Package: rgsepd

Version: 1.14.1

Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:rgsepd.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings rgsepd_1.14.1.tar.gz

StartedAt: 2019-04-16 02:37:03 -0400 (Tue, 16 Apr 2019)

EndedAt: 2019-04-16 02:45:12 -0400 (Tue, 16 Apr 2019)

EllapsedTime: 489.3 seconds

RetCode: 0

Status:  OK

CheckDir: rgsepd.Rcheck

Warnings: 0

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### Running command:
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###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:rgsepd.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings rgsepd_1.14.1.tar.gz
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* using log directory ‘/home/biocbuild/bbs-3.8-bioc/meat/rgsepd.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘rgsepd/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘rgsepd’ version ‘1.14.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘rgsepd’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                    user system elapsed
GSEPD_DEGHeatmap 126.728  1.596 138.284
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

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### Running command:
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###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL rgsepd
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* installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’
* installing *source* package ‘rgsepd’ ...
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
'select()' returned 1:1 mapping between keys and columns
'select()' returned 1:1 mapping between keys and columns
* DONE (rgsepd)

name	user	system	elapsed
DisplayName	0.004	0.000	0.004
GSEPD_ChangeConditions	0.464	0.000	0.462
GSEPD_ChangeOutput	0.340	0.000	0.339
GSEPD_DEGHeatmap	126.728	1.596	138.284
GSEPD_Export_DESeq	0.408	0.000	0.411
GSEPD_Heatmap	2.296	0.008	2.308
GSEPD_INIT	0.496	0.004	0.506
GSEPD_PCA_Plot	2.028	0.000	2.027
GSEPD_PCA_Spec	1.764	0.000	1.767
GSEPD_Process	0.272	0.000	0.274
GSEPD_ProcessAll	0.436	0.004	0.444
GSEPD_PullDEG	2.412	0.004	2.417
IlluminaBodymap	0.472	0.004	0.482
IlluminaBodymapMeta	0.012	0.000	0.012
Name_to_RefSeq	0.000	0.000	0.001
rgsepd-package	0.484	0.000	0.487