Back to Multiple platform build/check report for BioC 3.8 |
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This page was generated on 2019-04-13 11:26:13 -0400 (Sat, 13 Apr 2019).
Package 1388/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
SC3 1.10.1 Vladimir Kiselev
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | [ OK ] | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: SC3 |
Version: 1.10.1 |
Command: rm -rf SC3.buildbin-libdir && mkdir SC3.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SC3.buildbin-libdir SC3_1.10.1.tar.gz |
StartedAt: 2019-04-13 07:55:10 -0400 (Sat, 13 Apr 2019) |
EndedAt: 2019-04-13 07:56:02 -0400 (Sat, 13 Apr 2019) |
EllapsedTime: 51.6 seconds |
RetCode: 0 |
Status: OK |
PackageFile: SC3_1.10.1.zip |
PackageFileSize: 3.954 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf SC3.buildbin-libdir && mkdir SC3.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SC3.buildbin-libdir SC3_1.10.1.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'SC3' ... ** libs C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppArmadillo/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o C:/Rtools/mingw_32/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppArmadillo/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c cppFunctions.cpp -o cppFunctions.o cppFunctions.cpp: In function 'arma::mat consmx(arma::mat)': cppFunctions.cpp:63:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (j = 0; j < dat.n_cols; j++) { ^ cppFunctions.cpp:64:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (i = 0; i < dat.n_rows; i++) { ^ cppFunctions.cpp:65:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (k = i + 1; k < dat.n_rows; k++) { ^ C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o SC3.dll tmp.def RcppExports.o cppFunctions.o -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lRlapack -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/i386 -lR installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/SC3.buildbin-libdir/SC3/libs/i386 ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'SC3' finding HTML links ... done ED1 html ED2 html ann html calculate_distance html calculate_stability html consensus_matrix html consmx html estkTW html get_auroc html get_biolgy html get_de_genes html get_marker_genes html get_outl_cells html get_processed_dataset html markers_for_heatmap html norm_laplacian html organise_de_genes html organise_marker_genes html prepare_for_svm html reindex_clusters html sc3 html sc3_calc_biology html sc3_calc_consens html sc3_calc_dists html sc3_calc_transfs html sc3_estimate_k html sc3_export_results_xls html sc3_interactive html sc3_kmeans html sc3_plot_cluster_stability html sc3_plot_consensus html sc3_plot_de_genes html sc3_plot_expression html sc3_plot_markers html sc3_plot_silhouette html sc3_prepare html sc3_run_svm html support_vector_machines html tmult html transformation html yan html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'SC3' ... ** libs C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppArmadillo/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o C:/Rtools/mingw_64/bin/g++ -I"C:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/include" -DNDEBUG -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"C:/Users/biocbuild/bbs-3.8-bioc/R/library/RcppArmadillo/include" -I"C:/extsoft/include" -O2 -Wall -mtune=generic -c cppFunctions.cpp -o cppFunctions.o cppFunctions.cpp: In function 'arma::mat consmx(arma::mat)': cppFunctions.cpp:63:16: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (j = 0; j < dat.n_cols; j++) { ^ cppFunctions.cpp:64:17: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (i = 0; i < dat.n_rows; i++) { ^ cppFunctions.cpp:65:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for (k = i + 1; k < dat.n_rows; k++) { ^ C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o SC3.dll tmp.def RcppExports.o cppFunctions.o -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lRlapack -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lRblas -lgfortran -lm -lquadmath -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.8-B/R/bin/x64 -lR installing to C:/Users/biocbuild/bbs-3.8-bioc/meat/SC3.buildbin-libdir/SC3/libs/x64 ** testing if installed package can be loaded * MD5 sums packaged installation of 'SC3' as SC3_1.10.1.zip * DONE (SC3) In R CMD INSTALL In R CMD INSTALL