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### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data curatedCRCData
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* checking for file ‘curatedCRCData/DESCRIPTION’ ... OK
* preparing ‘curatedCRCData’:
* checking DESCRIPTION meta-information ... OK
* installing the package to process help pages
* building the PDF package manual
Hmm ... looks like a package
Converting Rd files to LaTeX ...
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(/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [2]
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[] \T1/zi4/m/n/10 Experimenter name: Auman JT, Church R, Lee SY, Watson MA, F
leshman JW, Mcleod HL.??Celecoxib pre-treatment in human colorectal adenocarcin
oma patients is associated with gene expression alterations suggestive of dimin
ished cellular proliferation.??Eur J Cancer??2008 Aug[]
Overfull \hbox (444.78088pt too wide) in paragraph at lines 99--99
[] \T1/zi4/m/n/10 Title: Celecoxib pre-treatment in human colorectal adenocar
cinoma patients is associated with gene expression alterations suggestive of di
minished cellular proliferation.[]
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [3] [4]
(/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [5]
Overfull \hbox (541.78088pt too wide) in paragraph at lines 226--226
[] \T1/zi4/m/n/10 Experimenter name: Lips EH, van Eijk R, de Graaf EJ, Oostin
g J et al.??Integrating chromosomal aberrations and gene expression profiles to
dissect rectal tumorigenesis.BMC Cancer??2008 Oct 29[]
Overfull \hbox (121.78088pt too wide) in paragraph at lines 229--229
[] \T1/zi4/m/n/10 Title: Integrating chromosomal aberrations and gene express
ion profiles to dissect rectal tumorigenesis.[]
[6] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [7]
Overfull \hbox (633.78088pt too wide) in paragraph at lines 341--341
[] \T1/zi4/m/n/10 Experimenter name: Staub E, Groene J, Heinze M, Mennerich D
et al.??An expression module of WIPF1-coexpressed genes identifies patients wi
th favorable prognosis in three tumor types.??J Mol Med (Berl)??2009 Jun[]
Overfull \hbox (202.78088pt too wide) in paragraph at lines 344--344
[] \T1/zi4/m/n/10 Title: An expression module of WIPF1-coexpressed genes iden
tifies patients with favorable prognosis in three tumor types.[]
[8] [9]
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\T1/ptm/m/n/10 stream ef-fects of dif-fer-en-tial gene ex-pres-sion.DNA mi-croa
r-ray data on 89 MSI and 140 microsatellite-
Overfull \hbox (714.78088pt too wide) in paragraph at lines 505--505
[] \T1/zi4/m/n/10 Experimenter name: Jorissen RN, Lipton L, Gibbs P, Chapman
M et al.??DNA copy-number alterations underlie gene expression differences betw
een microsatellite stable and unstable colorectal cancers.??Clin Cancer Res??20
08 Dec 15[]
Overfull \hbox (268.78088pt too wide) in paragraph at lines 508--508
[] \T1/zi4/m/n/10 Title: DNA copy-number alterations underlie gene expression
differences between microsatellite stable and unstable colorectal cancers.[]
[11] [12] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def)
Overfull \hbox (5.87547pt too wide) in paragraph at lines 578--579
\T1/ptm/m/n/10 stream ef-fects of dif-fer-en-tial gene ex-pres-sion.DNA mi-croa
r-ray data on 89 MSI and 140 microsatellite-
Overfull \hbox (696.78088pt too wide) in paragraph at lines 591--591
[] \T1/zi4/m/n/10 Experimenter name: Jorissen RN, Lipton L, Gibbs P, Chapman
M et al. DNA copy-number alterations underlie gene expression differences betwe
en microsatellite stable and unstable colorectal cancers. Clin Cancer Res 2008
Dec 15[]
Overfull \hbox (268.78088pt too wide) in paragraph at lines 594--594
[] \T1/zi4/m/n/10 Title: DNA copy-number alterations underlie gene expression
differences between microsatellite stable and unstable colorectal cancers.[]
[13] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [14]
Overfull \hbox (707.78088pt too wide) in paragraph at lines 677--677
[] \T1/zi4/m/n/10 Experimenter name: Watanabe T, Kobunai T, Yamamoto Y, Matsu
da K et al.??Gene expression signature and response to the use of leucovorin, f
luorouracil and oxaliplatin in colorectal cancer patients.??Clin Transl Oncol??
2011 Jun[]
Overfull \hbox (250.78088pt too wide) in paragraph at lines 680--680
[] \T1/zi4/m/n/10 Title: Gene expression signature and response to the use of
leucovorin, fluorouracil and oxaliplatin in colorectal cancer patients.[]
[15] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [16]
Overfull \hbox (701.78088pt too wide) in paragraph at lines 759--759
[] \T1/zi4/m/n/10 Experimenter name: Jorissen RN, Gibbs P, Christie M, Prakas
h S et al.??Metastasis-Associated Gene Expression Changes Predict Poor Outcomes
in Patients with Dukes Stage B and C Colorectal Cancer.??Clin Cancer Res??2009
Dec 15[]
Overfull \hbox (245.78088pt too wide) in paragraph at lines 762--762
[] \T1/zi4/m/n/10 Title: Metastasis-Associated Gene Expression Changes Predic
t Poor Outcomes in Patients with Dukes Stage B and C Colorectal Cancer.[]
[17] [18] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [19]
Overfull \hbox (519.78088pt too wide) in paragraph at lines 897--897
[] \T1/zi4/m/n/10 Experimenter name: Reid JF, Gariboldi M, Sokolova V, Capobi
anco P et al.??Integrative approach for prioritizing cancer genes in sporadic c
olon cancer.??Genes Chromosomes Cancer??2009 Nov[]
Overfull \hbox (17.78088pt too wide) in paragraph at lines 900--900
[] \T1/zi4/m/n/10 Title: Integrative approach for prioritizing cancer genes i
n sporadic colon cancer.[]
[20] [21] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [22]
Overfull \hbox (641.78088pt too wide) in paragraph at lines 1043--1043
[] \T1/zi4/m/n/10 Experimenter name: Smith JJ, Deane NG, Wu F, Merchant NB et
al.??Experimentally derived metastasis gene expression profile predicts recurr
ence and death in patients with colon cancer.??Gastroenterology??2010 Mar[]
Overfull \hbox (222.78088pt too wide) in paragraph at lines 1046--1046
[] \T1/zi4/m/n/10 Title: Experimentally derived metastasis gene expression pr
ofile predicts recurrence and death in patients with colon cancer.[]
[23] [24]
Underfull \vbox (badness 10000) has occurred while \output is active [25]
(/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def)
Overfull \hbox (641.78088pt too wide) in paragraph at lines 1207--1207
[] \T1/zi4/m/n/10 Experimenter name: Smith JJ, Deane NG, Wu F, Merchant NB et
al.??Experimentally derived metastasis gene expression profile predicts recurr
ence and death in patients with colon cancer.??Gastroenterology??2010 Mar[]
Overfull \hbox (222.78088pt too wide) in paragraph at lines 1210--1210
[] \T1/zi4/m/n/10 Title: Experimentally derived metastasis gene expression pr
ofile predicts recurrence and death in patients with colon cancer.[]
[26] [27]
Underfull \vbox (badness 10000) has occurred while \output is active [28]
