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BUILD report for MoonlightR on merida1

This page was generated on 2019-04-16 12:00:02 -0400 (Tue, 16 Apr 2019).

Package 990/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MoonlightR 1.8.0
Antonio Colaprico
Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019)
URL: https://git.bioconductor.org/packages/MoonlightR
Branch: RELEASE_3_8
Last Commit: 5a26351
Last Changed Date: 2018-10-30 11:42:02 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK [ ERROR ] skipped  skipped 

Summary

Package: MoonlightR
Version: 1.8.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MoonlightR
StartedAt: 2019-04-15 21:08:07 -0400 (Mon, 15 Apr 2019)
EndedAt: 2019-04-15 21:09:44 -0400 (Mon, 15 Apr 2019)
EllapsedTime: 97.4 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data MoonlightR
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* checking for file ‘MoonlightR/DESCRIPTION’ ... OK
* preparing ‘MoonlightR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading MoonlightR
Loading required package: doParallel
Loading required package: foreach
Loading required package: iterators
Loading required package: parallel
Warning in rgl.init(initValue, onlyNULL) :
  RGL: GLX extension missing on server
Warning: 'rgl_init' failed, running with rgl.useNULL = TRUE

Setting options('download.file.method.GEOquery'='auto')
Setting options('GEOquery.inmemory.gpl'=FALSE)
sh: line 1: 40210 Abort trap: 6           'convert' 'Moonlight_files/figure-html/unnamed-chunk-2-1.png' -trim 'Moonlight_files/figure-html/unnamed-chunk-2-1.png' > /dev/null
sh: line 1: 40237 Abort trap: 6           'convert' 'Moonlight_files/figure-html/unnamed-chunk-12-1.png' -trim 'Moonlight_files/figure-html/unnamed-chunk-12-1.png' > /dev/null
Quitting from lines 556-567 (Moonlight.Rmd) 
Error: processing vignette 'Moonlight.Rmd' failed with diagnostics:
cannot open the connection to 'https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=pubmed&id=&retmode=xml'
Execution halted