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BUILD BIN report for qpgraph on merida1

This page was generated on 2019-04-16 11:54:58 -0400 (Tue, 16 Apr 2019).

Package 1224/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
qpgraph 2.16.0
Robert Castelo
Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019)
URL: https://git.bioconductor.org/packages/qpgraph
Branch: RELEASE_3_8
Last Commit: c128a5f
Last Changed Date: 2018-10-30 11:41:45 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: qpgraph
Version: 2.16.0
Command: rm -rf qpgraph.buildbin-libdir && mkdir qpgraph.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh qpgraph_2.16.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R qpgraph.buildbin-libdir
StartedAt: 2019-04-16 04:34:57 -0400 (Tue, 16 Apr 2019)
EndedAt: 2019-04-16 04:35:36 -0400 (Tue, 16 Apr 2019)
EllapsedTime: 39.5 seconds
RetCode: 0
Status:  OK 
PackageFile: qpgraph_2.16.0.tgz
PackageFileSize: 3.97 MiB

Command output

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###
### Running command:
###
###   rm -rf qpgraph.buildbin-libdir && mkdir qpgraph.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh qpgraph_2.16.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R qpgraph.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=qpgraph.buildbin-libdir qpgraph_2.16.0.tar.gz'
>>>>>>> 

* installing *source* package ‘qpgraph’ ...
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking build system type... i686-apple-darwin15.6.0
checking host system type... i686-apple-darwin15.6.0
configure: creating ./config.status
config.status: creating src/Makevars
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include  -I/usr/local/include  -Wall -g -O2 -Wall -pedantic -fPIC  -Wall -g -O2  -c cliquer.c -o cliquer.o
cliquer.c:229:5: warning: implicit declaration of function 'R_ProcessEvents' is invalid in C99 [-Wimplicit-function-declaration]
    R_ProcessEvents();
    ^
1 warning generated.
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include  -I/usr/local/include  -Wall -g -O2 -Wall -pedantic -fPIC  -Wall -g -O2  -c graph.c -o graph.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include  -I/usr/local/include  -Wall -g -O2 -Wall -pedantic -fPIC  -Wall -g -O2  -c qpgraph.c -o qpgraph.o
qpgraph.c:5851:19: warning: expression result unused [-Wunused-value]
    int i = edges[k, 0];
                  ^
qpgraph.c:5852:19: warning: expression result unused [-Wunused-value]
    int j = edges[k, 1];
                  ^
2 warnings generated.
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include  -I/usr/local/include  -Wall -g -O2 -Wall -pedantic -fPIC  -Wall -g -O2  -c reorder.c -o reorder.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o qpgraph.so cliquer.o graph.o qpgraph.o reorder.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.8-bioc/meat/qpgraph.buildbin-libdir/qpgraph/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
No methods found in package ‘GenomicRanges’ for request: ‘c’ when loading ‘qpgraph’
Creating a generic function for ‘det’ from package ‘Matrix’ in package ‘qpgraph’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
No methods found in package ‘GenomicRanges’ for request: ‘c’ when loading ‘qpgraph’
* DONE (qpgraph)


>>>>>>> 
>>>>>>> FIXING LINKS FOR qpgraph.buildbin-libdir/qpgraph/libs//qpgraph.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgcc_s.1.dylib" "qpgraph.buildbin-libdir/qpgraph/libs//qpgraph.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "qpgraph.buildbin-libdir/qpgraph/libs//qpgraph.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.5.2.dylib" "qpgraph.buildbin-libdir/qpgraph/libs//qpgraph.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.dylib" "qpgraph.buildbin-libdir/qpgraph/libs//qpgraph.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "qpgraph.buildbin-libdir/qpgraph/libs//qpgraph.so"
install_name_tool -change "/usr/local/gfortran/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "qpgraph.buildbin-libdir/qpgraph/libs//qpgraph.so"
install_name_tool -change "/usr/local/gfortran/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "qpgraph.buildbin-libdir/qpgraph/libs//qpgraph.so"