Back to Multiple platform build/check report for BioC 3.8
ABCDEFGHIJKLMNOPQ[R]STUVWXYZ

INSTALL report for recount on tokay1

This page was generated on 2019-04-13 11:26:57 -0400 (Sat, 13 Apr 2019).

Package 1280/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
recount 1.8.2
Leonardo Collado-Torres
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/recount
Branch: RELEASE_3_8
Last Commit: ecd06f4
Last Changed Date: 2019-02-14 11:52:47 -0400 (Thu, 14 Feb 2019)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] ERROR  skipped  skipped 
merida1 OS X 10.11.6 El Capitan / x86_64  OK  ERROR  skipped  skipped 

Summary

Package: recount
Version: 1.8.2
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/recount_1.8.2.tar.gz && rm -rf recount.buildbin-libdir && mkdir recount.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=recount.buildbin-libdir recount_1.8.2.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL recount_1.8.2.zip && rm recount_1.8.2.tar.gz recount_1.8.2.zip
StartedAt: 2019-04-12 20:30:03 -0400 (Fri, 12 Apr 2019)
EndedAt: 2019-04-12 20:31:06 -0400 (Fri, 12 Apr 2019)
EllapsedTime: 62.7 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/recount_1.8.2.tar.gz && rm -rf recount.buildbin-libdir && mkdir recount.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=recount.buildbin-libdir recount_1.8.2.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL recount_1.8.2.zip && rm recount_1.8.2.tar.gz recount_1.8.2.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 5761k  100 5761k    0     0  60.7M      0 --:--:-- --:--:-- --:--:-- 63.2M

install for i386

* installing *source* package 'recount' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'recount'
    finding HTML links ... done
    abstract_search                         html  
    add_metadata                            html  
    add_predictions                         html  
    all_metadata                            html  
    browse_study                            html  
    coverage_matrix                         html  
    download_study                          html  
    expressed_regions                       html  
    find_geo                                html  
    geo_characteristics                     html  
    geo_info                                html  
    getRPKM                                 html  
    read_counts                             html  
    recount-package                         html  
    recount_abstract                        html  
    recount_exons                           html  
    recount_genes                           html  
    recount_url                             html  
    reproduce_ranges                        html  
    rse_gene_SRP009615                      html  
    scale_counts                            html  
    snaptron_query                          html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'recount' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'recount' as recount_1.8.2.zip
* DONE (recount)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'recount' successfully unpacked and MD5 sums checked
In R CMD INSTALL