Yuliya V Karpievitch
| Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019) |
| URL: https://git.bioconductor.org/packages/ProteoMM |
| Branch: RELEASE_3_8 |
| Last Commit: a295c86 |
| Last Changed Date: 2019-01-04 13:16:04 -0400 (Fri, 04 Jan 2019) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-13 11:29:50 -0400 (Sat, 13 Apr 2019).
| Package 1207/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| ProteoMM 1.0.1 Yuliya V Karpievitch
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: ProteoMM |
| Version: 1.0.1 |
| Command: C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ProteoMM.install-out.txt --library=C:\Users\biocbuild\bbs-3.8-bioc\R\library --no-vignettes --timings ProteoMM_1.0.1.tar.gz |
| StartedAt: 2019-04-13 04:42:47 -0400 (Sat, 13 Apr 2019) |
| EndedAt: 2019-04-13 04:46:57 -0400 (Sat, 13 Apr 2019) |
| EllapsedTime: 250.5 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: ProteoMM.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ProteoMM.install-out.txt --library=C:\Users\biocbuild\bbs-3.8-bioc\R\library --no-vignettes --timings ProteoMM_1.0.1.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'C:/Users/biocbuild/bbs-3.8-bioc/meat/ProteoMM.Rcheck'
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ProteoMM/DESCRIPTION' ... OK
* this is package 'ProteoMM' version '1.0.1'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ProteoMM' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... NOTE
License components which are templates and need '+ file LICENSE':
MIT
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
prot_level_multi_part 20.39 0.01 20.41
subset_proteins 6.55 0.02 6.57
prot_level_multiMat_PresAbs 6.28 0.03 6.31
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
prot_level_multi_part 22.86 0.01 22.89
peptideLevel_PresAbsDE 7.40 0.00 7.41
prot_level_multiMat_PresAbs 7.31 0.00 7.32
subset_proteins 7.07 0.00 7.06
get_presAbs_prots 7.01 0.00 7.02
peptideLevel_DE 7.00 0.00 7.00
plot_volcano 5.17 0.00 5.17
plot_3_pep_trends_NOfile 5.04 0.00 5.03
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'C:/Users/biocbuild/bbs-3.8-bioc/meat/ProteoMM.Rcheck/00check.log'
for details.
ProteoMM.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/ProteoMM_1.0.1.tar.gz && rm -rf ProteoMM.buildbin-libdir && mkdir ProteoMM.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ProteoMM.buildbin-libdir ProteoMM_1.0.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL ProteoMM_1.0.1.zip && rm ProteoMM_1.0.1.tar.gz ProteoMM_1.0.1.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 110k 100 110k 0 0 2695k 0 --:--:-- --:--:-- --:--:-- 2975k
install for i386
* installing *source* package 'ProteoMM' ...
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'ProteoMM'
finding HTML links ... done
MBimpute html
convert_log2 html
eig_norm1 html
eig_norm2 html
eigen_pi html
g.test html
get_presAbs_prots html
hs_peptides html
makeLMFormula html
make_intencities html
make_meta html
mm_peptides html
peptideLevel_DE html
peptideLevel_PresAbsDE html
plot_1prot html
plot_3_pep_trends_NOfile html
plot_volcano html
plot_volcano_wLab html
prot_level_multiMat_PresAbs html
prot_level_multi_part html
subset_proteins html
sva.id html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'ProteoMM' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ProteoMM' as ProteoMM_1.0.1.zip
* DONE (ProteoMM)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'ProteoMM' successfully unpacked and MD5 sums checked
In R CMD INSTALL
|
ProteoMM.Rcheck/examples_i386/ProteoMM-Ex.timings
|
ProteoMM.Rcheck/examples_x64/ProteoMM-Ex.timings
|