Peng Ni
| Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019) |
| URL: https://git.bioconductor.org/packages/dSimer |
| Branch: RELEASE_3_8 |
| Last Commit: 78df868 |
| Last Changed Date: 2018-10-30 11:42:01 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-16 11:52:07 -0400 (Tue, 16 Apr 2019).
| Package 438/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| dSimer 1.8.0 Peng Ni
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | [ OK ] | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: dSimer |
| Version: 1.8.0 |
| Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:dSimer.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings dSimer_1.8.0.tar.gz |
| StartedAt: 2019-04-15 23:38:59 -0400 (Mon, 15 Apr 2019) |
| EndedAt: 2019-04-15 23:42:53 -0400 (Mon, 15 Apr 2019) |
| EllapsedTime: 234.0 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: dSimer.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:dSimer.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings dSimer_1.8.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.8-bioc/meat/dSimer.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘dSimer/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘dSimer’ version ‘1.8.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘dSimer’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 6.9Mb
sub-directories of 1Mb or more:
data 3.1Mb
libs 3.6Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
get_GOterm2GeneAssos 35.076 1.716 36.849
FunSim 19.120 0.024 19.171
plot_heatmap 18.744 0.124 18.886
plot_net 18.432 0.104 18.555
PSB 13.040 0.004 13.057
HypergeometricTest 12.824 0.040 12.874
x2y_conv2_y2x 6.776 0.004 6.783
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.8-bioc/meat/dSimer.Rcheck/00check.log’
for details.
dSimer.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL dSimer ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’ * installing *source* package ‘dSimer’ ... ** libs g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -c BOG.cpp -o BOG.o g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -c GO2GeneAssos.cpp -o GO2GeneAssos.o g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -c ICod.cpp -o ICod.o g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -c PSB.cpp -o PSB.o gcc -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -c R_dSimer_init.c -o R_dSimer_init.o g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -c RcppExports.cpp -o RcppExports.o g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I/usr/local/include -fpic -g -O2 -Wall -c Sun.cpp -o Sun.o g++ -shared -L/home/biocbuild/bbs-3.8-bioc/R/lib -L/usr/local/lib -o dSimer.so BOG.o GO2GeneAssos.o ICod.o PSB.o R_dSimer_init.o RcppExports.o Sun.o -L/home/biocbuild/bbs-3.8-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.8-bioc/R/library/dSimer/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (dSimer)
dSimer.Rcheck/dSimer-Ex.timings
| name | user | system | elapsed | |
| BOG | 4.936 | 0.048 | 4.993 | |
| CosineDFV | 0.220 | 0.004 | 0.222 | |
| FunSim | 19.120 | 0.024 | 19.171 | |
| HumanNet_sample | 0.024 | 0.004 | 0.029 | |
| HypergeometricTest | 12.824 | 0.040 | 12.874 | |
| ICod | 1.156 | 0.052 | 1.212 | |
| InformationContent | 0.108 | 0.044 | 0.155 | |
| LLSn2List | 0.100 | 0.004 | 0.103 | |
| Normalize | 0 | 0 | 0 | |
| PPI_HPRD | 0.156 | 0.008 | 0.162 | |
| PSB | 13.040 | 0.004 | 13.057 | |
| Separation | 4.708 | 0.132 | 4.846 | |
| Separation2Similarity | 0.000 | 0.000 | 0.001 | |
| Sun_annotation | 0.100 | 0.004 | 0.105 | |
| Sun_function | 0.004 | 0.000 | 0.002 | |
| Sun_topology | 0.252 | 0.040 | 0.295 | |
| d2g_fundo_entrezid | 0.080 | 0.040 | 0.124 | |
| d2g_fundo_symbol | 0.076 | 0.064 | 0.143 | |
| d2g_separation | 0.068 | 0.044 | 0.112 | |
| d2go_sample | 0.004 | 0.000 | 0.001 | |
| d2s_hsdn | 0.116 | 0.000 | 0.115 | |
| d2s_hsdn_sample | 0.004 | 0.000 | 0.006 | |
| get_GOterm2GeneAssos | 35.076 | 1.716 | 36.849 | |
| go2g_sample | 0.068 | 0.004 | 0.071 | |
| graphlet_sig_hprd | 0.092 | 0.004 | 0.098 | |
| interactome | 0.672 | 0.080 | 0.750 | |
| jaccardindex | 0.004 | 0.000 | 0.002 | |
| orbit_dependency_count | 0.000 | 0.000 | 0.002 | |
| plot_bipartite | 0.240 | 0.052 | 0.290 | |
| plot_heatmap | 18.744 | 0.124 | 18.886 | |
| plot_net | 18.432 | 0.104 | 18.555 | |
| plot_topo | 0.492 | 0.052 | 0.544 | |
| setWeight | 0.000 | 0.000 | 0.001 | |
| weight | 0 | 0 | 0 | |
| x2y_conv2_y2x | 6.776 | 0.004 | 6.783 | |
| x2y_df2list | 0.004 | 0.000 | 0.004 | |