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Overfull \hbox (641.78088pt too wide) in paragraph at lines 1367--1367
[] \T1/zi4/m/n/10 Experimenter name: Smith JJ, Deane NG, Wu F, Merchant NB et
al.??Experimentally derived metastasis gene expression profile predicts recurr
ence and death in patients with colon cancer.??Gastroenterology??2010 Mar[]
[29]
Overfull \hbox (222.78088pt too wide) in paragraph at lines 1370--1370
[] \T1/zi4/m/n/10 Title: Experimentally derived metastasis gene expression pr
ofile predicts recurrence and death in patients with colon cancer.[]
[30]
Underfull \vbox (badness 10000) has occurred while \output is active [31]
(/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [32]
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[] \T1/zi4/m/n/10 Experimenter name: Matsuyama T, Ishikawa T, Mogushi K, Yosh
ida T et al.??MUC12 mRNA expression is an independent marker of prognosis in st
age II and stage III colorectal cancer.??Int J Cancer??2010 Nov 15[]
Overfull \hbox (150.78088pt too wide) in paragraph at lines 1526--1526
[] \T1/zi4/m/n/10 Title: MUC12 mRNA expression is an independent marker of pr
ognosis in stage II and stage III colorectal cancer.[]
[33] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [34]
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[] \T1/zi4/m/n/10 Experimenter name: EXpression Project for Oncology, Interna
tional Genomics Consortium, www.intgen.org[]
[35]
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[]\T1/ptm/m/n/10 This study aimed to iden-tify a novel biomarker or a tar-get o
f treat-ment for col-orec-tal can-cer (CRC).The
Overfull \hbox (479.78088pt too wide) in paragraph at lines 1759--1759
[] \T1/zi4/m/n/10 Experimenter name: Tsukamoto S, Ishikawa T, Iida S, Ishigur
o M et al.??Clinical significance of osteoprotegerin expression in human colore
ctal cancer.??Clin Cancer Res2011 Apr 15[]
Overfull \hbox (33.78088pt too wide) in paragraph at lines 1762--1762
[] \T1/zi4/m/n/10 Title: Clinical significance of osteoprotegerin expression
in human colorectal cancer.[]
[37] [38] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def)
Overfull \hbox (742.78088pt too wide) in paragraph at lines 1861--1861
[] \T1/zi4/m/n/10 Experimenter name: Kogo R, Shimamura T, Mimori K, Kawahara
K et al.??Long noncoding RNA HOTAIR regulates polycomb-dependent chromatin modi
fication and is associated with poor prognosis in colorectal cancers.??Cancer R
es??2011 Oct 15[]
Overfull \hbox (320.78088pt too wide) in paragraph at lines 1864--1864
[] \T1/zi4/m/n/10 Title: Long noncoding RNA HOTAIR regulates polycomb-depende
nt chromatin modification and is associated with poor prognosis in colorectal c
ancers.[]
[39] [40] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [41]
Overfull \hbox (881.78088pt too wide) in paragraph at lines 1988--1988
[] \T1/zi4/m/n/10 Experimenter name: Sveen A,????esen TH,??Rognum TO,??Lothe
RA,??Skotheim RI. Transcriptome instability in colorectal cancer identified by
exon microarray analyses: Associations with splicing factor expression levels a
nd patient survival. Genome Med 2011 May 27[]
Overfull \hbox (428.78088pt too wide) in paragraph at lines 1991--1991
[] \T1/zi4/m/n/10 Title: Transcriptome instability in colorectal cancer ident
ified by exon microarray analyses: Associations with splicing factor expression
levels and patient survival.[]
[42] [43] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [44]
Overfull \hbox (845.78088pt too wide) in paragraph at lines 2111--2111
[] \T1/zi4/m/n/10 Experimenter name: Sveen A, Agesen TH, Nesbakken A, Rognum
TO et al.??Transcriptome instability in colorectal cancer identified by exon mi
croarray analyses: Associations with splicing factor expression levels and pati
ent survival.Genome Med??2011 May 27[]
Overfull \hbox (428.78088pt too wide) in paragraph at lines 2114--2114
[] \T1/zi4/m/n/10 Title: Transcriptome instability in colorectal cancer ident
ified by exon microarray analyses: Associations with splicing factor expression
levels and patient survival.[]
[45]
Underfull \vbox (badness 10000) has occurred while \output is active [46]
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Overfull \hbox (731.78088pt too wide) in paragraph at lines 2234--2234
[] \T1/zi4/m/n/10 Experimenter name: Bandr??E,??Malumbres R,??Cubedo E,??Sola
J,??Garc??Foncillas J,??Labarga A. A gene signature of 8 genes could identify
the risk of recurrence and progression in Dukes\TS1/zi4/m/n/10 ' \T1/zi4/m/n/10
B colon cancer patients. Oncol Rep 2007 May[]
Overfull \hbox (60.78088pt too wide) in paragraph at lines 2235--2235
[] \T1/zi4/m/n/10 Laboratory: Bandr??E,??Malumbres R,??Cubedo E,??Sola J,??Ga
rc??Foncillas J,??Labarga A 2005[]
Overfull \hbox (207.78088pt too wide) in paragraph at lines 2237--2237
[] \T1/zi4/m/n/10 Title: A gene signature of 8 genes could identify the risk
of recurrence and progression in Dukes\TS1/zi4/m/n/10 ' \T1/zi4/m/n/10 B colon
cancer patients.[]
[47] [48] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [49]
Overfull \hbox (1051.78088pt too wide) in paragraph at lines 2376--2376
[] \T1/zi4/m/n/10 Experimenter name: Vilar E,??Gruber SB,??Rennert G,??Bartni
k CM,??Stenzel SL,??Iniesta MD,??Raskin L,Mukherjee B,??Ahn J,??Moreno V,??Morg
an MA. MRE11 deficiency increases sensitivity to poly(ADP-ribose) polymerase in
hibition in microsatellite unstable colorectal cancers. Cancer Res 2011 Apr 1[]
Overfull \hbox (269.78088pt too wide) in paragraph at lines 2379--2379
[] \T1/zi4/m/n/10 Title: MRE11 deficiency increases sensitivity to poly(ADP-r
ibose) polymerase inhibition in microsatellite unstable colorectal cancers.[]
[50] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [51]
Overfull \hbox (1051.78088pt too wide) in paragraph at lines 2470--2470
[] \T1/zi4/m/n/10 Experimenter name: Vilar E,??Gruber SB,??Rennert G,??Bartni
k CM,??Stenzel SL,??Iniesta MD,??Raskin L,Mukherjee B,??Ahn J,??Moreno V,??Morg
an MA. MRE11 deficiency increases sensitivity to poly(ADP-ribose) polymerase in
hibition in microsatellite unstable colorectal cancers. Cancer Res 2011 Apr 1[]
Overfull \hbox (269.78088pt too wide) in paragraph at lines 2473--2473
[] \T1/zi4/m/n/10 Title: MRE11 deficiency increases sensitivity to poly(ADP-r
ibose) polymerase inhibition in microsatellite unstable colorectal cancers.[]
[52] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [53]
Overfull \hbox (428.78088pt too wide) in paragraph at lines 2564--2564
[] \T1/zi4/m/n/10 Experimenter name: Birnbaum DJ, Laibe S, Ferrari A, Lagarde
A et al.??Expression Profiles in Stage II Colon Cancer According to APC Gene S
tatus.??Transl Oncol??2012 Apr[]
Overfull \hbox (5.78088pt too wide) in paragraph at lines 2567--2567
[] \T1/zi4/m/n/10 Title: Expression Profiles in Stage II Colon Cancer Accordi
ng to APC Gene Status.[]
[54] [55] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [56]
Overfull \hbox (84.78088pt too wide) in paragraph at lines 2702--2702
[] \T1/zi4/m/n/10 Experimenter name: Bernal M,??Garc??Alcalde F,??Concha ????
