Back to Multiple platform build/check report for BioC 3.8 |
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This page was generated on 2019-04-16 11:54:11 -0400 (Tue, 16 Apr 2019).
Package 732/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
hopach 2.42.0 Katherine S. Pollard
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK |
Package: hopach |
Version: 2.42.0 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:hopach.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings hopach_2.42.0.tar.gz |
StartedAt: 2019-04-16 00:36:03 -0400 (Tue, 16 Apr 2019) |
EndedAt: 2019-04-16 00:37:33 -0400 (Tue, 16 Apr 2019) |
EllapsedTime: 89.3 seconds |
RetCode: 0 |
Status: OK |
CheckDir: hopach.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:hopach.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings hopach_2.42.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.8-bioc/meat/hopach.Rcheck’ * using R version 3.5.3 (2019-03-11) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘hopach/DESCRIPTION’ ... OK * this is package ‘hopach’ version ‘2.42.0’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘hopach’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking compiled code ... NOTE Note: information on .o files is not available * checking sizes of PDF files under ‘inst/doc’ ... NOTE ‘qpdf’ made some significant size reductions: compacted ‘hopach.pdf’ from 2146Kb to 343Kb consider running tools::compactPDF() on these files * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed boot2fuzzy 11.391 0.057 11.551 bootstrap 10.940 0.036 11.057 bootplot 10.713 0.038 10.837 makeoutput 10.456 0.034 10.579 * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 2 NOTEs See ‘/Users/biocbuild/bbs-3.8-bioc/meat/hopach.Rcheck/00check.log’ for details.
hopach.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL hopach ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’ * installing *source* package ‘hopach’ ... ** libs clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c Rdistances.c -o Rdistances.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c hdist.c -o hdist.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o hopach.so Rdistances.o hdist.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Library/Frameworks/R.framework/Versions/3.5/Resources/library/hopach/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading Creating a generic function from function ‘as.hdist’ in package ‘hopach’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (hopach)
hopach.Rcheck/hopach-Ex.timings
name | user | system | elapsed | |
boot2fuzzy | 11.391 | 0.057 | 11.551 | |
bootplot | 10.713 | 0.038 | 10.837 | |
bootstrap | 10.940 | 0.036 | 11.057 | |
correlationordering | 0.040 | 0.001 | 0.042 | |
disscosangle | 0.002 | 0.000 | 0.002 | |
distancematrix | 0.008 | 0.001 | 0.009 | |
dplot | 0.072 | 0.001 | 0.074 | |
hdist-class | 0.017 | 0.002 | 0.020 | |
hopach | 0.522 | 0.001 | 0.529 | |
hopach.internal | 0 | 0 | 0 | |
hopach2tree | 0.320 | 0.003 | 0.324 | |
labelstomss | 0.264 | 0.001 | 0.265 | |
makeoutput | 10.456 | 0.034 | 10.579 | |
prune | 1.805 | 0.005 | 1.818 | |