Nan Xiao
| Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019) |
| URL: https://git.bioconductor.org/packages/Rcpi |
| Branch: RELEASE_3_8 |
| Last Commit: 7081799 |
| Last Changed Date: 2019-02-24 21:37:53 -0400 (Sun, 24 Feb 2019) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-16 11:50:26 -0400 (Tue, 16 Apr 2019).
| Package 1268/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| Rcpi 1.18.2 Nan Xiao
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | [ OK ] | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: Rcpi |
| Version: 1.18.2 |
| Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:Rcpi.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings Rcpi_1.18.2.tar.gz |
| StartedAt: 2019-04-16 02:26:44 -0400 (Tue, 16 Apr 2019) |
| EndedAt: 2019-04-16 02:29:36 -0400 (Tue, 16 Apr 2019) |
| EllapsedTime: 172.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: Rcpi.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:Rcpi.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings Rcpi_1.18.2.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.8-bioc/meat/Rcpi.Rcheck’ * using R version 3.5.3 (2019-03-11) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘Rcpi/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘Rcpi’ version ‘1.18.2’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘Rcpi’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘runTests.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
Rcpi.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL Rcpi ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’ * installing *source* package ‘Rcpi’ ... ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (Rcpi)
Rcpi.Rcheck/tests/runTests.Rout
R version 3.5.3 (2019-03-11) -- "Great Truth"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> BiocGenerics:::testPackage('Rcpi')
RUNIT TEST PROTOCOL -- Tue Apr 16 02:29:24 2019
***********************************************
Number of test functions: 11
Number of errors: 0
Number of failures: 0
1 Test Suite :
Rcpi RUnit Tests - 11 test functions, 0 errors, 0 failures
Number of test functions: 11
Number of errors: 0
Number of failures: 0
>
> proc.time()
user system elapsed
7.608 0.400 7.936
Rcpi.Rcheck/Rcpi-Ex.timings
| name | user | system | elapsed | |
| AA2DACOR | 0.016 | 0.004 | 0.021 | |
| AA3DMoRSE | 0.000 | 0.000 | 0.001 | |
| AAACF | 0.004 | 0.000 | 0.007 | |
| AABLOSUM100 | 0.000 | 0.000 | 0.001 | |
| AABLOSUM45 | 0.004 | 0.000 | 0.001 | |
| AABLOSUM50 | 0.000 | 0.000 | 0.001 | |
| AABLOSUM62 | 0.004 | 0.000 | 0.001 | |
| AABLOSUM80 | 0.000 | 0.000 | 0.006 | |
| AABurden | 0.004 | 0.000 | 0.001 | |
| AACPSA | 0.000 | 0.000 | 0.002 | |
| AAConn | 0.000 | 0.000 | 0.001 | |
| AAConst | 0.000 | 0.000 | 0.001 | |
| AADescAll | 0.000 | 0.000 | 0.001 | |
| AAEdgeAdj | 0.000 | 0.000 | 0.001 | |
| AAEigIdx | 0.000 | 0.000 | 0.001 | |
| AAFGC | 0.004 | 0.000 | 0.003 | |
| AAGETAWAY | 0.000 | 0.000 | 0.002 | |
| AAGeom | 0.004 | 0.000 | 0.001 | |
| AAInfo | 0.000 | 0.000 | 0.001 | |
| AAMOE2D | 0.000 | 0.000 | 0.001 | |
| AAMOE3D | 0.000 | 0.000 | 0.001 | |
| AAMetaInfo | 0.004 | 0.000 | 0.001 | |
| AAMolProp | 0.000 | 0.000 | 0.001 | |
| AAPAM120 | 0.004 | 0.000 | 0.001 | |
| AAPAM250 | 0.000 | 0.000 | 0.001 | |