Blanco A,??Garrido F,??Ruiz-Cabello F[]
Overfull \hbox (74.78088pt too wide) in paragraph at lines 2703--2703
[] \T1/zi4/m/n/10 Laboratory: Bernal M,??Garc??Alcalde F,??Concha ????Blanco
A,??Garrido F,??Ruiz-Cabello F 2011[]
Overfull \hbox (240.78088pt too wide) in paragraph at lines 2705--2705
[] \T1/zi4/m/n/10 Title: Genome-wide profiling characterizes CRCs with geneti
c instability and specific routes to HLA class I loss and immunoescape[]
[57] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def)
Overfull \hbox (501.78088pt too wide) in paragraph at lines 2788--2788
[] \T1/zi4/m/n/10 Experimenter name: Tsuji S, Midorikawa Y, Takahashi T, Yagi
K et al.??Potential responders to FOLFOX therapy for colorectal cancer by Rand
om Forests analysis.??Br J Cancer??2012 Jan 3[]
Overfull \hbox (75.78088pt too wide) in paragraph at lines 2791--2791
[] \T1/zi4/m/n/10 Title: Potential responders to FOLFOX therapy for colorecta
l cancer by Random Forests analysis.[]
[58] [59]
Underfull \vbox (badness 10000) has occurred while \output is active [60]
(/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def)
Overfull \hbox (588.78088pt too wide) in paragraph at lines 2926--2926
[] \T1/zi4/m/n/10 Experimenter name: Bianchini M, Levy E, Zucchini C, Pinski
V et al.??Comparative study of gene expression by cDNA microarray in human colo
rectal cancer tissues and normal mucosa.??Int J Oncol??2006 Jul[]
Overfull \hbox (176.78088pt too wide) in paragraph at lines 2929--2929
[] \T1/zi4/m/n/10 Title: Comparative study of gene expression by cDNA microar
ray in human colorectal cancer tissues and normal mucosa.[]
[61] [62] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [63]
Overfull \hbox (682.78088pt too wide) in paragraph at lines 3052--3052
[] \T1/zi4/m/n/10 Experimenter name: de Sousa E Melo F, Colak S, Buikhuisen J
, Koster J et al.??Methylation of cancer-stem-cell-associated Wnt target genes
predicts poor prognosis in colorectal cancer patients.??Cell Stem Cell??2011 No
v 4[]
Overfull \hbox (83.78088pt too wide) in paragraph at lines 3055--3055
[] \T1/zi4/m/n/10 Title: Mutations in the Ras-Raf Axis underlie the prognosti
c value of CD133 in colorectal cancer.[]
[64] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [65]
Overfull \hbox (622.78088pt too wide) in paragraph at lines 3162--3162
[] \T1/zi4/m/n/10 Experimenter name: Marisa L, de Reyni??A, Duval A, Selves J
et al.??Gene expression classification of colon cancer into molecular subtypes
: characterization, validation, and prognostic value.??PLoS Med??2013[]
Overfull \hbox (248.78088pt too wide) in paragraph at lines 3165--3165
[] \T1/zi4/m/n/10 Title: Gene expression classification of colon cancer into
molecular subtypes: characterization, validation, and prognostic value.[]
[66] [67]
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Overfull \hbox (383.78088pt too wide) in paragraph at lines 3316--3316
[] \T1/zi4/m/n/10 Experimenter name: Graudens E, Boulanger V, Mollard C, Mari
age-Samson R et al.??Deciphering cellular states of innate tumor drug responses
.??Genome Biol??2006[]
[70]
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[] \T1/zi4/m/n/10 Experimenter name: Laiho P, Kokko A, Vanharanta S, Salovaar
a R et al.??Serrated carcinomas form a subclass of colorectal cancer with disti
nct molecular basis.??Oncogene2007 Jan 11[]
[72]
Overfull \hbox (70.78088pt too wide) in paragraph at lines 3465--3465
[] \T1/zi4/m/n/10 Title: Serrated carcinomas form a subclass of colorectal ca
ncer with distinct molecular basis.[]
[73]
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[] \T1/zi4/m/n/10 Experimenter name: Watanabe T, Kobunai T, Sakamoto E, Yamam
oto Y et al.??Gene expression signature for recurrence in stage III colorectal
cancers.??Cancer??2009 Jan 15[]
Overfull \hbox (2.78088pt too wide) in paragraph at lines 3591--3591
[] \T1/zi4/m/n/10 Title: Gene expression signature for recurrence in stage II
I colorectal cancers.[]
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[] \T1/zi4/m/n/10 Experimenter name: Profiling project of a panel of tubular
adenoma and serrated adenoma patient material collected in the Academic Medical
Center[]
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[] \T1/zi4/m/n/10 Laboratory: Medema JP,??de Sousa E Melo F,??Vermeulen L,??J
ansen M,??Dekker E,??Van Noesel C,??Fessler E 2013[]
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[] \T1/zi4/m/n/10 Experimenter name: Comprehensive molecular characterization
of human colon and rectal cancer. Nature 2012, 487:330-337[]
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[] \T1/zi4/m/n/10 Title: Comprehensive molecular characterization of human co
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[] \T1/zi4/m/n/10 Title: Comprehensive molecular characterization of human co
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[] \T1/zi4/m/n/10 Title: Comprehensive molecular characterization of human co
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[] \T1/zi4/m/n/10 Title: Comprehensive molecular characterization of human co
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[] \T1/zi4/m/n/10 Experimenter name: Auman JT, Church R, Lee SY, Watson MA, F
leshman JW, Mcleod HL.??Celecoxib pre-treatment in human colorectal adenocarcin
oma patients is associated with gene expression alterations suggestive of dimin
ished cellular proliferation.??Eur J Cancer??2008 Aug[]
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[] \T1/zi4/m/n/10 Title: Celecoxib pre-treatment in human colorectal adenocar
cinoma patients is associated with gene expression alterations suggestive of di
minished cellular proliferation.[]
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [3] [4]
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[] \T1/zi4/m/n/10 Experimenter name: Lips EH, van Eijk R, de Graaf EJ, Oostin
