135
add: miRNA12; w.in: 3.330; w.bound: 0.500; new synergy: 0.168
Forming new module with seed: miRNA1
add: miRNA19; w.in: 0.375; w.bound: 0.000; new synergy: 0.086
Forming new module with seed: miRNA7
add: miRNA15; w.in: 0.084; w.bound: 0.383; new synergy: 0.019
add: miRNA10; w.in: 0.453; w.bound: 0.398; new synergy: 0.066
add: miRNA14; w.in: 0.736; w.bound: 0.486; new synergy: 0.080
add: miRNA17; w.in: 0.959; w.bound: 0.957; new synergy: 0.080
add: miRNA2; w.in: 1.396; w.bound: 0.986; new synergy: 0.097
Forming new module with seed: miRNA11
add: miRNA3; w.in: 0.122; w.bound: 1.015; new synergy: 0.024
add: miRNA9; w.in: 0.863; w.bound: 0.356; new synergy: 0.120
Forming new module with seed: miRNA5
MRM before merging:
M1 (synergy=0.195232383222109):
miRNA6 miRNA8 miRNA12 miRNA18
M2 (synergy=0.14089190465843):
miRNA3 miRNA9
M3 (synergy=0.195232383222109):
miRNA6 miRNA8 miRNA12 miRNA18
M4 (synergy=0.195232383222109):
miRNA6 miRNA8 miRNA12 miRNA18
M5 (synergy=0.0995481886856942):
miRNA2 miRNA10 miRNA14 miRNA15 miRNA17
M6 (synergy=0.167919254849307):
miRNA2 miRNA6 miRNA8 miRNA12 miRNA16 miRNA17 miRNA18 miRNA20
M7 (synergy=0.0857963527273969):
miRNA1 miRNA19
M8 (synergy=0.0970569736542555):
miRNA2 miRNA7 miRNA10 miRNA14 miRNA15 miRNA17
M9 (synergy=0.119598648023761):
miRNA3 miRNA9 miRNA11
M10 (synergy=0):
miRNA5
Merge cluster threshold: overlap >= 0.80:
MRM after merging/filtering:
M1 (density=3.45e-01; synergy=1.95e-01):
miRNA6 miRNA8 miRNA12 miRNA18
M2 (density=7.35e-01; synergy=1.41e-01):
miRNA3 miRNA9
M3 (density=9.31e-02; synergy=9.71e-02):
miRNA2 miRNA7 miRNA10 miRNA14 miRNA15 miRNA17
M4 (density=1.19e-01; synergy=1.68e-01):
miRNA2 miRNA6 miRNA8 miRNA12 miRNA16 miRNA17 miRNA18 miRNA20
M5 (density=3.75e-01; synergy=8.58e-02):
miRNA1 miRNA19
M6 (density=2.88e-01; synergy=1.2e-01):
miRNA3 miRNA9 miRNA11
Time elapsed for Stage I: 0.030
*Stage II. Grow MRM with mRNA:
Forming new module with seed: miRNA6,miRNA8,miRNA12,miRNA18
add: mRNA9; w.in: 1.225; w.bound: 1.604; new synergy: 0.095
add: mRNA16; w.in: 2.219; w.bound: 2.509; new synergy: 0.133
add: mRNA2; w.in: 3.191; w.bound: 2.584; new synergy: 0.161
add: mRNA20; w.in: 3.895; w.bound: 3.289; new synergy: 0.168
Forming new module with seed: miRNA3,miRNA9
add: mRNA12; w.in: 1.013; w.bound: 1.330; new synergy: 0.121
add: mRNA1; w.in: 1.926; w.bound: 1.715; new synergy: 0.165
Forming new module with seed: miRNA2,miRNA7,miRNA10,miRNA14,miRNA15,miRNA17
add: mRNA2; w.in: 1.047; w.bound: 4.678; new synergy: 0.053
add: mRNA16; w.in: 2.020; w.bound: 5.626; new synergy: 0.085
add: mRNA10; w.in: 2.900; w.bound: 5.695; new synergy: 0.109
add: mRNA17; w.in: 3.766; w.bound: 5.134; new synergy: 0.130
add: mRNA13; w.in: 4.519; w.bound: 4.381; new synergy: 0.146
add: mRNA6; w.in: 5.207; w.bound: 3.693; new synergy: 0.158
add: mRNA20; w.in: 5.911; w.bound: 4.398; new synergy: 0.163
add: mRNA1; w.in: 7.038; w.bound: 4.354; new synergy: 0.179
add: mRNA12; w.in: 7.905; w.bound: 4.499; new synergy: 0.186
add: mRNA15; w.in: 8.304; w.bound: 4.101; new synergy: 0.187
Forming new module with seed: miRNA2,miRNA6,miRNA8,miRNA12,miRNA16,miRNA17,miRNA18,miRNA20
add: mRNA9; w.in: 1.429; w.bound: 4.699; new synergy: 0.059
