Back to Multiple platform build/check report for BioC 3.8 |
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This page was generated on 2019-04-16 11:54:58 -0400 (Tue, 16 Apr 2019).
Package 1224/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
qpgraph 2.16.0 Robert Castelo
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | [ OK ] |
Package: qpgraph |
Version: 2.16.0 |
Command: rm -rf qpgraph.buildbin-libdir && mkdir qpgraph.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh qpgraph_2.16.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R qpgraph.buildbin-libdir |
StartedAt: 2019-04-16 04:34:57 -0400 (Tue, 16 Apr 2019) |
EndedAt: 2019-04-16 04:35:36 -0400 (Tue, 16 Apr 2019) |
EllapsedTime: 39.5 seconds |
RetCode: 0 |
Status: OK |
PackageFile: qpgraph_2.16.0.tgz |
PackageFileSize: 3.97 MiB |
############################################################################## ############################################################################## ### ### Running command: ### ### rm -rf qpgraph.buildbin-libdir && mkdir qpgraph.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh qpgraph_2.16.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R qpgraph.buildbin-libdir ### ############################################################################## ############################################################################## >>>>>>> >>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=qpgraph.buildbin-libdir qpgraph_2.16.0.tar.gz' >>>>>>> * installing *source* package ‘qpgraph’ ... checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ANSI C... none needed checking build system type... i686-apple-darwin15.6.0 checking host system type... i686-apple-darwin15.6.0 configure: creating ./config.status config.status: creating src/Makevars ** libs clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -Wall -g -O2 -Wall -pedantic -fPIC -Wall -g -O2 -c cliquer.c -o cliquer.o cliquer.c:229:5: warning: implicit declaration of function 'R_ProcessEvents' is invalid in C99 [-Wimplicit-function-declaration] R_ProcessEvents(); ^ 1 warning generated. clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -Wall -g -O2 -Wall -pedantic -fPIC -Wall -g -O2 -c graph.c -o graph.o clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -Wall -g -O2 -Wall -pedantic -fPIC -Wall -g -O2 -c qpgraph.c -o qpgraph.o qpgraph.c:5851:19: warning: expression result unused [-Wunused-value] int i = edges[k, 0]; ^ qpgraph.c:5852:19: warning: expression result unused [-Wunused-value] int j = edges[k, 1]; ^ 2 warnings generated. clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -I/usr/local/include -Wall -g -O2 -Wall -pedantic -fPIC -Wall -g -O2 -c reorder.c -o reorder.o clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o qpgraph.so cliquer.o graph.o qpgraph.o reorder.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation installing to /Users/biocbuild/bbs-3.8-bioc/meat/qpgraph.buildbin-libdir/qpgraph/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading No methods found in package ‘GenomicRanges’ for request: ‘c’ when loading ‘qpgraph’ Creating a generic function for ‘det’ from package ‘Matrix’ in package ‘qpgraph’ ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded No methods found in package ‘GenomicRanges’ for request: ‘c’ when loading ‘qpgraph’ * DONE (qpgraph) >>>>>>> >>>>>>> FIXING LINKS FOR qpgraph.buildbin-libdir/qpgraph/libs//qpgraph.so >>>>>>> install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgcc_s.1.dylib" "qpgraph.buildbin-libdir/qpgraph/libs//qpgraph.so" install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "qpgraph.buildbin-libdir/qpgraph/libs//qpgraph.so" install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.5.2.dylib" "qpgraph.buildbin-libdir/qpgraph/libs//qpgraph.so" install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.dylib" "qpgraph.buildbin-libdir/qpgraph/libs//qpgraph.so" install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "qpgraph.buildbin-libdir/qpgraph/libs//qpgraph.so" install_name_tool -change "/usr/local/gfortran/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "qpgraph.buildbin-libdir/qpgraph/libs//qpgraph.so" install_name_tool -change "/usr/local/gfortran/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "qpgraph.buildbin-libdir/qpgraph/libs//qpgraph.so"