g J et al.??Integrating chromosomal aberrations and gene expression profiles to
dissect rectal tumorigenesis.BMC Cancer??2008 Oct 29[]
Overfull \hbox (121.78088pt too wide) in paragraph at lines 229--229
[] \T1/zi4/m/n/10 Title: Integrating chromosomal aberrations and gene express
ion profiles to dissect rectal tumorigenesis.[]
[6] [7] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def)
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[] \T1/zi4/m/n/10 Experimenter name: Staub E, Groene J, Heinze M, Mennerich D
et al.??An expression module of WIPF1-coexpressed genes identifies patients wi
th favorable prognosis in three tumor types.??J Mol Med (Berl)??2009 Jun[]
Overfull \hbox (202.78088pt too wide) in paragraph at lines 344--344
[] \T1/zi4/m/n/10 Title: An expression module of WIPF1-coexpressed genes iden
tifies patients with favorable prognosis in three tumor types.[]
[8] [9]
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\T1/ptm/m/n/10 stream ef-fects of dif-fer-en-tial gene ex-pres-sion.DNA mi-croa
r-ray data on 89 MSI and 140 microsatellite-
[11]
Overfull \hbox (714.78088pt too wide) in paragraph at lines 505--505
[] \T1/zi4/m/n/10 Experimenter name: Jorissen RN, Lipton L, Gibbs P, Chapman
M et al.??DNA copy-number alterations underlie gene expression differences betw
een microsatellite stable and unstable colorectal cancers.??Clin Cancer Res??20
08 Dec 15[]
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[] \T1/zi4/m/n/10 Title: DNA copy-number alterations underlie gene expression
differences between microsatellite stable and unstable colorectal cancers.[]
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\T1/ptm/m/n/10 stream ef-fects of dif-fer-en-tial gene ex-pres-sion.DNA mi-croa
r-ray data on 89 MSI and 140 microsatellite-
[13]
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[] \T1/zi4/m/n/10 Experimenter name: Jorissen RN, Lipton L, Gibbs P, Chapman
M et al. DNA copy-number alterations underlie gene expression differences betwe
en microsatellite stable and unstable colorectal cancers. Clin Cancer Res 2008
Dec 15[]
Overfull \hbox (268.78088pt too wide) in paragraph at lines 594--594
[] \T1/zi4/m/n/10 Title: DNA copy-number alterations underlie gene expression
differences between microsatellite stable and unstable colorectal cancers.[]
[14] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [15]
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[] \T1/zi4/m/n/10 Experimenter name: Watanabe T, Kobunai T, Yamamoto Y, Matsu
da K et al.??Gene expression signature and response to the use of leucovorin, f
luorouracil and oxaliplatin in colorectal cancer patients.??Clin Transl Oncol??
2011 Jun[]
Overfull \hbox (250.78088pt too wide) in paragraph at lines 680--680
[] \T1/zi4/m/n/10 Title: Gene expression signature and response to the use of
leucovorin, fluorouracil and oxaliplatin in colorectal cancer patients.[]
[16] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def)
Overfull \hbox (701.78088pt too wide) in paragraph at lines 759--759
[] \T1/zi4/m/n/10 Experimenter name: Jorissen RN, Gibbs P, Christie M, Prakas
h S et al.??Metastasis-Associated Gene Expression Changes Predict Poor Outcomes
in Patients with Dukes Stage B and C Colorectal Cancer.??Clin Cancer Res??2009
Dec 15[]
Overfull \hbox (245.78088pt too wide) in paragraph at lines 762--762
[] \T1/zi4/m/n/10 Title: Metastasis-Associated Gene Expression Changes Predic
t Poor Outcomes in Patients with Dukes Stage B and C Colorectal Cancer.[]
[17] [18]
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[] \T1/zi4/m/n/10 Experimenter name: Reid JF, Gariboldi M, Sokolova V, Capobi
anco P et al.??Integrative approach for prioritizing cancer genes in sporadic c
olon cancer.??Genes Chromosomes Cancer??2009 Nov[]
Overfull \hbox (17.78088pt too wide) in paragraph at lines 900--900
[] \T1/zi4/m/n/10 Title: Integrative approach for prioritizing cancer genes i
n sporadic colon cancer.[]
[20] [21]
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[] \T1/zi4/m/n/10 Experimenter name: Smith JJ, Deane NG, Wu F, Merchant NB et
al.??Experimentally derived metastasis gene expression profile predicts recurr
ence and death in patients with colon cancer.??Gastroenterology??2010 Mar[]
Overfull \hbox (222.78088pt too wide) in paragraph at lines 1046--1046
[] \T1/zi4/m/n/10 Title: Experimentally derived metastasis gene expression pr
ofile predicts recurrence and death in patients with colon cancer.[]
[23] [24]
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[] \T1/zi4/m/n/10 Experimenter name: Smith JJ, Deane NG, Wu F, Merchant NB et
al.??Experimentally derived metastasis gene expression profile predicts recurr
ence and death in patients with colon cancer.??Gastroenterology??2010 Mar[]
Overfull \hbox (222.78088pt too wide) in paragraph at lines 1210--1210
[] \T1/zi4/m/n/10 Title: Experimentally derived metastasis gene expression pr
ofile predicts recurrence and death in patients with colon cancer.[]
[27]
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[] \T1/zi4/m/n/10 Experimenter name: Smith JJ, Deane NG, Wu F, Merchant NB et
al.??Experimentally derived metastasis gene expression profile predicts recurr
ence and death in patients with colon cancer.??Gastroenterology??2010 Mar[]
Overfull \hbox (222.78088pt too wide) in paragraph at lines 1370--1370
[] \T1/zi4/m/n/10 Title: Experimentally derived metastasis gene expression pr
ofile predicts recurrence and death in patients with colon cancer.[]
[30] [31] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [32]
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[] \T1/zi4/m/n/10 Experimenter name: Matsuyama T, Ishikawa T, Mogushi K, Yosh
ida T et al.??MUC12 mRNA expression is an independent marker of prognosis in st
age II and stage III colorectal cancer.??Int J Cancer??2010 Nov 15[]
Overfull \hbox (150.78088pt too wide) in paragraph at lines 1526--1526
