Back to Multiple platform build/check report for BioC 3.8 |
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This page was generated on 2019-04-16 11:59:19 -0400 (Tue, 16 Apr 2019).
Package 1312/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
RImmPort 1.10.0 Zicheng Hu
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK |
Package: RImmPort |
Version: 1.10.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:RImmPort.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings RImmPort_1.10.0.tar.gz |
StartedAt: 2019-04-16 02:22:42 -0400 (Tue, 16 Apr 2019) |
EndedAt: 2019-04-16 02:23:36 -0400 (Tue, 16 Apr 2019) |
EllapsedTime: 53.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: RImmPort.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:RImmPort.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings RImmPort_1.10.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.8-bioc/meat/RImmPort.Rcheck’ * using R version 3.5.3 (2019-03-11) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘RImmPort/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘RImmPort’ version ‘1.10.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘RImmPort’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE buildNewSqliteDb: no visible global function definition for ‘dbListTables’ Undefined global functions or variables: dbListTables * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.8-bioc/meat/RImmPort.Rcheck/00check.log’ for details.
RImmPort.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL RImmPort ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’ * installing *source* package ‘RImmPort’ ... ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (RImmPort)
RImmPort.Rcheck/RImmPort-Ex.timings
name | user | system | elapsed | |
Events-class | 2.108 | 0.882 | 0.992 | |
Findings-class | 0.982 | 0.949 | 0.376 | |
Interventions-class | 0.925 | 1.005 | 0.305 | |
SpecialPurpose-class | 1.024 | 1.119 | 0.289 | |
Study-class | 1.116 | 1.218 | 0.303 | |
TrialDesign-class | 1.242 | 1.334 | 0.334 | |
buildNewSqliteDb | 0.005 | 0.005 | 0.001 | |
getAssayDataOfStudies | 0.486 | 0.488 | 0.131 | |
getDomainCode | 0.002 | 0.003 | 0.001 | |
getDomainDataOfStudies | 0.261 | 0.304 | 0.075 | |
getListOfAssayTypes | 0.001 | 0.001 | 0.001 | |
getListOfDomains | 0.001 | 0.001 | 0.000 | |
getListOfStudies | 0.577 | 0.094 | 0.072 | |
getStudiesWithSpecificAssayData | 0.044 | 0.004 | 0.049 | |
getStudiesWithSpecificDomainData | 0.045 | 0.004 | 0.049 | |
getStudy | 0.551 | 0.609 | 0.247 | |
loadSerializedStudyData | 0.032 | 0.039 | 0.010 | |
mergeDomainAndSupplemental | 0.435 | 0.578 | 0.131 | |
serialzeStudyData | 1.782 | 1.991 | 0.525 | |
setImmPortDataSource | 0.158 | 0.163 | 0.062 | |