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BUILD report for cytofkit on tokay1

This page was generated on 2019-04-13 11:24:51 -0400 (Sat, 13 Apr 2019).

Package 362/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
cytofkit 1.14.0
Jinmiao Chen , Matthew Myint
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/cytofkit
Branch: RELEASE_3_8
Last Commit: 854ad07
Last Changed Date: 2018-10-30 11:41:56 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  ERROR  skipped 
tokay1 Windows Server 2012 R2 Standard / x64  OK [ ERROR ] skipped  skipped 
merida1 OS X 10.11.6 El Capitan / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: cytofkit
Version: 1.14.0
Command: chmod a+r cytofkit -R && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data cytofkit
StartedAt: 2019-04-12 22:20:15 -0400 (Fri, 12 Apr 2019)
EndedAt: 2019-04-12 22:21:42 -0400 (Fri, 12 Apr 2019)
EllapsedTime: 86.2 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   chmod a+r cytofkit -R && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data cytofkit
###
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* checking for file 'cytofkit/DESCRIPTION' ... OK
* preparing 'cytofkit':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: ggplot2
Loading required package: plyr
Run Rphenograph starts:
  -Input data of 100 rows and 52 columns
  -k is set to 30
Run Rphenograph DONE, took a total of 0.0699999999999985s.
Invalid Parameter - /figure-html
Warning in shell(paste(c(cmd, args), collapse = " ")) :
  'convert "cytofkit_example_files/figure-html/unnamed-chunk-11-1.png" -trim "cytofkit_example_files/figure-html/unnamed-chunk-11-1.png"' execution failed with error code 4
Invalid Parameter - /figure-html
Warning in shell(paste(c(cmd, args), collapse = " ")) :
  'convert "cytofkit_example_files/figure-html/unnamed-chunk-11-2.png" -trim "cytofkit_example_files/figure-html/unnamed-chunk-11-2.png"' execution failed with error code 4
Invalid Parameter - /figure-html
Warning in shell(paste(c(cmd, args), collapse = " ")) :
  'convert "cytofkit_example_files/figure-html/unnamed-chunk-12-1.png" -trim "cytofkit_example_files/figure-html/unnamed-chunk-12-1.png"' execution failed with error code 4
Invalid Parameter - /figure-html
Warning in shell(paste(c(cmd, args), collapse = " ")) :
  'convert "cytofkit_example_files/figure-html/unnamed-chunk-12-2.png" -trim "cytofkit_example_files/figure-html/unnamed-chunk-12-2.png"' execution failed with error code 4
Invalid Parameter - /figure-html
Warning in shell(paste(c(cmd, args), collapse = " ")) :
  'convert "cytofkit_example_files/figure-html/unnamed-chunk-13-1.png" -trim "cytofkit_example_files/figure-html/unnamed-chunk-13-1.png"' execution failed with error code 4
Invalid Parameter - /figure-html
Warning in shell(paste(c(cmd, args), collapse = " ")) :
  'convert "cytofkit_example_files/figure-html/unnamed-chunk-13-2.png" -trim "cytofkit_example_files/figure-html/unnamed-chunk-13-2.png"' execution failed with error code 4
Quitting from lines 207-228 (cytofkit_example.Rmd) 
Error: processing vignette 'cytofkit_example.Rmd' failed with diagnostics:
Discrete value supplied to continuous scale
Execution halted