[] \T1/zi4/m/n/10 Title: MUC12 mRNA expression is an independent marker of pr
ognosis in stage II and stage III colorectal cancer.[]
[33] [34] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def)
Overfull \hbox (108.78088pt too wide) in paragraph at lines 1629--1629
[] \T1/zi4/m/n/10 Experimenter name: EXpression Project for Oncology, Interna
tional Genomics Consortium, www.intgen.org[]
[35] [36] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def)
Overfull \hbox (8.67705pt too wide) in paragraph at lines 1746--1747
[]\T1/ptm/m/n/10 This study aimed to iden-tify a novel biomarker or a tar-get o
f treat-ment for col-orec-tal can-cer (CRC).The
[37]
Overfull \hbox (479.78088pt too wide) in paragraph at lines 1759--1759
[] \T1/zi4/m/n/10 Experimenter name: Tsukamoto S, Ishikawa T, Iida S, Ishigur
o M et al.??Clinical significance of osteoprotegerin expression in human colore
ctal cancer.??Clin Cancer Res2011 Apr 15[]
Overfull \hbox (33.78088pt too wide) in paragraph at lines 1762--1762
[] \T1/zi4/m/n/10 Title: Clinical significance of osteoprotegerin expression
in human colorectal cancer.[]
[38] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [39]
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[] \T1/zi4/m/n/10 Experimenter name: Kogo R, Shimamura T, Mimori K, Kawahara
K et al.??Long noncoding RNA HOTAIR regulates polycomb-dependent chromatin modi
fication and is associated with poor prognosis in colorectal cancers.??Cancer R
es??2011 Oct 15[]
Overfull \hbox (320.78088pt too wide) in paragraph at lines 1864--1864
[] \T1/zi4/m/n/10 Title: Long noncoding RNA HOTAIR regulates polycomb-depende
nt chromatin modification and is associated with poor prognosis in colorectal c
ancers.[]
Underfull \vbox (badness 1881) has occurred while \output is active [40]
[41] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [42]
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[] \T1/zi4/m/n/10 Experimenter name: Sveen A,????esen TH,??Rognum TO,??Lothe
RA,??Skotheim RI. Transcriptome instability in colorectal cancer identified by
exon microarray analyses: Associations with splicing factor expression levels a
nd patient survival. Genome Med 2011 May 27[]
Overfull \hbox (428.78088pt too wide) in paragraph at lines 1991--1991
[] \T1/zi4/m/n/10 Title: Transcriptome instability in colorectal cancer ident
ified by exon microarray analyses: Associations with splicing factor expression
levels and patient survival.[]
[43] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [44]
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[] \T1/zi4/m/n/10 Experimenter name: Sveen A, Agesen TH, Nesbakken A, Rognum
TO et al.??Transcriptome instability in colorectal cancer identified by exon mi
croarray analyses: Associations with splicing factor expression levels and pati
ent survival.Genome Med??2011 May 27[]
Overfull \hbox (428.78088pt too wide) in paragraph at lines 2114--2114
[] \T1/zi4/m/n/10 Title: Transcriptome instability in colorectal cancer ident
ified by exon microarray analyses: Associations with splicing factor expression
levels and patient survival.[]
[45] [46] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [47]
Overfull \hbox (731.78088pt too wide) in paragraph at lines 2234--2234
[] \T1/zi4/m/n/10 Experimenter name: Bandr??E,??Malumbres R,??Cubedo E,??Sola
J,??Garc??Foncillas J,??Labarga A. A gene signature of 8 genes could identify
the risk of recurrence and progression in Dukes\TS1/zi4/m/n/10 ' \T1/zi4/m/n/10
B colon cancer patients. Oncol Rep 2007 May[]
Overfull \hbox (60.78088pt too wide) in paragraph at lines 2235--2235
[] \T1/zi4/m/n/10 Laboratory: Bandr??E,??Malumbres R,??Cubedo E,??Sola J,??Ga
rc??Foncillas J,??Labarga A 2005[]
Overfull \hbox (207.78088pt too wide) in paragraph at lines 2237--2237
[] \T1/zi4/m/n/10 Title: A gene signature of 8 genes could identify the risk
of recurrence and progression in Dukes\TS1/zi4/m/n/10 ' \T1/zi4/m/n/10 B colon
cancer patients.[]
[48]
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[] \T1/zi4/m/n/10 Experimenter name: Vilar E,??Gruber SB,??Rennert G,??Bartni
k CM,??Stenzel SL,??Iniesta MD,??Raskin L,Mukherjee B,??Ahn J,??Moreno V,??Morg
an MA. MRE11 deficiency increases sensitivity to poly(ADP-ribose) polymerase in
hibition in microsatellite unstable colorectal cancers. Cancer Res 2011 Apr 1[]
Overfull \hbox (269.78088pt too wide) in paragraph at lines 2379--2379
[] \T1/zi4/m/n/10 Title: MRE11 deficiency increases sensitivity to poly(ADP-r
ibose) polymerase inhibition in microsatellite unstable colorectal cancers.[]
[51] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [52]
Overfull \hbox (1051.78088pt too wide) in paragraph at lines 2470--2470
[] \T1/zi4/m/n/10 Experimenter name: Vilar E,??Gruber SB,??Rennert G,??Bartni
k CM,??Stenzel SL,??Iniesta MD,??Raskin L,Mukherjee B,??Ahn J,??Moreno V,??Morg
an MA. MRE11 deficiency increases sensitivity to poly(ADP-ribose) polymerase in
hibition in microsatellite unstable colorectal cancers. Cancer Res 2011 Apr 1[]
Overfull \hbox (269.78088pt too wide) in paragraph at lines 2473--2473
[] \T1/zi4/m/n/10 Title: MRE11 deficiency increases sensitivity to poly(ADP-r
ibose) polymerase inhibition in microsatellite unstable colorectal cancers.[]
[53] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def)
Overfull \hbox (428.78088pt too wide) in paragraph at lines 2564--2564
[] \T1/zi4/m/n/10 Experimenter name: Birnbaum DJ, Laibe S, Ferrari A, Lagarde
A et al.??Expression Profiles in Stage II Colon Cancer According to APC Gene S
tatus.??Transl Oncol??2012 Apr[]
[54]
Overfull \hbox (5.78088pt too wide) in paragraph at lines 2567--2567
[] \T1/zi4/m/n/10 Title: Expression Profiles in Stage II Colon Cancer Accordi
ng to APC Gene Status.[]
[55]
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[] \T1/zi4/m/n/10 Experimenter name: Bernal M,??Garc??Alcalde F,??Concha ????