add: mRNA16; w.in: 2.423; w.bound: 5.604; new synergy: 0.086
add: mRNA2; w.in: 4.299; w.bound: 3.872; new synergy: 0.142
add: mRNA14; w.in: 4.984; w.bound: 3.470; new synergy: 0.154
add: mRNA1; w.in: 5.747; w.bound: 4.154; new synergy: 0.160
add: mRNA20; w.in: 6.985; w.bound: 3.791; new synergy: 0.180
add: mRNA12; w.in: 7.650; w.bound: 4.341; new synergy: 0.182
Forming new module with seed: miRNA1,miRNA19
add: mRNA20; w.in: 0.861; w.bound: 1.365; new synergy: 0.105
add: mRNA16; w.in: 1.565; w.bound: 2.850; new synergy: 0.126
add: mRNA2; w.in: 2.537; w.bound: 2.925; new synergy: 0.164
Forming new module with seed: miRNA3,miRNA9,miRNA11
add: mRNA12; w.in: 1.013; w.bound: 2.104; new synergy: 0.091
add: mRNA1; w.in: 1.926; w.bound: 2.488; new synergy: 0.134
add: mRNA19; w.in: 2.584; w.bound: 2.331; new synergy: 0.153
add: mRNA8; w.in: 3.060; w.bound: 2.037; new synergy: 0.160
Final MRM:
M1 (density=4.43e-02; synergy=1.68e-01):
miRNA6 miRNA8 miRNA12 miRNA18
mRNA2 mRNA9 mRNA16 mRNA20
M2 (density=9.63e-02; synergy=1.65e-01):
miRNA3 miRNA9
mRNA1 mRNA12
M3 (density=2.47e-02; synergy=1.87e-01):
miRNA2 miRNA7 miRNA10 miRNA14 miRNA15 miRNA17
mRNA1 mRNA2 mRNA6 mRNA10 mRNA12 mRNA13 mRNA15 mRNA16 mRNA17 mRNA20
M4 (density=2.32e-02; synergy=1.82e-01):
miRNA2 miRNA6 miRNA8 miRNA12 miRNA16 miRNA17 miRNA18 miRNA20
mRNA1 mRNA2 mRNA9 mRNA12 mRNA14 mRNA16 mRNA20
M5 (density=8.46e-02; synergy=1.64e-01):
miRNA1 miRNA19
mRNA2 mRNA16 mRNA20
M6 (density=4.86e-02; synergy=1.6e-01):
miRNA3 miRNA9 miRNA11
mRNA1 mRNA8 mRNA12 mRNA19
Total time elapsed: 0.170 (sec)
RUNIT TEST PROTOCOL -- Sat Apr 13 03:56:00 2019
***********************************************
Number of test functions: 1
Number of errors: 0
Number of failures: 0
1 Test Suite :
Mirsynergy RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1
Number of errors: 0
Number of failures: 0
>
> proc.time()
user system elapsed
2.06 0.17 2.21
|
Mirsynergy.Rcheck/tests_x64/runTests.Rout
R version 3.5.3 (2019-03-11) -- "Great Truth"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage("Mirsynergy")
Attaching package: 'igraph'
The following objects are masked from 'package:stats':
decompose, spectrum
The following object is masked from 'package:base':
union
Discard row/column of all zeros in W
*Stage I. Cluster 18 miRNA:
Forming new module with seed: miRNA6
add: miRNA18; w.in: 0.655; w.bound: 1.535; new synergy: 0.106
add: miRNA8; w.in: 1.152; w.bound: 1.460; new synergy: 0.134
add: miRNA12; w.in: 2.072; w.bound: 0.540; new synergy: 0.195
Forming new module with seed: miRNA3
add: miRNA9; w.in: 0.735; w.bound: 0.484; new synergy: 0.141
Forming new module with seed: miRNA17
add: miRNA2; w.in: 0.345; w.bound: 1.131; new synergy: 0.063
add: miRNA6; w.in: 0.659; w.bound: 2.466; new synergy: 0.072
add: miRNA18; w.in: 1.540; w.bound: 1.584; new synergy: 0.138
add: miRNA8; w.in: 2.037; w.bound: 1.510; new synergy: 0.150
add: miRNA12; w.in: 2.957; w.bound: 0.590; new synergy: 0.190
remove: miRNA17; w.in: 2.538; w.bound: 0.511; new synergy: 0.195
remove: miRNA2; w.in: 2.072; w.bound: 0.540; new synergy: 0.195
Forming new module with seed: miRNA2
add: miRNA17; w.in: 0.345; w.bound: 1.131; new synergy: 0.063
