Bioconductor Package Maintainer
| Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019) |
| URL: https://git.bioconductor.org/packages/gpls |
| Branch: RELEASE_3_8 |
| Last Commit: 6197171 |
| Last Changed Date: 2018-10-30 11:41:41 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-16 11:47:50 -0400 (Tue, 16 Apr 2019).
| Package 674/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| gpls 1.54.0 Bioconductor Package Maintainer
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | [ WARNINGS ] | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: gpls |
| Version: 1.54.0 |
| Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:gpls.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings gpls_1.54.0.tar.gz |
| StartedAt: 2019-04-16 00:24:41 -0400 (Tue, 16 Apr 2019) |
| EndedAt: 2019-04-16 00:25:01 -0400 (Tue, 16 Apr 2019) |
| EllapsedTime: 20.0 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: gpls.Rcheck |
| Warnings: 1 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:gpls.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings gpls_1.54.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.8-bioc/meat/gpls.Rcheck’ * using R version 3.5.3 (2019-03-11) * using platform: x86_64-pc-linux-gnu (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘gpls/DESCRIPTION’ ... OK * this is package ‘gpls’ version ‘1.54.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘gpls’ can be installed ... WARNING Found the following significant warnings: Note: break used in wrong context: no loop is visible See ‘/home/biocbuild/bbs-3.8-bioc/meat/gpls.Rcheck/00install.out’ for details. Information on the location(s) of code generating the ‘Note’s can be obtained by re-running with environment variable R_KEEP_PKG_SOURCE set to ‘yes’. * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE prepare_Rd: glpls1a.Rd:26-28: Dropping empty section \details prepare_Rd: glpls1a.Rd:47: Dropping empty section \note prepare_Rd: glpls1a.cv.error.Rd:24-26: Dropping empty section \details prepare_Rd: glpls1a.cv.error.Rd:42: Dropping empty section \note prepare_Rd: glpls1a.logit.all.Rd:28-30: Dropping empty section \details prepare_Rd: glpls1a.logit.all.Rd:45: Dropping empty section \note prepare_Rd: glpls1a.mlogit.Rd:27-29: Dropping empty section \details prepare_Rd: glpls1a.mlogit.Rd:47: Dropping empty section \note prepare_Rd: glpls1a.mlogit.cv.error.Rd:24: Dropping empty section \details prepare_Rd: glpls1a.mlogit.cv.error.Rd:40: Dropping empty section \note prepare_Rd: glpls1a.train.test.error.Rd:27-29: Dropping empty section \details prepare_Rd: glpls1a.train.test.error.Rd:46: Dropping empty section \note * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 WARNING, 1 NOTE See ‘/home/biocbuild/bbs-3.8-bioc/meat/gpls.Rcheck/00check.log’ for details.
gpls.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL gpls ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’ * installing *source* package ‘gpls’ ... ** R ** byte-compile and prepare package for lazy loading Note: break used in wrong context: no loop is visible Note: break used in wrong context: no loop is visible ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (gpls)
gpls.Rcheck/gpls-Ex.timings
| name | user | system | elapsed | |
| glpls1a | 0.116 | 0.000 | 0.116 | |
| glpls1a.cv.error | 0.268 | 0.000 | 0.271 | |
| glpls1a.logit.all | 0.084 | 0.000 | 0.087 | |
| glpls1a.mlogit | 0.168 | 0.000 | 0.171 | |
| glpls1a.mlogit.cv.error | 3.516 | 0.004 | 3.535 | |
| glpls1a.train.test.error | 0.020 | 0.000 | 0.021 | |
| gpls | 0.096 | 0.000 | 0.096 | |
| predict.gpls | 0.096 | 0.008 | 0.113 | |