Blanco A,??Garrido F,??Ruiz-Cabello F[]
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[] \T1/zi4/m/n/10 Laboratory: Bernal M,??Garc??Alcalde F,??Concha ????Blanco
A,??Garrido F,??Ruiz-Cabello F 2011[]
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[] \T1/zi4/m/n/10 Title: Genome-wide profiling characterizes CRCs with geneti
c instability and specific routes to HLA class I loss and immunoescape[]
[57] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [58]
Overfull \hbox (501.78088pt too wide) in paragraph at lines 2788--2788
[] \T1/zi4/m/n/10 Experimenter name: Tsuji S, Midorikawa Y, Takahashi T, Yagi
K et al.??Potential responders to FOLFOX therapy for colorectal cancer by Rand
om Forests analysis.??Br J Cancer??2012 Jan 3[]
Overfull \hbox (75.78088pt too wide) in paragraph at lines 2791--2791
[] \T1/zi4/m/n/10 Title: Potential responders to FOLFOX therapy for colorecta
l cancer by Random Forests analysis.[]
[59] [60] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [61]
Overfull \hbox (588.78088pt too wide) in paragraph at lines 2926--2926
[] \T1/zi4/m/n/10 Experimenter name: Bianchini M, Levy E, Zucchini C, Pinski
V et al.??Comparative study of gene expression by cDNA microarray in human colo
rectal cancer tissues and normal mucosa.??Int J Oncol??2006 Jul[]
Overfull \hbox (176.78088pt too wide) in paragraph at lines 2929--2929
[] \T1/zi4/m/n/10 Title: Comparative study of gene expression by cDNA microar
ray in human colorectal cancer tissues and normal mucosa.[]
[62]
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[] \T1/zi4/m/n/10 Experimenter name: de Sousa E Melo F, Colak S, Buikhuisen J
, Koster J et al.??Methylation of cancer-stem-cell-associated Wnt target genes
predicts poor prognosis in colorectal cancer patients.??Cell Stem Cell??2011 No
v 4[]
Overfull \hbox (83.78088pt too wide) in paragraph at lines 3055--3055
[] \T1/zi4/m/n/10 Title: Mutations in the Ras-Raf Axis underlie the prognosti
c value of CD133 in colorectal cancer.[]
[64] [65] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [66]
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[] \T1/zi4/m/n/10 Experimenter name: Marisa L, de Reyni??A, Duval A, Selves J
et al.??Gene expression classification of colon cancer into molecular subtypes
: characterization, validation, and prognostic value.??PLoS Med??2013[]
Overfull \hbox (248.78088pt too wide) in paragraph at lines 3165--3165
[] \T1/zi4/m/n/10 Title: Gene expression classification of colon cancer into
molecular subtypes: characterization, validation, and prognostic value.[]
[67] [68] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [69]
Overfull \hbox (383.78088pt too wide) in paragraph at lines 3316--3316
[] \T1/zi4/m/n/10 Experimenter name: Graudens E, Boulanger V, Mollard C, Mari
age-Samson R et al.??Deciphering cellular states of innate tumor drug responses
.??Genome Biol??2006[]
[70] [71] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [72]
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[] \T1/zi4/m/n/10 Experimenter name: Laiho P, Kokko A, Vanharanta S, Salovaar
a R et al.??Serrated carcinomas form a subclass of colorectal cancer with disti
nct molecular basis.??Oncogene2007 Jan 11[]
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[] \T1/zi4/m/n/10 Title: Serrated carcinomas form a subclass of colorectal ca
ncer with distinct molecular basis.[]
[73] [74] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [75]
Overfull \hbox (425.78088pt too wide) in paragraph at lines 3588--3588
[] \T1/zi4/m/n/10 Experimenter name: Watanabe T, Kobunai T, Sakamoto E, Yamam
oto Y et al.??Gene expression signature for recurrence in stage III colorectal
cancers.??Cancer??2009 Jan 15[]
Overfull \hbox (2.78088pt too wide) in paragraph at lines 3591--3591
[] \T1/zi4/m/n/10 Title: Gene expression signature for recurrence in stage II
I colorectal cancers.[]
[76] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def)
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[] \T1/zi4/m/n/10 Experimenter name: Profiling project of a panel of tubular
adenoma and serrated adenoma patient material collected in the Academic Medical
Center[]
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[] \T1/zi4/m/n/10 Laboratory: Medema JP,??de Sousa E Melo F,??Vermeulen L,??J
ansen M,??Dekker E,??Van Noesel C,??Fessler E 2013[]
[77] [78] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def)
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[] \T1/zi4/m/n/10 Experimenter name: Comprehensive molecular characterization
of human colon and rectal cancer. Nature 2012, 487:330-337[]
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[] \T1/zi4/m/n/10 Title: Comprehensive molecular characterization of human co
lon and rectal cancer.[]
[79] [80]
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[] \T1/zi4/m/n/10 Experimenter name: Comprehensive molecular characterization
of human colon and rectal cancer. Nature 2012, 487:330-337[]
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[] \T1/zi4/m/n/10 Title: Comprehensive molecular characterization of human co
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[84]
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[] \T1/zi4/m/n/10 Experimenter name: Comprehensive molecular characterization
of human colon and rectal cancer. Nature 2012, 487:330-337[]
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[] \T1/zi4/m/n/10 Title: Comprehensive molecular characterization of human co
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[89]
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[] \T1/zi4/m/n/10 Experimenter name: Comprehensive molecular characterization
of human colon and rectal cancer. Nature 2012, 487:330-337[]
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[] \T1/zi4/m/n/10 Title: Comprehensive molecular characterization of human co
lon and rectal cancer.[]
[92] [93]
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[] \T1/zi4/m/n/10 Experimenter name: Auman JT, Church R, Lee SY, Watson MA, F
leshman JW, Mcleod HL.??Celecoxib pre-treatment in human colorectal adenocarcin
oma patients is associated with gene expression alterations suggestive of dimin
ished cellular proliferation.??Eur J Cancer??2008 Aug[]
Overfull \hbox (444.78088pt too wide) in paragraph at lines 99--99
[] \T1/zi4/m/n/10 Title: Celecoxib pre-treatment in human colorectal adenocar
cinoma patients is associated with gene expression alterations suggestive of di
minished cellular proliferation.[]
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [3] [4]
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Overfull \hbox (541.78088pt too wide) in paragraph at lines 226--226
[] \T1/zi4/m/n/10 Experimenter name: Lips EH, van Eijk R, de Graaf EJ, Oostin
g J et al.??Integrating chromosomal aberrations and gene expression profiles to
dissect rectal tumorigenesis.BMC Cancer??2008 Oct 29[]
Overfull \hbox (121.78088pt too wide) in paragraph at lines 229--229
[] \T1/zi4/m/n/10 Title: Integrating chromosomal aberrations and gene express
ion profiles to dissect rectal tumorigenesis.[]
[6] [7] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def)
Overfull \hbox (633.78088pt too wide) in paragraph at lines 341--341
[] \T1/zi4/m/n/10 Experimenter name: Staub E, Groene J, Heinze M, Mennerich D
et al.??An expression module of WIPF1-coexpressed genes identifies patients wi
th favorable prognosis in three tumor types.??J Mol Med (Berl)??2009 Jun[]
Overfull \hbox (202.78088pt too wide) in paragraph at lines 344--344
[] \T1/zi4/m/n/10 Title: An expression module of WIPF1-coexpressed genes iden
tifies patients with favorable prognosis in three tumor types.[]
[8] [9]
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\T1/ptm/m/n/10 stream ef-fects of dif-fer-en-tial gene ex-pres-sion.DNA mi-croa
r-ray data on 89 MSI and 140 microsatellite-
[11]
Overfull \hbox (714.78088pt too wide) in paragraph at lines 505--505
[] \T1/zi4/m/n/10 Experimenter name: Jorissen RN, Lipton L, Gibbs P, Chapman
M et al.??DNA copy-number alterations underlie gene expression differences betw
een microsatellite stable and unstable colorectal cancers.??Clin Cancer Res??20
08 Dec 15[]
Overfull \hbox (268.78088pt too wide) in paragraph at lines 508--508
[] \T1/zi4/m/n/10 Title: DNA copy-number alterations underlie gene expression
differences between microsatellite stable and unstable colorectal cancers.[]
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\T1/ptm/m/n/10 stream ef-fects of dif-fer-en-tial gene ex-pres-sion.DNA mi-croa
r-ray data on 89 MSI and 140 microsatellite-
[13]
Overfull \hbox (696.78088pt too wide) in paragraph at lines 591--591
[] \T1/zi4/m/n/10 Experimenter name: Jorissen RN, Lipton L, Gibbs P, Chapman
M et al. DNA copy-number alterations underlie gene expression differences betwe
en microsatellite stable and unstable colorectal cancers. Clin Cancer Res 2008
Dec 15[]
Overfull \hbox (268.78088pt too wide) in paragraph at lines 594--594
[] \T1/zi4/m/n/10 Title: DNA copy-number alterations underlie gene expression
differences between microsatellite stable and unstable colorectal cancers.[]
[14] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [15]
Overfull \hbox (707.78088pt too wide) in paragraph at lines 677--677
[] \T1/zi4/m/n/10 Experimenter name: Watanabe T, Kobunai T, Yamamoto Y, Matsu
da K et al.??Gene expression signature and response to the use of leucovorin, f
luorouracil and oxaliplatin in colorectal cancer patients.??Clin Transl Oncol??