add: miRNA6; w.in: 0.659; w.bound: 2.466; new synergy: 0.072
add: miRNA18; w.in: 1.540; w.bound: 1.584; new synergy: 0.138
add: miRNA8; w.in: 2.037; w.bound: 1.510; new synergy: 0.150
add: miRNA12; w.in: 2.957; w.bound: 0.590; new synergy: 0.190
remove: miRNA17; w.in: 2.538; w.bound: 0.511; new synergy: 0.195
remove: miRNA2; w.in: 2.072; w.bound: 0.540; new synergy: 0.195
Forming new module with seed: miRNA10
add: miRNA15; w.in: 0.304; w.bound: 0.532; new synergy: 0.063
add: miRNA14; w.in: 0.573; w.bound: 0.649; new synergy: 0.079
add: miRNA17; w.in: 0.796; w.bound: 1.120; new synergy: 0.080
add: miRNA2; w.in: 1.233; w.bound: 1.149; new synergy: 0.100
Forming new module with seed: miRNA16
add: miRNA20; w.in: 0.219; w.bound: 0.218; new synergy: 0.049
add: miRNA17; w.in: 0.373; w.bound: 0.827; new synergy: 0.052
add: miRNA2; w.in: 0.718; w.bound: 1.041; new synergy: 0.074
add: miRNA6; w.in: 1.032; w.bound: 2.376; new synergy: 0.077
add: miRNA18; w.in: 1.913; w.bound: 1.495; new synergy: 0.124
add: miRNA8; w.in: 2.410; w.bound: 1.420; new synergy: 0.135
add: miRNA12; w.in: 3.330; w.bound: 0.500; new synergy: 0.168
Forming new module with seed: miRNA1
add: miRNA19; w.in: 0.375; w.bound: 0.000; new synergy: 0.086
Forming new module with seed: miRNA7
add: miRNA15; w.in: 0.084; w.bound: 0.383; new synergy: 0.019
add: miRNA10; w.in: 0.453; w.bound: 0.398; new synergy: 0.066
add: miRNA14; w.in: 0.736; w.bound: 0.486; new synergy: 0.080
add: miRNA17; w.in: 0.959; w.bound: 0.957; new synergy: 0.080
add: miRNA2; w.in: 1.396; w.bound: 0.986; new synergy: 0.097
Forming new module with seed: miRNA11
add: miRNA3; w.in: 0.122; w.bound: 1.015; new synergy: 0.024
add: miRNA9; w.in: 0.863; w.bound: 0.356; new synergy: 0.120
Forming new module with seed: miRNA5
MRM before merging:
M1 (synergy=0.195232383222109):
miRNA6 miRNA8 miRNA12 miRNA18
M2 (synergy=0.14089190465843):
miRNA3 miRNA9
M3 (synergy=0.195232383222109):
miRNA6 miRNA8 miRNA12 miRNA18
M4 (synergy=0.195232383222109):
miRNA6 miRNA8 miRNA12 miRNA18
M5 (synergy=0.0995481886856942):
miRNA2 miRNA10 miRNA14 miRNA15 miRNA17
M6 (synergy=0.167919254849307):
miRNA2 miRNA6 miRNA8 miRNA12 miRNA16 miRNA17 miRNA18 miRNA20
M7 (synergy=0.0857963527273969):
miRNA1 miRNA19
M8 (synergy=0.0970569736542555):
miRNA2 miRNA7 miRNA10 miRNA14 miRNA15 miRNA17
M9 (synergy=0.119598648023761):
miRNA3 miRNA9 miRNA11
M10 (synergy=0):
miRNA5
Merge cluster threshold: overlap >= 0.80:
MRM after merging/filtering:
M1 (density=3.45e-01; synergy=1.95e-01):
miRNA6 miRNA8 miRNA12 miRNA18
M2 (density=7.35e-01; synergy=1.41e-01):
miRNA3 miRNA9
M3 (density=9.31e-02; synergy=9.71e-02):
miRNA2 miRNA7 miRNA10 miRNA14 miRNA15 miRNA17
M4 (density=1.19e-01; synergy=1.68e-01):
miRNA2 miRNA6 miRNA8 miRNA12 miRNA16 miRNA17 miRNA18 miRNA20
M5 (density=3.75e-01; synergy=8.58e-02):
miRNA1 miRNA19
M6 (density=2.88e-01; synergy=1.2e-01):
miRNA3 miRNA9 miRNA11
Time elapsed for Stage I: 0.040
*Stage II. Grow MRM with mRNA:
Forming new module with seed: miRNA6,miRNA8,miRNA12,miRNA18
add: mRNA9; w.in: 1.225; w.bound: 1.604; new synergy: 0.095
add: mRNA16; w.in: 2.219; w.bound: 2.509; new synergy: 0.133
add: mRNA2; w.in: 3.191; w.bound: 2.584; new synergy: 0.161
