Jobst Landgrebe
| Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019) |
| URL: https://git.bioconductor.org/packages/daMA |
| Branch: RELEASE_3_8 |
| Last Commit: 3015ade |
| Last Changed Date: 2018-10-30 11:41:41 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-13 11:19:16 -0400 (Sat, 13 Apr 2019).
| Package 367/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| daMA 1.54.0 Jobst Landgrebe
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: daMA |
| Version: 1.54.0 |
| Command: C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:daMA.install-out.txt --library=C:\Users\biocbuild\bbs-3.8-bioc\R\library --no-vignettes --timings daMA_1.54.0.tar.gz |
| StartedAt: 2019-04-13 01:37:31 -0400 (Sat, 13 Apr 2019) |
| EndedAt: 2019-04-13 01:38:58 -0400 (Sat, 13 Apr 2019) |
| EllapsedTime: 86.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: daMA.Rcheck |
| Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:daMA.install-out.txt --library=C:\Users\biocbuild\bbs-3.8-bioc\R\library --no-vignettes --timings daMA_1.54.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.8-bioc/meat/daMA.Rcheck' * using R version 3.5.3 (2019-03-11) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'daMA/DESCRIPTION' ... OK * this is package 'daMA' version '1.54.0' * checking package namespace information ... OK * checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib: cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES' OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'daMA' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking DESCRIPTION meta-information ... NOTE Malformed Description field: should contain one or more complete sentences. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE prepare_Rd: analyseMA.Rd:70: Dropping empty section \note prepare_Rd: analyseMA.Rd:72: Dropping empty section \seealso prepare_Rd: cmat.Rd:13-14: Dropping empty section \format prepare_Rd: cmat.Rd:15-16: Dropping empty section \details prepare_Rd: cmat.Rd:17-19: Dropping empty section \source prepare_Rd: cmatB.AB.Rd:13-14: Dropping empty section \format prepare_Rd: cmatB.AB.Rd:15-16: Dropping empty section \details prepare_Rd: cmatB.AB.Rd:17-18: Dropping empty section \source prepare_Rd: core.Rd:42: Dropping empty section \keyword prepare_Rd: core.Rd:29-30: Dropping empty section \details prepare_Rd: core.Rd:31-32: Dropping empty section \value prepare_Rd: core.Rd:38: Dropping empty section \note prepare_Rd: core.Rd:40: Dropping empty section \seealso prepare_Rd: core.Rd:41: Dropping empty section \examples prepare_Rd: data.3x2.Rd:15-16: Dropping empty section \details prepare_Rd: data.3x2.Rd:21-22: Dropping empty section \references prepare_Rd: designMA.Rd:66: Dropping empty section \note prepare_Rd: designMA.Rd:68: Dropping empty section \seealso prepare_Rd: id.3x2.Rd:14-15: Dropping empty section \details prepare_Rd: id.3x2.Rd:16-17: Dropping empty section \source prepare_Rd: id.3x2.Rd:18-19: Dropping empty section \references * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See 'C:/Users/biocbuild/bbs-3.8-bioc/meat/daMA.Rcheck/00check.log' for details.
daMA.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/daMA_1.54.0.tar.gz && rm -rf daMA.buildbin-libdir && mkdir daMA.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=daMA.buildbin-libdir daMA_1.54.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL daMA_1.54.0.zip && rm daMA_1.54.0.tar.gz daMA_1.54.0.zip
###
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install for i386
* installing *source* package 'daMA' ...
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'daMA'
finding HTML links ... done
analyseMA html
cinfo html
cinfoB.AB html
cmat html
cmatB.AB html
core html
data.3x2 html
designMA html
designs.basic html
designs.composite html
id.3x2 html
** building package indices
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'daMA' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'daMA' as daMA_1.54.0.zip
* DONE (daMA)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'daMA' successfully unpacked and MD5 sums checked
In R CMD INSTALL
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daMA.Rcheck/examples_i386/daMA-Ex.timings
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daMA.Rcheck/examples_x64/daMA-Ex.timings
|