2011 Jun[]
Overfull \hbox (250.78088pt too wide) in paragraph at lines 680--680
[] \T1/zi4/m/n/10 Title: Gene expression signature and response to the use of
leucovorin, fluorouracil and oxaliplatin in colorectal cancer patients.[]
[16] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def)
Overfull \hbox (701.78088pt too wide) in paragraph at lines 759--759
[] \T1/zi4/m/n/10 Experimenter name: Jorissen RN, Gibbs P, Christie M, Prakas
h S et al.??Metastasis-Associated Gene Expression Changes Predict Poor Outcomes
in Patients with Dukes Stage B and C Colorectal Cancer.??Clin Cancer Res??2009
Dec 15[]
Overfull \hbox (245.78088pt too wide) in paragraph at lines 762--762
[] \T1/zi4/m/n/10 Title: Metastasis-Associated Gene Expression Changes Predic
t Poor Outcomes in Patients with Dukes Stage B and C Colorectal Cancer.[]
[17] [18]
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[] \T1/zi4/m/n/10 Experimenter name: Reid JF, Gariboldi M, Sokolova V, Capobi
anco P et al.??Integrative approach for prioritizing cancer genes in sporadic c
olon cancer.??Genes Chromosomes Cancer??2009 Nov[]
Overfull \hbox (17.78088pt too wide) in paragraph at lines 900--900
[] \T1/zi4/m/n/10 Title: Integrative approach for prioritizing cancer genes i
n sporadic colon cancer.[]
[20] [21]
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[] \T1/zi4/m/n/10 Experimenter name: Smith JJ, Deane NG, Wu F, Merchant NB et
al.??Experimentally derived metastasis gene expression profile predicts recurr
ence and death in patients with colon cancer.??Gastroenterology??2010 Mar[]
Overfull \hbox (222.78088pt too wide) in paragraph at lines 1046--1046
[] \T1/zi4/m/n/10 Title: Experimentally derived metastasis gene expression pr
ofile predicts recurrence and death in patients with colon cancer.[]
[23] [24]
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[] \T1/zi4/m/n/10 Experimenter name: Smith JJ, Deane NG, Wu F, Merchant NB et
al.??Experimentally derived metastasis gene expression profile predicts recurr
ence and death in patients with colon cancer.??Gastroenterology??2010 Mar[]
Overfull \hbox (222.78088pt too wide) in paragraph at lines 1210--1210
[] \T1/zi4/m/n/10 Title: Experimentally derived metastasis gene expression pr
ofile predicts recurrence and death in patients with colon cancer.[]
[27]
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(/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [29]
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[] \T1/zi4/m/n/10 Experimenter name: Smith JJ, Deane NG, Wu F, Merchant NB et
al.??Experimentally derived metastasis gene expression profile predicts recurr
ence and death in patients with colon cancer.??Gastroenterology??2010 Mar[]
Overfull \hbox (222.78088pt too wide) in paragraph at lines 1370--1370
[] \T1/zi4/m/n/10 Title: Experimentally derived metastasis gene expression pr
ofile predicts recurrence and death in patients with colon cancer.[]
[30] [31] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [32]
Overfull \hbox (601.78088pt too wide) in paragraph at lines 1523--1523
[] \T1/zi4/m/n/10 Experimenter name: Matsuyama T, Ishikawa T, Mogushi K, Yosh
ida T et al.??MUC12 mRNA expression is an independent marker of prognosis in st
age II and stage III colorectal cancer.??Int J Cancer??2010 Nov 15[]
Overfull \hbox (150.78088pt too wide) in paragraph at lines 1526--1526
[] \T1/zi4/m/n/10 Title: MUC12 mRNA expression is an independent marker of pr
ognosis in stage II and stage III colorectal cancer.[]
[33] [34] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def)
Overfull \hbox (108.78088pt too wide) in paragraph at lines 1629--1629
[] \T1/zi4/m/n/10 Experimenter name: EXpression Project for Oncology, Interna
tional Genomics Consortium, www.intgen.org[]
[35] [36] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def)
Overfull \hbox (8.67705pt too wide) in paragraph at lines 1746--1747
[]\T1/ptm/m/n/10 This study aimed to iden-tify a novel biomarker or a tar-get o
f treat-ment for col-orec-tal can-cer (CRC).The
[37]
Overfull \hbox (479.78088pt too wide) in paragraph at lines 1759--1759
[] \T1/zi4/m/n/10 Experimenter name: Tsukamoto S, Ishikawa T, Iida S, Ishigur
o M et al.??Clinical significance of osteoprotegerin expression in human colore
ctal cancer.??Clin Cancer Res2011 Apr 15[]
Overfull \hbox (33.78088pt too wide) in paragraph at lines 1762--1762
[] \T1/zi4/m/n/10 Title: Clinical significance of osteoprotegerin expression
in human colorectal cancer.[]
[38] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [39]
Overfull \hbox (742.78088pt too wide) in paragraph at lines 1861--1861
[] \T1/zi4/m/n/10 Experimenter name: Kogo R, Shimamura T, Mimori K, Kawahara
K et al.??Long noncoding RNA HOTAIR regulates polycomb-dependent chromatin modi
fication and is associated with poor prognosis in colorectal cancers.??Cancer R
es??2011 Oct 15[]
Overfull \hbox (320.78088pt too wide) in paragraph at lines 1864--1864
[] \T1/zi4/m/n/10 Title: Long noncoding RNA HOTAIR regulates polycomb-depende
nt chromatin modification and is associated with poor prognosis in colorectal c
ancers.[]
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[41] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [42]
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[] \T1/zi4/m/n/10 Experimenter name: Sveen A,????esen TH,??Rognum TO,??Lothe
RA,??Skotheim RI. Transcriptome instability in colorectal cancer identified by
exon microarray analyses: Associations with splicing factor expression levels a
nd patient survival. Genome Med 2011 May 27[]
Overfull \hbox (428.78088pt too wide) in paragraph at lines 1991--1991
[] \T1/zi4/m/n/10 Title: Transcriptome instability in colorectal cancer ident
ified by exon microarray analyses: Associations with splicing factor expression
levels and patient survival.[]
[43] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [44]
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[] \T1/zi4/m/n/10 Experimenter name: Sveen A, Agesen TH, Nesbakken A, Rognum
TO et al.??Transcriptome instability in colorectal cancer identified by exon mi
croarray analyses: Associations with splicing factor expression levels and pati
ent survival.Genome Med??2011 May 27[]
Overfull \hbox (428.78088pt too wide) in paragraph at lines 2114--2114
