Back to Multiple platform build/check report for BioC 3.8 |
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This page was generated on 2019-04-16 11:57:45 -0400 (Tue, 16 Apr 2019).
Package 1097/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
oposSOM 2.0.0 Henry Loeffler-Wirth
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | WARNINGS | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | ERROR | [ OK ] |
Package: oposSOM |
Version: 2.0.0 |
Command: rm -rf oposSOM.buildbin-libdir && mkdir oposSOM.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh oposSOM_2.0.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R oposSOM.buildbin-libdir |
StartedAt: 2019-04-16 04:29:05 -0400 (Tue, 16 Apr 2019) |
EndedAt: 2019-04-16 04:29:50 -0400 (Tue, 16 Apr 2019) |
EllapsedTime: 44.1 seconds |
RetCode: 0 |
Status: OK |
PackageFile: oposSOM_2.0.0.tgz |
PackageFileSize: 4.077 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf oposSOM.buildbin-libdir && mkdir oposSOM.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh oposSOM_2.0.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R oposSOM.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=oposSOM.buildbin-libdir oposSOM_2.0.0.tar.gz' >>>>>>> * installing *source* package ‘oposSOM’ ... ** libs clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppParallel/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c DeltaMatrix.cpp -o DeltaMatrix.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppParallel/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c DistanceCalculator.cpp -o DistanceCalculator.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppParallel/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c NeighborhoodMatrix.cpp -o NeighborhoodMatrix.o clang++ -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/RcppParallel/include" -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include -fPIC -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o clang++ -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o oposSOM.so DeltaMatrix.o DistanceCalculator.o NeighborhoodMatrix.o RcppExports.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.8-bioc/meat/oposSOM.buildbin-libdir/oposSOM/libs ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (oposSOM) >>>>>>> >>>>>>> FIXING LINKS FOR oposSOM.buildbin-libdir/oposSOM/libs//oposSOM.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgcc_s.1.dylib" "oposSOM.buildbin-libdir/oposSOM/libs//oposSOM.so" install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "oposSOM.buildbin-libdir/oposSOM/libs//oposSOM.so" install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.5.2.dylib" "oposSOM.buildbin-libdir/oposSOM/libs//oposSOM.so" install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.dylib" "oposSOM.buildbin-libdir/oposSOM/libs//oposSOM.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "oposSOM.buildbin-libdir/oposSOM/libs//oposSOM.so"