Marcel Ramos
| Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019) |
| URL: https://git.bioconductor.org/packages/TCGAutils |
| Branch: RELEASE_3_8 |
| Last Commit: b8b085b |
| Last Changed Date: 2019-02-13 14:40:03 -0400 (Wed, 13 Feb 2019) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-13 11:29:16 -0400 (Sat, 13 Apr 2019).
| Package 1548/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| TCGAutils 1.2.2 Marcel Ramos
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | NA | |||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: TCGAutils |
| Version: 1.2.2 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/TCGAutils_1.2.2.tar.gz && rm -rf TCGAutils.buildbin-libdir && mkdir TCGAutils.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TCGAutils.buildbin-libdir TCGAutils_1.2.2.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL TCGAutils_1.2.2.zip && rm TCGAutils_1.2.2.tar.gz TCGAutils_1.2.2.zip |
| StartedAt: 2019-04-12 19:56:44 -0400 (Fri, 12 Apr 2019) |
| EndedAt: 2019-04-12 19:57:45 -0400 (Fri, 12 Apr 2019) |
| EllapsedTime: 60.7 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/TCGAutils_1.2.2.tar.gz && rm -rf TCGAutils.buildbin-libdir && mkdir TCGAutils.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=TCGAutils.buildbin-libdir TCGAutils_1.2.2.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL TCGAutils_1.2.2.zip && rm TCGAutils_1.2.2.tar.gz TCGAutils_1.2.2.zip
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install for i386
Warning in untar2(tarfile, files, list, exdir, restore_times) :
restoring symbolic link as a file copy
* installing *source* package 'TCGAutils' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'TCGAutils'
finding HTML links ... done
ID-translation html
TCGAbarcode html
TCGAbiospec html
TCGAsampleSelect html
TCGAutils-package html
finding level-2 HTML links ... done
builds html
clinicalNames html
curatedTCGAData-helpers html
diseaseCodes html
findGRangesCols html
generateMap html
getFileNames html
imputeAssay html
makeGRangesListFromCopyNumber html
makeGRangesListFromExonFiles html
makeSummarizedExperimentFromGISTIC html
mergeColData html
mirToRanges html
qreduceTCGA html
sampleTypes html
simplifyTCGA html
symbolsToRanges html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
Warning in untar2(tarfile, files, list, exdir, restore_times) :
restoring symbolic link as a file copy
* installing *source* package 'TCGAutils' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'TCGAutils' as TCGAutils_1.2.2.zip
* DONE (TCGAutils)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'TCGAutils' successfully unpacked and MD5 sums checked
In R CMD INSTALL