Charles E. Determan Jr.
| Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019) |
| URL: https://git.bioconductor.org/packages/OmicsMarkeR |
| Branch: RELEASE_3_8 |
| Last Commit: 8b71dd1 |
| Last Changed Date: 2018-10-30 11:41:57 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-13 11:25:10 -0400 (Sat, 13 Apr 2019).
| Package 1084/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| OmicsMarkeR 1.14.0 Charles E. Determan Jr.
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: OmicsMarkeR |
| Version: 1.14.0 |
| Command: C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:OmicsMarkeR.install-out.txt --library=C:\Users\biocbuild\bbs-3.8-bioc\R\library --no-vignettes --timings OmicsMarkeR_1.14.0.tar.gz |
| StartedAt: 2019-04-13 04:16:00 -0400 (Sat, 13 Apr 2019) |
| EndedAt: 2019-04-13 04:22:28 -0400 (Sat, 13 Apr 2019) |
| EllapsedTime: 388.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: OmicsMarkeR.Rcheck |
| Warnings: 0 |
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### Running command:
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### C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:OmicsMarkeR.install-out.txt --library=C:\Users\biocbuild\bbs-3.8-bioc\R\library --no-vignettes --timings OmicsMarkeR_1.14.0.tar.gz
###
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* using log directory 'C:/Users/biocbuild/bbs-3.8-bioc/meat/OmicsMarkeR.Rcheck'
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'OmicsMarkeR/DESCRIPTION' ... OK
* this is package 'OmicsMarkeR' version '1.14.0'
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'OmicsMarkeR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
perm.class 10.01 0.03 10.05
feature.table 9.77 0.11 9.97
perm.features 8.78 0.03 8.81
predictNewClasses 8.80 0.00 8.80
performance.metrics 8.74 0.00 8.73
fs.stability 8.72 0.01 8.74
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
perm.class 10.64 0.03 10.67
feature.table 9.39 0.11 9.50
predictNewClasses 9.50 0.00 9.50
perm.features 9.35 0.00 9.35
performance.metrics 9.05 0.01 9.06
fs.stability 8.97 0.02 8.99
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
OK
** running tests for arch 'x64' ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
OmicsMarkeR.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/OmicsMarkeR_1.14.0.tar.gz && rm -rf OmicsMarkeR.buildbin-libdir && mkdir OmicsMarkeR.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=OmicsMarkeR.buildbin-libdir OmicsMarkeR_1.14.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL OmicsMarkeR_1.14.0.zip && rm OmicsMarkeR_1.14.0.tar.gz OmicsMarkeR_1.14.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
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100 236k 100 236k 0 0 5499k 0 --:--:-- --:--:-- --:--:-- 6052k
install for i386
* installing *source* package 'OmicsMarkeR' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'OmicsMarkeR'
finding HTML links ... done
CLA html
EE html
EM html
ES html
RPT html
aggregation html
bagging.wrapper html
canberra html
canberra_stability html
create.corr.matrix html
create.discr.matrix html
create.random.matrix html
denovo.grid html
extract.args html
extract.features html
feature.table html
fit.only.model html
fs.ensembl.stability html
fs.stability html
jaccard html
kuncheva html
modelList html
modelTuner html
modelTuner_loo html
noise.matrix html
ochiai html
optimize.model html
pairwise.model.stability html
pairwise.stability html
params html
perf.calc html
finding level-2 HTML links ... done
performance.metrics html
performance.stats html
perm.class html
perm.features html
pof html
predictNewClasses html
predicting html
prediction.metrics html
sequester html
sorensen html
spearman html
svm.weights html
svmrfeFeatureRanking html
svmrfeFeatureRankingForMulticlass html
training html
tune.instructions html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'OmicsMarkeR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'OmicsMarkeR' as OmicsMarkeR_1.14.0.zip
* DONE (OmicsMarkeR)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'OmicsMarkeR' successfully unpacked and MD5 sums checked
In R CMD INSTALL
|
OmicsMarkeR.Rcheck/tests_i386/testthat.Rout
R version 3.5.3 (2019-03-11) -- "Great Truth"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(OmicsMarkeR)
>
> test_check("OmicsMarkeR")
== testthat results ===========================================================
OK: 100 SKIPPED: 0 FAILED: 0
>
> proc.time()
user system elapsed
56.53 0.51 57.03
|
OmicsMarkeR.Rcheck/tests_x64/testthat.Rout
R version 3.5.3 (2019-03-11) -- "Great Truth"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(OmicsMarkeR)
>
> test_check("OmicsMarkeR")
solo last variable== testthat results ===========================================================
OK: 100 SKIPPED: 0 FAILED: 0
>
> proc.time()
user system elapsed
57.37 0.37 57.75
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OmicsMarkeR.Rcheck/examples_i386/OmicsMarkeR-Ex.timings
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OmicsMarkeR.Rcheck/examples_x64/OmicsMarkeR-Ex.timings
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