Package: QSutils

Version: 1.0.0

Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:QSutils.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings QSutils_1.0.0.tar.gz

StartedAt: 2019-04-16 02:18:34 -0400 (Tue, 16 Apr 2019)

EndedAt: 2019-04-16 02:19:48 -0400 (Tue, 16 Apr 2019)

EllapsedTime: 74.1 seconds

RetCode: 0

Status:  OK

CheckDir: QSutils.Rcheck

Warnings: 0

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:QSutils.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings QSutils_1.0.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.8-bioc/meat/QSutils.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘QSutils/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘QSutils’ version ‘1.0.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘QSutils’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL QSutils
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’
* installing *source* package ‘QSutils’ ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (QSutils)

name	user	system	elapsed
Collapse	0.168	0.008	0.200
ConsSeq	0.036	0.000	0.035
CorrectGapsAndNs	0.004	0.004	0.009
DBrule	0.068	0.008	0.078
DNA.dist	0.012	0.000	0.011
DSFT	0.008	0.000	0.009
Diverge	0.004	0.000	0.004
DottedAlignment	0.012	0.000	0.013
FAD	0.012	0.000	0.010
FreqMat	0.020	0.004	0.023
GenerateVars	0.004	0.000	0.005
GenotypeStandards_A-H.fas	0.004	0.004	0.009
GetInfProfile	0.028	0.000	0.026
GetQSData	0.404	0.016	0.423
GetRandomSeq	0	0	0
GiniSimpson	0	0	0
HCq	0.008	0.000	0.007
Hill	0.004	0.000	0.005
IntersectStrandHpls	0.124	0.000	0.127
MutationFreq	0.688	0.008	0.699
MutsTbl	0.024	0.004	0.025
NucleotideDiversity	0.008	0.000	0.010
PolyDist	0.036	0.000	0.039
Rao	0.016	0.000	0.018
ReadAmplSeqs	0.044	0.000	0.041
Renyi	0.000	0.004	0.006
ReportVariants	0.024	0.000	0.024
SegSites	0.012	0.000	0.014
Shannon	0.000	0.000	0.001
SortByMutations	0.696	0.008	0.703
SummaryMuts	0.028	0.000	0.026
TotalMutations	0.024	0.000	0.026
Toy.GapsAndNs.fna	0.076	0.004	0.077
ToyData_10_50_1000.fna	0.036	0.000	0.039
ToyData_FWReads.fna	0.108	0.000	0.112
ToyData_RVReads.fna	0.108	0.000	0.109
UniqueMutations	0.016	0.000	0.016
Unknown-Genotype.fna	0.012	0.000	0.013
fn.ab	0.004	0.000	0.005
geom.series	0.004	0.000	0.003