Back to Multiple platform build/check report for BioC 3.8 |
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This page was generated on 2019-04-13 11:26:02 -0400 (Sat, 13 Apr 2019).
Package 1475/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
SNPhood 1.12.0 Christian Arnold
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | NA | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | [ OK ] | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: SNPhood |
Version: 1.12.0 |
Command: rm -rf SNPhood.buildbin-libdir && mkdir SNPhood.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SNPhood.buildbin-libdir SNPhood_1.12.0.tar.gz |
StartedAt: 2019-04-13 07:58:41 -0400 (Sat, 13 Apr 2019) |
EndedAt: 2019-04-13 07:59:39 -0400 (Sat, 13 Apr 2019) |
EllapsedTime: 57.5 seconds |
RetCode: 0 |
Status: OK |
PackageFile: SNPhood_1.12.0.zip |
PackageFileSize: 6.909 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf SNPhood.buildbin-libdir && mkdir SNPhood.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=SNPhood.buildbin-libdir SNPhood_1.12.0.tar.gz ### ############################################################################## ############################################################################## install for i386 * installing *source* package 'SNPhood' ... ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'SNPhood' finding HTML links ... done SNPhood-class html SNPhood html SNPhood.o html analyzeSNPhood html finding level-2 HTML links ... done annotation-methods html annotationBins html annotationBins2 html annotationDatasets html annotationReadGroups html annotationRegions html associateGenotypes html bins-methods html changeObjectIntegrityChecking html collectFiles html Rd warning: C:/Users/biocbuild/bbs-3.8-bioc/tmpdir/RtmpwPSRoN/R.INSTALL245c58035d1e/SNPhood/man/collectFiles.Rd:46: file link 'path' in package 'Rsamtools' does not exist and so has been treated as a topic convertToAllelicFractions html counts-method html datasets-methods html deleteDatasets html deleteReadGroups html deleteRegions html enrichment-methods html getDefaultParameterList html mergeReadGroups html parameters-methods html plotAllelicBiasResults html plotAllelicBiasResultsOverview html plotAndCalculateCorrelationDatasets html plotAndCalculateWeakAndStrongGenotype html plotAndClusterMatrix html plotAndSummarizeAllelicBiasTest html plotBinCounts html plotClusterAverage html plotFDRResults html plotGenotypesPerCluster html plotGenotypesPerSNP html plotRegionCounts html readGroups-methods html regions-methods html renameBins html renameDatasets html renameReadGroups html renameRegions html results html testForAllelicBiases html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'SNPhood' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'SNPhood' as SNPhood_1.12.0.zip * DONE (SNPhood) In R CMD INSTALL In R CMD INSTALL