Back to Multiple platform build/check report for BioC 3.8 |
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This page was generated on 2019-04-16 11:57:53 -0400 (Tue, 16 Apr 2019).
Package 485/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
erccdashboard 1.16.1 Sarah Munro
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK |
Package: erccdashboard |
Version: 1.16.1 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:erccdashboard.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings erccdashboard_1.16.1.tar.gz |
StartedAt: 2019-04-15 23:48:18 -0400 (Mon, 15 Apr 2019) |
EndedAt: 2019-04-15 23:49:27 -0400 (Mon, 15 Apr 2019) |
EllapsedTime: 69.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: erccdashboard.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:erccdashboard.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings erccdashboard_1.16.1.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.8-bioc/meat/erccdashboard.Rcheck’ * using R version 3.5.3 (2019-03-11) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘erccdashboard/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘erccdashboard’ version ‘1.16.1’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘erccdashboard’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE dynRangePlot: no visible binding for global variable ‘value’ dynRangePlot: no visible binding for global variable ‘Rep’ saveERCCPlots: no visible global function definition for ‘par’ testDECount: no visible binding for global variable ‘Atrend’ testDECount: no visible binding for global variable ‘Dispersion’ testDECount: no visible binding for global variable ‘Ratio’ Undefined global functions or variables: Atrend Dispersion Ratio Rep par value Consider adding importFrom("graphics", "par") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed estLODR 8.554 0.062 8.724 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See ‘/Users/biocbuild/bbs-3.8-bioc/meat/erccdashboard.Rcheck/00check.log’ for details.
erccdashboard.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL erccdashboard ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’ * installing *source* package ‘erccdashboard’ ... ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (erccdashboard)
erccdashboard.Rcheck/erccdashboard-Ex.timings
name | user | system | elapsed | |
ERCC | 0.004 | 0.001 | 0.005 | |
SEQC.Example | 0.001 | 0.001 | 0.002 | |
annotLODR | 1.787 | 0.096 | 1.920 | |
dynRangePlot | 2.105 | 0.051 | 2.187 | |
erccROC | 1.654 | 0.046 | 1.723 | |
estLODR | 8.554 | 0.062 | 8.724 | |
est_r_m | 1.156 | 0.020 | 1.188 | |
geneExprTest | 1.171 | 0.031 | 1.210 | |
initDat | 0.148 | 0.015 | 0.163 | |
maSignal | 4.243 | 0.054 | 4.335 | |
runDashboard | 0 | 0 | 0 | |
saveERCCPlots | 0 | 0 | 0 | |