| AAPAM30 | 0.004 | 0.000 | 0.001 | |
| AAPAM40 | 0.000 | 0.000 | 0.001 | |
| AAPAM70 | 0.004 | 0.000 | 0.001 | |
| AARDF | 0.000 | 0.000 | 0.001 | |
| AARandic | 0.000 | 0.004 | 0.001 | |
| AATopo | 0.000 | 0.000 | 0.002 | |
| AATopoChg | 0.000 | 0.000 | 0.002 | |
| AAWHIM | 0.000 | 0.000 | 0.002 | |
| AAWalk | 0.004 | 0.000 | 0.001 | |
| AAindex | 0.000 | 0.000 | 0.001 | |
| OptAA3d | 0 | 0 | 0 | |
| acc | 0.008 | 0.008 | 0.016 | |
| calcDrugFPSim | 1.864 | 0.052 | 1.270 | |
| calcDrugMCSSim | 0.004 | 0.004 | 0.019 | |
| calcParProtGOSim | 0.000 | 0.000 | 0.001 | |
| calcParProtSeqSim | 0.008 | 0.000 | 0.023 | |
| calcTwoProtGOSim | 0.004 | 0.000 | 0.000 | |
| calcTwoProtSeqSim | 0.000 | 0.000 | 0.002 | |
| checkProt | 0.004 | 0.000 | 0.002 | |
| convMolFormat | 0.000 | 0.000 | 0.013 | |
| extractDrugAIO | 0.004 | 0.000 | 0.000 | |
| extractDrugALOGP | 0.000 | 0.000 | 0.001 | |
| extractDrugAminoAcidCount | 0 | 0 | 0 | |
| extractDrugApol | 0.000 | 0.000 | 0.001 | |
| extractDrugAromaticAtomsCount | 0.000 | 0.000 | 0.001 | |
| extractDrugAromaticBondsCount | 0.000 | 0.000 | 0.001 | |
| extractDrugAtomCount | 0.000 | 0.000 | 0.001 | |
| extractDrugAutocorrelationCharge | 0 | 0 | 0 | |
| extractDrugAutocorrelationMass | 0.000 | 0.000 | 0.001 | |
| extractDrugAutocorrelationPolarizability | 0.000 | 0.000 | 0.001 | |
| extractDrugBCUT | 0.004 | 0.000 | 0.000 | |
| extractDrugBPol | 0.000 | 0.000 | 0.001 | |
| extractDrugBondCount | 0 | 0 | 0 | |
| extractDrugCPSA | 0.000 | 0.000 | 0.001 | |
| extractDrugCarbonTypes | 0 | 0 | 0 | |
| extractDrugChiChain | 0.000 | 0.000 | 0.001 | |
| extractDrugChiCluster | 0.000 | 0.000 | 0.001 | |
| extractDrugChiPath | 0.000 | 0.000 | 0.001 | |
| extractDrugChiPathCluster | 0 | 0 | 0 | |
| extractDrugDescOB | 0.016 | 0.008 | 0.028 | |
| extractDrugECI | 0.000 | 0.000 | 0.001 | |
| extractDrugEstate | 0.000 | 0.000 | 0.001 | |
| extractDrugEstateComplete | 0.000 | 0.000 | 0.003 | |
| extractDrugExtended | 0.000 | 0.000 | 0.001 | |
| extractDrugExtendedComplete | 0.000 | 0.000 | 0.001 | |
| extractDrugFMF | 0.000 | 0.000 | 0.003 | |
| extractDrugFragmentComplexity | 0.004 | 0.000 | 0.005 | |
| extractDrugGraph | 0 | 0 | 0 | |
| extractDrugGraphComplete | 0.000 | 0.000 | 0.001 | |
| extractDrugGravitationalIndex | 0.004 | 0.000 | 0.001 | |
| extractDrugHBondAcceptorCount | 0.000 | 0.000 | 0.001 | |
| extractDrugHBondDonorCount | 0.000 | 0.000 | 0.001 | |
| extractDrugHybridization | 0.000 | 0.000 | 0.001 | |
| extractDrugHybridizationComplete | 0.000 | 0.000 | 0.001 | |
| extractDrugHybridizationRatio | 0.000 | 0.004 | 0.001 | |
| extractDrugIPMolecularLearning | 0.000 | 0.000 | 0.001 | |
| extractDrugKR | 0.000 | 0.000 | 0.001 | |
| extractDrugKRComplete | 0.000 | 0.000 | 0.001 | |
| extractDrugKappaShapeIndices | 0.000 | 0.000 | 0.003 | |
| extractDrugKierHallSmarts | 0.000 | 0.000 | 0.003 | |
| extractDrugLargestChain | 0.000 | 0.000 | 0.003 | |
| extractDrugLargestPiSystem | 0.000 | 0.000 | 0.001 | |
| extractDrugLengthOverBreadth | 0.000 | 0.000 | 0.003 | |
| extractDrugLongestAliphaticChain | 0.000 | 0.004 | 0.002 | |
| extractDrugMACCS | 0.000 | 0.000 | 0.004 | |
| extractDrugMACCSComplete | 0 | 0 | 0 | |
| extractDrugMDE | 0.000 | 0.000 | 0.001 | |
