Back to Multiple platform build/check report for BioC 3.8 |
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This page was generated on 2019-04-13 11:22:09 -0400 (Sat, 13 Apr 2019).
Package 743/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
iASeq 1.26.1 Yingying Wei
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | |||||||
tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK |
Package: iASeq |
Version: 1.26.1 |
Command: C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:iASeq.install-out.txt --library=C:\Users\biocbuild\bbs-3.8-bioc\R\library --no-vignettes --timings iASeq_1.26.1.tar.gz |
StartedAt: 2019-04-13 03:06:04 -0400 (Sat, 13 Apr 2019) |
EndedAt: 2019-04-13 03:07:33 -0400 (Sat, 13 Apr 2019) |
EllapsedTime: 89.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: iASeq.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:iASeq.install-out.txt --library=C:\Users\biocbuild\bbs-3.8-bioc\R\library --no-vignettes --timings iASeq_1.26.1.tar.gz ### ############################################################################## ############################################################################## * using log directory 'C:/Users/biocbuild/bbs-3.8-bioc/meat/iASeq.Rcheck' * using R version 3.5.3 (2019-03-11) * using platform: x86_64-w64-mingw32 (64-bit) * using session charset: ISO8859-1 * using option '--no-vignettes' * checking for file 'iASeq/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'iASeq' version '1.26.1' * checking package namespace information ... OK * checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib: cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES' OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'iASeq' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * loading checks for arch 'i386' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * loading checks for arch 'x64' ** checking whether the package can be loaded ... OK ** checking whether the package can be loaded with stated dependencies ... OK ** checking whether the package can be unloaded cleanly ... OK ** checking whether the namespace can be loaded with stated dependencies ... OK ** checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... NOTE ASErawfit: no visible global function definition for 'var' fdown.loglike: no visible global function definition for 'pbeta' fup.loglike: no visible global function definition for 'pbeta' iASeqmotiffit: no visible global function definition for 'runif' iASeqmotiffit: no visible global function definition for 'var' plotBIC: no visible global function definition for 'lines' plotMotif: no visible global function definition for 'image' singleEMfit: no visible global function definition for 'var' Undefined global functions or variables: image lines pbeta runif var Consider adding importFrom("graphics", "image", "lines") importFrom("stats", "pbeta", "runif", "var") to your NAMESPACE file. * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking files in 'vignettes' ... OK * checking examples ... ** running examples for arch 'i386' ... OK ** running examples for arch 'x64' ... OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in 'inst/doc' ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 1 NOTE See 'C:/Users/biocbuild/bbs-3.8-bioc/meat/iASeq.Rcheck/00check.log' for details.
iASeq.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/iASeq_1.26.1.tar.gz && rm -rf iASeq.buildbin-libdir && mkdir iASeq.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=iASeq.buildbin-libdir iASeq_1.26.1.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL iASeq_1.26.1.zip && rm iASeq_1.26.1.tar.gz iASeq_1.26.1.zip ### ############################################################################## ############################################################################## % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0 100 34473 100 34473 0 0 765k 0 --:--:-- --:--:-- --:--:-- 841k install for i386 * installing *source* package 'iASeq' ... ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices converting help for package 'iASeq' finding HTML links ... done ASErawfit html iASeq-internal html iASeq-package html iASeqmotif html plotBIC html plotMotif html sampleASE html singleEMfit html ** building package indices ** installing vignettes ** testing if installed package can be loaded In R CMD INSTALL install for x64 * installing *source* package 'iASeq' ... ** testing if installed package can be loaded * MD5 sums packaged installation of 'iASeq' as iASeq_1.26.1.zip * DONE (iASeq) In R CMD INSTALL In R CMD INSTALL * installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library' package 'iASeq' successfully unpacked and MD5 sums checked In R CMD INSTALL
iASeq.Rcheck/examples_i386/iASeq-Ex.timings
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iASeq.Rcheck/examples_x64/iASeq-Ex.timings
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