Ji-Ping Wang
| Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019) |
| URL: https://git.bioconductor.org/packages/NuPoP |
| Branch: RELEASE_3_8 |
| Last Commit: c2669a9 |
| Last Changed Date: 2018-10-30 11:41:46 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-16 11:55:19 -0400 (Tue, 16 Apr 2019).
| Package 1070/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| NuPoP 1.32.0 Ji-Ping Wang
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | [ OK ] | |
| Package: NuPoP |
| Version: 1.32.0 |
| Command: rm -rf NuPoP.buildbin-libdir && mkdir NuPoP.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh NuPoP_1.32.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R NuPoP.buildbin-libdir |
| StartedAt: 2019-04-16 04:27:51 -0400 (Tue, 16 Apr 2019) |
| EndedAt: 2019-04-16 04:28:26 -0400 (Tue, 16 Apr 2019) |
| EllapsedTime: 34.9 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: NuPoP_1.32.0.tgz |
| PackageFileSize: 2.001 MiB |
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### Running command:
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### rm -rf NuPoP.buildbin-libdir && mkdir NuPoP.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh NuPoP_1.32.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R NuPoP.buildbin-libdir
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>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=NuPoP.buildbin-libdir NuPoP_1.32.0.tar.gz'
>>>>>>>
* installing *source* package ‘NuPoP’ ...
** libs
gfortran -fPIC -Wall -g -O2 -c vtbfb.f90 -o vtbfb.o
vtbfb.f90:13:32:
character*80 seqName,out1,out2; character*2 tpc
1
Warning: Unused variable ‘out2’ declared at (1) [-Wunused-variable]
gfortran -fPIC -Wall -g -O2 -c vtbfbNL4.f90 -o vtbfbNL4.o
vtbfbNL4.f90:257:106:
if(d>=3) temp=temp*tranL2(w(t-d+1),w(t-d+2),w(t-d+3))*tranL2(c(z-t+1),c(z-t+2),c(z-t+3))/r(t-d+2)
1
Warning: Nonconforming tab character at (1) [-Wtabs]
vtbfbNL4.f90:272:13:
end if
1
Warning: Nonconforming tab character at (1) [-Wtabs]
vtbfbNL4.f90:301:107:
if(d>=3) temp=temp*tranL2(w(t-d+1),w(t-d+2),w(t-d+3))*tranL2(c(z-t+1),c(z-t+2),c(z-t+3))/ra(t-d+2)
1
Warning: Nonconforming tab character at (1) [-Wtabs]
vtbfbNL4.f90:314:23:
tempL=tempL+temp
1
Warning: Nonconforming tab character at (1) [-Wtabs]
vtbfbNL4.f90:335:87:
if(z-t>=3) rb(t)=rb(t)*tranL2(w(t+1),w(t+2),w(t+3))*tranL2(c(1),c(2),c(3))/rb(t+2)
1
Warning: Nonconforming tab character at (1) [-Wtabs]
vtbfbNL4.f90:364:105:
if(d>=3) temp=temp*tranL2(w(t+1),w(t+2),w(t+3))*tranL2(c(z-t-d+1),c(z-t-d+2),c(z-t-d+3))/rb(t+2)
1
Warning: Nonconforming tab character at (1) [-Wtabs]
vtbfbNL4.f90:15:32:
character*80 seqName,out1,out2; character*2 tpc
1
Warning: Unused variable ‘out2’ declared at (1) [-Wunused-variable]
gfortran -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o NuPoP.so vtbfb.o vtbfbNL4.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.8-bioc/meat/NuPoP.buildbin-libdir/NuPoP/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (NuPoP)
>>>>>>>
>>>>>>> FIXING LINKS FOR NuPoP.buildbin-libdir/NuPoP/libs//NuPoP.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgcc_s.1.dylib" "NuPoP.buildbin-libdir/NuPoP/libs//NuPoP.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "NuPoP.buildbin-libdir/NuPoP/libs//NuPoP.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.5.2.dylib" "NuPoP.buildbin-libdir/NuPoP/libs//NuPoP.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.dylib" "NuPoP.buildbin-libdir/NuPoP/libs//NuPoP.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "NuPoP.buildbin-libdir/NuPoP/libs//NuPoP.so"
install_name_tool -change "/usr/local/gfortran/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "NuPoP.buildbin-libdir/NuPoP/libs//NuPoP.so"
install_name_tool -change "/usr/local/gfortran/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgcc_s.1.dylib" "NuPoP.buildbin-libdir/NuPoP/libs//NuPoP.so"
install_name_tool -change "/usr/local/gfortran/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "NuPoP.buildbin-libdir/NuPoP/libs//NuPoP.so"