Yuan Tian
| Snapshot Date: 2019-04-16 11:00:05 -0400 (Tue, 16 Apr 2019) |
| URL: https://git.bioconductor.org/packages/ChAMPdata |
| Branch: RELEASE_3_8 |
| Last Commit: a75d97a |
| Last Changed Date: 2019-01-27 15:31:20 -0400 (Sun, 27 Jan 2019) |
| Back to Multiple platform build/check report for BioC 3.8 experimental data |
This page was generated on 2019-04-16 15:26:09 -0400 (Tue, 16 Apr 2019).
| Package 52/360 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| ChAMPdata 2.14.1 Yuan Tian
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | [ OK ] | |
| Package: ChAMPdata |
| Version: 2.14.1 |
| Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:ChAMPdata.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings ChAMPdata_2.14.1.tar.gz |
| StartedAt: 2019-04-16 13:32:18 -0400 (Tue, 16 Apr 2019) |
| EndedAt: 2019-04-16 13:36:11 -0400 (Tue, 16 Apr 2019) |
| EllapsedTime: 232.7 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: ChAMPdata.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:ChAMPdata.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings ChAMPdata_2.14.1.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.8-data-experiment/meat/ChAMPdata.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ChAMPdata/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ChAMPdata’ version ‘2.14.1’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ChAMPdata’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 743.0Mb
sub-directories of 1Mb or more:
data 619.3Mb
extdata 123.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... NOTE
Error in nrow(x@elementMetadata) :
no slot of name "elementMetadata" for this object of class "RGChannelSetExtended"
Calls: <Anonymous> ... check_one -> lapply -> FUN -> length -> length -> nrow
Execution halted
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
ChAMPdata-package 33.008 0.580 40.354
testDataSet 10.656 0.108 10.767
AnnoEPIC 5.652 0.060 5.737
EPIC.manifest.hg19 4.976 0.104 5.646
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
‘/home/biocbuild/bbs-3.8-data-experiment/meat/ChAMPdata.Rcheck/00check.log’
for details.
ChAMPdata.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL ChAMPdata ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’ * installing *source* package ‘ChAMPdata’ ... ** data ** inst ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (ChAMPdata)
ChAMPdata.Rcheck/ChAMPdata-Ex.timings
| name | user | system | elapsed | |
| Anno450K | 2.372 | 0.040 | 2.625 | |
| AnnoEPIC | 5.652 | 0.060 | 5.737 | |
| CellTypeMeans27K | 0.004 | 0.000 | 0.012 | |
| CellTypeMeans450K | 0.004 | 0.000 | 0.002 | |
| ChAMPdata-package | 33.008 | 0.580 | 40.354 | |
| ControlProbes450K | 0.004 | 0.000 | 0.001 | |
| ControlProbesEPIC | 0.000 | 0.000 | 0.001 | |
| EPIC.manifest.hg19 | 4.976 | 0.104 | 5.646 | |
| EPIC.manifest.pop.hg19 | 3.616 | 0.040 | 3.995 | |
| EPICSimData | 2.308 | 0.072 | 2.382 | |
| MatchGeneName | 0.020 | 0.000 | 0.141 | |
| PathwayList | 0.516 | 0.012 | 0.660 | |
| bloodCtl | 0.000 | 0.000 | 0.002 | |
| hm450.manifest.hg19 | 1.912 | 0.020 | 2.017 | |
| hm450.manifest.pop.hg19 | 1.216 | 0.004 | 1.282 | |
| hprdAsigH | 2.724 | 0.184 | 2.933 | |
| illumina450Gr | 2.288 | 0.044 | 2.331 | |
| illuminaEPICGr | 2.716 | 0.012 | 2.732 | |
| multi.hit | 1.000 | 0.004 | 1.145 | |
| probe.features | 0.8 | 0.0 | 0.8 | |
| probe.features.epic | 1.836 | 0.016 | 1.857 | |
| probeInfoALL.epic.lv | 0.844 | 0.008 | 0.851 | |
| probeInfoALL.lv | 0.536 | 0.004 | 0.540 | |
| snp.hit | 0.892 | 0.004 | 1.530 | |
| testDataSet | 10.656 | 0.108 | 10.767 | |