add: mRNA20; w.in: 3.895; w.bound: 3.289; new synergy: 0.168
Forming new module with seed: miRNA3,miRNA9
add: mRNA12; w.in: 1.013; w.bound: 1.330; new synergy: 0.121
add: mRNA1; w.in: 1.926; w.bound: 1.715; new synergy: 0.165
Forming new module with seed: miRNA2,miRNA7,miRNA10,miRNA14,miRNA15,miRNA17
add: mRNA2; w.in: 1.047; w.bound: 4.678; new synergy: 0.053
add: mRNA16; w.in: 2.020; w.bound: 5.626; new synergy: 0.085
add: mRNA10; w.in: 2.900; w.bound: 5.695; new synergy: 0.109
add: mRNA17; w.in: 3.766; w.bound: 5.134; new synergy: 0.130
add: mRNA13; w.in: 4.519; w.bound: 4.381; new synergy: 0.146
add: mRNA6; w.in: 5.207; w.bound: 3.693; new synergy: 0.158
add: mRNA20; w.in: 5.911; w.bound: 4.398; new synergy: 0.163
add: mRNA1; w.in: 7.038; w.bound: 4.354; new synergy: 0.179
add: mRNA12; w.in: 7.905; w.bound: 4.499; new synergy: 0.186
add: mRNA15; w.in: 8.304; w.bound: 4.101; new synergy: 0.187
Forming new module with seed: miRNA2,miRNA6,miRNA8,miRNA12,miRNA16,miRNA17,miRNA18,miRNA20
add: mRNA9; w.in: 1.429; w.bound: 4.699; new synergy: 0.059
add: mRNA16; w.in: 2.423; w.bound: 5.604; new synergy: 0.086
add: mRNA2; w.in: 4.299; w.bound: 3.872; new synergy: 0.142
add: mRNA14; w.in: 4.984; w.bound: 3.470; new synergy: 0.154
add: mRNA1; w.in: 5.747; w.bound: 4.154; new synergy: 0.160
add: mRNA20; w.in: 6.985; w.bound: 3.791; new synergy: 0.180
add: mRNA12; w.in: 7.650; w.bound: 4.341; new synergy: 0.182
Forming new module with seed: miRNA1,miRNA19
add: mRNA20; w.in: 0.861; w.bound: 1.365; new synergy: 0.105
add: mRNA16; w.in: 1.565; w.bound: 2.850; new synergy: 0.126
add: mRNA2; w.in: 2.537; w.bound: 2.925; new synergy: 0.164
Forming new module with seed: miRNA3,miRNA9,miRNA11
add: mRNA12; w.in: 1.013; w.bound: 2.104; new synergy: 0.091
add: mRNA1; w.in: 1.926; w.bound: 2.488; new synergy: 0.134
add: mRNA19; w.in: 2.584; w.bound: 2.331; new synergy: 0.153
add: mRNA8; w.in: 3.060; w.bound: 2.037; new synergy: 0.160
Final MRM:
M1 (density=4.43e-02; synergy=1.68e-01):
miRNA6 miRNA8 miRNA12 miRNA18
mRNA2 mRNA9 mRNA16 mRNA20
M2 (density=9.63e-02; synergy=1.65e-01):
miRNA3 miRNA9
mRNA1 mRNA12
M3 (density=2.47e-02; synergy=1.87e-01):
miRNA2 miRNA7 miRNA10 miRNA14 miRNA15 miRNA17
mRNA1 mRNA2 mRNA6 mRNA10 mRNA12 mRNA13 mRNA15 mRNA16 mRNA17 mRNA20
M4 (density=2.32e-02; synergy=1.82e-01):
miRNA2 miRNA6 miRNA8 miRNA12 miRNA16 miRNA17 miRNA18 miRNA20
mRNA1 mRNA2 mRNA9 mRNA12 mRNA14 mRNA16 mRNA20
M5 (density=8.46e-02; synergy=1.64e-01):
miRNA1 miRNA19
mRNA2 mRNA16 mRNA20
M6 (density=4.86e-02; synergy=1.6e-01):
miRNA3 miRNA9 miRNA11
mRNA1 mRNA8 mRNA12 mRNA19
Total time elapsed: 0.180 (sec)
RUNIT TEST PROTOCOL -- Sat Apr 13 03:56:03 2019
***********************************************
Number of test functions: 1
Number of errors: 0
Number of failures: 0
1 Test Suite :
Mirsynergy RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1
Number of errors: 0
Number of failures: 0
>
> proc.time()
user system elapsed
2.42 0.09 2.50
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Mirsynergy.Rcheck/examples_i386/Mirsynergy-Ex.timings
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Mirsynergy.Rcheck/examples_x64/Mirsynergy-Ex.timings
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