Back to Multiple platform build/check report for BioC 3.8 |
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This page was generated on 2019-04-16 11:53:05 -0400 (Tue, 16 Apr 2019).
Package 63/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
anota2seq 1.4.2 Christian Oertlin
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | [ OK ] | ![]() | ||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | ![]() |
Package: anota2seq |
Version: 1.4.2 |
Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:anota2seq.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings anota2seq_1.4.2.tar.gz |
StartedAt: 2019-04-15 22:12:53 -0400 (Mon, 15 Apr 2019) |
EndedAt: 2019-04-15 22:17:20 -0400 (Mon, 15 Apr 2019) |
EllapsedTime: 267.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: anota2seq.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:anota2seq.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings anota2seq_1.4.2.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.8-bioc/meat/anota2seq.Rcheck’ * using R version 3.5.3 (2019-03-11) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘anota2seq/DESCRIPTION’ ... OK * this is package ‘anota2seq’ version ‘1.4.2’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘anota2seq’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed anota2seqGetQualityControl 42.964 0.012 43.025 anota2seqGetResidOutlierTest 42.516 0.036 42.605 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
anota2seq.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL anota2seq ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’ * installing *source* package ‘anota2seq’ ... ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (anota2seq)
anota2seq.Rcheck/anota2seq-Ex.timings
name | user | system | elapsed | |
anota2seq-plots | 0.000 | 0.000 | 0.001 | |
anota2seqAnalyze | 1.592 | 0.028 | 1.623 | |
anota2seqDataSetFromMatrix | 0.244 | 0.000 | 0.248 | |
anota2seqGetContrasts | 0.836 | 0.004 | 0.845 | |
anota2seqGetCovariates | 0.844 | 0.004 | 0.850 | |
anota2seqGetDeltaData | 0.600 | 0.012 | 0.612 | |
anota2seqGetNormalizedData | 0.052 | 0.000 | 0.051 | |
anota2seqGetOutput | 0.624 | 0.004 | 0.629 | |
anota2seqGetQualityControl | 42.964 | 0.012 | 43.025 | |
anota2seqGetResidOutlierTest | 42.516 | 0.036 | 42.605 | |
anota2seqGetThresholds | 0.924 | 0.000 | 0.929 | |
anota2seqPerformQC | 0 | 0 | 0 | |
anota2seqRegModes | 1.648 | 0.012 | 1.660 | |
anota2seqResidOutlierTest | 0 | 0 | 0 | |
anota2seqRun | 1.476 | 0.008 | 1.487 | |
anota2seqSelSigGenes | 0.552 | 0.000 | 0.553 | |
anota2seq_data | 0.012 | 0.000 | 0.013 | |
show-Anota2seqDataSet-method | 0.22 | 0.00 | 0.22 | |