| extractDrugMannholdLogP | 0 | 0 | 0 | |
| extractDrugMomentOfInertia | 0.004 | 0.000 | 0.001 | |
| extractDrugOBFP2 | 0.000 | 0.008 | 0.029 | |
| extractDrugOBFP3 | 0.096 | 0.020 | 0.120 | |
| extractDrugOBFP4 | 0.004 | 0.004 | 0.009 | |
| extractDrugOBMACCS | 0.016 | 0.000 | 0.017 | |
| extractDrugPetitjeanNumber | 0.000 | 0.000 | 0.001 | |
| extractDrugPetitjeanShapeIndex | 0.000 | 0.000 | 0.001 | |
| extractDrugPubChem | 0.000 | 0.000 | 0.001 | |
| extractDrugPubChemComplete | 0.000 | 0.000 | 0.001 | |
| extractDrugRotatableBondsCount | 0.004 | 0.000 | 0.001 | |
| extractDrugRuleOfFive | 0.000 | 0.000 | 0.001 | |
| extractDrugShortestPath | 0 | 0 | 0 | |
| extractDrugShortestPathComplete | 0.004 | 0.000 | 0.001 | |
| extractDrugStandard | 0.000 | 0.000 | 0.001 | |
| extractDrugStandardComplete | 0 | 0 | 0 | |
| extractDrugTPSA | 0.000 | 0.000 | 0.001 | |
| extractDrugVABC | 0 | 0 | 0 | |
| extractDrugVAdjMa | 0.004 | 0.000 | 0.001 | |
| extractDrugWHIM | 0.000 | 0.000 | 0.001 | |
| extractDrugWeight | 0 | 0 | 0 | |
| extractDrugWeightedPath | 0.004 | 0.000 | 0.001 | |
| extractDrugWienerNumbers | 0.000 | 0.000 | 0.001 | |
| extractDrugXLogP | 0 | 0 | 0 | |
| extractDrugZagrebIndex | 0.000 | 0.000 | 0.001 | |
| extractPCMBLOSUM | 0.008 | 0.004 | 0.013 | |
| extractPCMDescScales | 0.012 | 0.000 | 0.015 | |
| extractPCMFAScales | 0.020 | 0.000 | 0.025 | |
| extractPCMMDSScales | 0.008 | 0.004 | 0.015 | |
| extractPCMPropScales | 0.016 | 0.000 | 0.019 | |
| extractPCMScales | 0.032 | 0.000 | 0.035 | |
| extractProtAAC | 0.004 | 0.000 | 0.003 | |
| extractProtAPAAC | 1.304 | 0.008 | 1.363 | |
| extractProtCTDC | 0.004 | 0.000 | 0.004 | |
| extractProtCTDD | 0.004 | 0.004 | 0.006 | |
| extractProtCTDT | 0.008 | 0.000 | 0.007 | |
| extractProtCTriad | 0.136 | 0.004 | 0.141 | |
| extractProtDC | 0.000 | 0.004 | 0.005 | |
| extractProtGeary | 0.188 | 0.004 | 0.190 | |
| extractProtMoran | 0.172 | 0.004 | 0.176 | |
| extractProtMoreauBroto | 0.188 | 0.000 | 0.189 | |
| extractProtPAAC | 0.728 | 0.000 | 0.755 | |
| extractProtPSSM | 0.000 | 0.000 | 0.001 | |
| extractProtPSSMAcc | 0.000 | 0.000 | 0.002 | |
| extractProtPSSMFeature | 0.000 | 0.000 | 0.001 | |
| extractProtQSO | 1.160 | 0.000 | 1.219 | |
| extractProtSOCN | 1.400 | 0.000 | 1.402 | |
| extractProtTC | 0.048 | 0.032 | 0.079 | |
| getCPI | 0.004 | 0.000 | 0.004 | |
| getDrug | 0 | 0 | 0 | |
| getFASTAFromKEGG | 0 | 0 | 0 | |
| getFASTAFromUniProt | 0 | 0 | 0 | |
| getMolFromCAS | 0 | 0 | 0 | |
| getMolFromChEMBL | 0.000 | 0.000 | 0.001 | |
| getMolFromDrugBank | 0.000 | 0.004 | 0.000 | |
| getMolFromKEGG | 0 | 0 | 0 | |
| getMolFromPubChem | 0 | 0 | 0 | |
| getPDBFromRCSBPDB | 0 | 0 | 0 | |
| getPPI | 0.004 | 0.000 | 0.004 | |
| getProt | 0 | 0 | 0 | |
| getSeqFromKEGG | 0 | 0 | 0 | |
| getSeqFromRCSBPDB | 0 | 0 | 0 | |
| getSeqFromUniProt | 0 | 0 | 0 | |
| getSmiFromChEMBL | 0 | 0 | 0 | |
| getSmiFromDrugBank | 0 | 0 | 0 | |
| getSmiFromKEGG | 0.000 | 0.000 | 0.001 | |
| getSmiFromPubChem | 0 | 0 | 0 | |
| readFASTA | 0.004 | 0.000 | 0.002 | |
| readMolFromSDF | 0.004 | 0.000 | 0.002 | |
| readMolFromSmi | 0.000 | 0.000 | 0.001 | |
| readPDB | 1.652 | 0.000 | 1.712 | |
| searchDrug | 0.000 | 0.004 | 0.001 | |
| segProt | 0.000 | 0.004 | 0.003 | |