Back to Multiple platform build/check report for BioC 3.8 |
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This page was generated on 2019-04-16 11:51:41 -0400 (Tue, 16 Apr 2019).
Package 1394/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
scde 2.10.1 Jean Fan
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | [ OK ] | OK | WARNINGS | |||||||
merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK |
Package: scde |
Version: 2.10.1 |
Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL scde |
StartedAt: 2019-04-15 18:33:01 -0400 (Mon, 15 Apr 2019) |
EndedAt: 2019-04-15 18:33:58 -0400 (Mon, 15 Apr 2019) |
EllapsedTime: 57.0 seconds |
RetCode: 0 |
Status: OK |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL scde ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’ * installing *source* package ‘scde’ ... ** libs g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.8-bioc/R/library/RcppArmadillo/include" -I/usr/local/include -fpic -g -O2 -Wall -c bwpca.cpp -o bwpca.o In file included from /home/biocbuild/bbs-3.8-bioc/R/library/RcppArmadillo/include/armadillo:54:0, from /home/biocbuild/bbs-3.8-bioc/R/library/RcppArmadillo/include/RcppArmadilloForward.h:46, from /home/biocbuild/bbs-3.8-bioc/R/library/RcppArmadillo/include/RcppArmadillo.h:31, from bwpca.h:4, from bwpca.cpp:1: /home/biocbuild/bbs-3.8-bioc/R/library/RcppArmadillo/include/armadillo_bits/compiler_setup.hpp:514:108: note: #pragma message: NOTE: suggest to enable C++14 mode for faster code; add -std=c++14 to compiler flags #pragma message ("NOTE: suggest to enable C++14 mode for faster code; add -std=c++14 to compiler flags") ^ bwpca.cpp: In function ‘void set_random_matrix(arma::mat&, arma::mat&)’: bwpca.cpp:23:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int j=0;j<target.n_rows;j++) { ^ bwpca.cpp:27:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int i=0;i<target.n_cols;i++) { ^ bwpca.cpp:30:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int j=0;j<target.n_rows;j++) { ^ bwpca.cpp: In function ‘void set_random_matrices(arma::mat&, arma::mat&, arma::mat&, arma::mat&)’: bwpca.cpp:40:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int j=0;j<target1.n_rows;j++) { ^ bwpca.cpp:44:18: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int i=0;i<target1.n_cols;i++) { ^ bwpca.cpp:47:22: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] for(int j=0;j<target1.n_rows;j++) { ^ g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.8-bioc/R/library/RcppArmadillo/include" -I/usr/local/include -fpic -g -O2 -Wall -c jpmatLogBoot.cpp -o jpmatLogBoot.o In file included from /home/biocbuild/bbs-3.8-bioc/R/library/RcppArmadillo/include/armadillo:54:0, from /home/biocbuild/bbs-3.8-bioc/R/library/RcppArmadillo/include/RcppArmadilloForward.h:46, from /home/biocbuild/bbs-3.8-bioc/R/library/RcppArmadillo/include/RcppArmadillo.h:31, from jpmatLogBoot.h:4, from jpmatLogBoot.cpp:1: /home/biocbuild/bbs-3.8-bioc/R/library/RcppArmadillo/include/armadillo_bits/compiler_setup.hpp:514:108: note: #pragma message: NOTE: suggest to enable C++14 mode for faster code; add -std=c++14 to compiler flags #pragma message ("NOTE: suggest to enable C++14 mode for faster code; add -std=c++14 to compiler flags") ^ jpmatLogBoot.cpp: In function ‘SEXPREC* logBootPosterior(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: jpmatLogBoot.cpp:200:24: warning: unused variable ‘maxv’ [-Wunused-variable] double maxv=nbp.max(maxij); ^ jpmatLogBoot.cpp: In function ‘SEXPREC* logBootBatchPosterior(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)’: jpmatLogBoot.cpp:443:10: warning: unused variable ‘maxv’ [-Wunused-variable] double maxv=nbp.max(maxij); ^ g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.8-bioc/R/library/RcppArmadillo/include" -I/usr/local/include -fpic -g -O2 -Wall -c matSlideMult.cpp -o matSlideMult.o In file included from /home/biocbuild/bbs-3.8-bioc/R/library/RcppArmadillo/include/armadillo:54:0, from /home/biocbuild/bbs-3.8-bioc/R/library/RcppArmadillo/include/RcppArmadilloForward.h:46, from /home/biocbuild/bbs-3.8-bioc/R/library/RcppArmadillo/include/RcppArmadillo.h:31, from matSlideMult.h:4, from matSlideMult.cpp:1: /home/biocbuild/bbs-3.8-bioc/R/library/RcppArmadillo/include/armadillo_bits/compiler_setup.hpp:514:108: note: #pragma message: NOTE: suggest to enable C++14 mode for faster code; add -std=c++14 to compiler flags #pragma message ("NOTE: suggest to enable C++14 mode for faster code; add -std=c++14 to compiler flags") ^ g++ -I"/home/biocbuild/bbs-3.8-bioc/R/include" -DNDEBUG -I"/home/biocbuild/bbs-3.8-bioc/R/library/Rcpp/include" -I"/home/biocbuild/bbs-3.8-bioc/R/library/RcppArmadillo/include" -I/usr/local/include -fpic -g -O2 -Wall -c pagoda.cpp -o pagoda.o In file included from /home/biocbuild/bbs-3.8-bioc/R/library/RcppArmadillo/include/armadillo:54:0, from /home/biocbuild/bbs-3.8-bioc/R/library/RcppArmadillo/include/RcppArmadilloForward.h:46, from /home/biocbuild/bbs-3.8-bioc/R/library/RcppArmadillo/include/RcppArmadillo.h:31, from pagoda.h:4, from pagoda.cpp:1: /home/biocbuild/bbs-3.8-bioc/R/library/RcppArmadillo/include/armadillo_bits/compiler_setup.hpp:514:108: note: #pragma message: NOTE: suggest to enable C++14 mode for faster code; add -std=c++14 to compiler flags #pragma message ("NOTE: suggest to enable C++14 mode for faster code; add -std=c++14 to compiler flags") ^ g++ -shared -L/home/biocbuild/bbs-3.8-bioc/R/lib -L/usr/local/lib -o scde.so bwpca.o jpmatLogBoot.o matSlideMult.o pagoda.o -L/home/biocbuild/bbs-3.8-bioc/R/lib -lRlapack -L/home/biocbuild/bbs-3.8-bioc/R/lib -lRblas -lgfortran -lm -lquadmath -L/home/biocbuild/bbs-3.8-bioc/R/lib -lR installing to /home/biocbuild/bbs-3.8-bioc/R/library/scde/libs ** R ** data *** moving datasets to lazyload DB ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (scde)