Back to Multiple platform build/check report for BioC 3.8 |
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This page was generated on 2019-04-16 12:00:06 -0400 (Tue, 16 Apr 2019).
Package 1288/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
regsplice 1.8.1 Lukas M. Weber
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | [ OK ] | OK |
Package: regsplice |
Version: 1.8.1 |
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:regsplice.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings regsplice_1.8.1.tar.gz |
StartedAt: 2019-04-16 02:17:05 -0400 (Tue, 16 Apr 2019) |
EndedAt: 2019-04-16 02:21:24 -0400 (Tue, 16 Apr 2019) |
EllapsedTime: 259.1 seconds |
RetCode: 0 |
Status: OK |
CheckDir: regsplice.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --install=check:regsplice.install-out.txt --library=/Library/Frameworks/R.framework/Versions/Current/Resources/library --no-vignettes --timings regsplice_1.8.1.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.8-bioc/meat/regsplice.Rcheck’ * using R version 3.5.3 (2019-03-11) * using platform: x86_64-apple-darwin15.6.0 (64-bit) * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘regsplice/DESCRIPTION’ ... OK * this is package ‘regsplice’ version ‘1.8.1’ * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘regsplice’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking sizes of PDF files under ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU or elapsed time > 5s user system elapsed LRTests 19.725 0.345 20.376 fitRegMultiple 19.463 0.222 20.086 summaryTable 15.957 0.164 16.753 regsplice 15.931 0.154 16.493 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘testthat.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes in ‘inst/doc’ ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
regsplice.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL regsplice ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’ * installing *source* package ‘regsplice’ ... ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (regsplice)
regsplice.Rcheck/tests/testthat.Rout
R version 3.5.3 (2019-03-11) -- "Great Truth" Copyright (C) 2019 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin15.6.0 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > library(testthat) > library(regsplice) > > test_check("regsplice") ══ testthat results ═══════════════════════════════════════════════════════════ OK: 95 SKIPPED: 0 FAILED: 0 > > proc.time() user system elapsed 31.857 0.749 33.337
regsplice.Rcheck/regsplice-Ex.timings
name | user | system | elapsed | |
LRTests | 19.725 | 0.345 | 20.376 | |
RegspliceData | 0.343 | 0.006 | 0.350 | |
RegspliceResults | 0.003 | 0.001 | 0.004 | |
createDesignMatrix | 0.004 | 0.000 | 0.003 | |
filterLowCounts | 0.126 | 0.002 | 0.129 | |
filterZeros | 0.097 | 0.003 | 0.101 | |
fitRegMultiple | 19.463 | 0.222 | 20.086 | |
initializeResults | 0.211 | 0.004 | 0.219 | |
regsplice | 15.931 | 0.154 | 16.493 | |
runNormalization | 0.136 | 0.003 | 0.140 | |
runVoom | 0.202 | 0.002 | 0.204 | |
summaryTable | 15.957 | 0.164 | 16.753 | |