[] \T1/zi4/m/n/10 Title: Transcriptome instability in colorectal cancer ident
ified by exon microarray analyses: Associations with splicing factor expression
levels and patient survival.[]
[45] [46] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [47]
Overfull \hbox (731.78088pt too wide) in paragraph at lines 2234--2234
[] \T1/zi4/m/n/10 Experimenter name: Bandr??E,??Malumbres R,??Cubedo E,??Sola
J,??Garc??Foncillas J,??Labarga A. A gene signature of 8 genes could identify
the risk of recurrence and progression in Dukes\TS1/zi4/m/n/10 ' \T1/zi4/m/n/10
B colon cancer patients. Oncol Rep 2007 May[]
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[] \T1/zi4/m/n/10 Laboratory: Bandr??E,??Malumbres R,??Cubedo E,??Sola J,??Ga
rc??Foncillas J,??Labarga A 2005[]
Overfull \hbox (207.78088pt too wide) in paragraph at lines 2237--2237
[] \T1/zi4/m/n/10 Title: A gene signature of 8 genes could identify the risk
of recurrence and progression in Dukes\TS1/zi4/m/n/10 ' \T1/zi4/m/n/10 B colon
cancer patients.[]
[48]
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[] \T1/zi4/m/n/10 Experimenter name: Vilar E,??Gruber SB,??Rennert G,??Bartni
k CM,??Stenzel SL,??Iniesta MD,??Raskin L,Mukherjee B,??Ahn J,??Moreno V,??Morg
an MA. MRE11 deficiency increases sensitivity to poly(ADP-ribose) polymerase in
hibition in microsatellite unstable colorectal cancers. Cancer Res 2011 Apr 1[]
Overfull \hbox (269.78088pt too wide) in paragraph at lines 2379--2379
[] \T1/zi4/m/n/10 Title: MRE11 deficiency increases sensitivity to poly(ADP-r
ibose) polymerase inhibition in microsatellite unstable colorectal cancers.[]
[51] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [52]
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[] \T1/zi4/m/n/10 Experimenter name: Vilar E,??Gruber SB,??Rennert G,??Bartni
k CM,??Stenzel SL,??Iniesta MD,??Raskin L,Mukherjee B,??Ahn J,??Moreno V,??Morg
an MA. MRE11 deficiency increases sensitivity to poly(ADP-ribose) polymerase in
hibition in microsatellite unstable colorectal cancers. Cancer Res 2011 Apr 1[]
Overfull \hbox (269.78088pt too wide) in paragraph at lines 2473--2473
[] \T1/zi4/m/n/10 Title: MRE11 deficiency increases sensitivity to poly(ADP-r
ibose) polymerase inhibition in microsatellite unstable colorectal cancers.[]
[53] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def)
Overfull \hbox (428.78088pt too wide) in paragraph at lines 2564--2564
[] \T1/zi4/m/n/10 Experimenter name: Birnbaum DJ, Laibe S, Ferrari A, Lagarde
A et al.??Expression Profiles in Stage II Colon Cancer According to APC Gene S
tatus.??Transl Oncol??2012 Apr[]
[54]
Overfull \hbox (5.78088pt too wide) in paragraph at lines 2567--2567
[] \T1/zi4/m/n/10 Title: Expression Profiles in Stage II Colon Cancer Accordi
ng to APC Gene Status.[]
[55]
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[] \T1/zi4/m/n/10 Experimenter name: Bernal M,??Garc??Alcalde F,??Concha ????
Blanco A,??Garrido F,??Ruiz-Cabello F[]
Overfull \hbox (74.78088pt too wide) in paragraph at lines 2703--2703
[] \T1/zi4/m/n/10 Laboratory: Bernal M,??Garc??Alcalde F,??Concha ????Blanco
A,??Garrido F,??Ruiz-Cabello F 2011[]
Overfull \hbox (240.78088pt too wide) in paragraph at lines 2705--2705
[] \T1/zi4/m/n/10 Title: Genome-wide profiling characterizes CRCs with geneti
c instability and specific routes to HLA class I loss and immunoescape[]
[57] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [58]
Overfull \hbox (501.78088pt too wide) in paragraph at lines 2788--2788
[] \T1/zi4/m/n/10 Experimenter name: Tsuji S, Midorikawa Y, Takahashi T, Yagi
K et al.??Potential responders to FOLFOX therapy for colorectal cancer by Rand
om Forests analysis.??Br J Cancer??2012 Jan 3[]
Overfull \hbox (75.78088pt too wide) in paragraph at lines 2791--2791
[] \T1/zi4/m/n/10 Title: Potential responders to FOLFOX therapy for colorecta
l cancer by Random Forests analysis.[]
[59] [60] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [61]
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[] \T1/zi4/m/n/10 Experimenter name: Bianchini M, Levy E, Zucchini C, Pinski
V et al.??Comparative study of gene expression by cDNA microarray in human colo
rectal cancer tissues and normal mucosa.??Int J Oncol??2006 Jul[]
Overfull \hbox (176.78088pt too wide) in paragraph at lines 2929--2929
[] \T1/zi4/m/n/10 Title: Comparative study of gene expression by cDNA microar
ray in human colorectal cancer tissues and normal mucosa.[]
[62]
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[] \T1/zi4/m/n/10 Experimenter name: de Sousa E Melo F, Colak S, Buikhuisen J
, Koster J et al.??Methylation of cancer-stem-cell-associated Wnt target genes
predicts poor prognosis in colorectal cancer patients.??Cell Stem Cell??2011 No
v 4[]
Overfull \hbox (83.78088pt too wide) in paragraph at lines 3055--3055
[] \T1/zi4/m/n/10 Title: Mutations in the Ras-Raf Axis underlie the prognosti
c value of CD133 in colorectal cancer.[]
[64] [65] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [66]
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[] \T1/zi4/m/n/10 Experimenter name: Marisa L, de Reyni??A, Duval A, Selves J
et al.??Gene expression classification of colon cancer into molecular subtypes
: characterization, validation, and prognostic value.??PLoS Med??2013[]
Overfull \hbox (248.78088pt too wide) in paragraph at lines 3165--3165
[] \T1/zi4/m/n/10 Title: Gene expression classification of colon cancer into
molecular subtypes: characterization, validation, and prognostic value.[]
[67] [68] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [69]
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[] \T1/zi4/m/n/10 Experimenter name: Graudens E, Boulanger V, Mollard C, Mari
age-Samson R et al.??Deciphering cellular states of innate tumor drug responses
.??Genome Biol??2006[]
[70] [71] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [72]
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[] \T1/zi4/m/n/10 Experimenter name: Laiho P, Kokko A, Vanharanta S, Salovaar
a R et al.??Serrated carcinomas form a subclass of colorectal cancer with disti
nct molecular basis.??Oncogene2007 Jan 11[]
Overfull \hbox (70.78088pt too wide) in paragraph at lines 3465--3465
[] \T1/zi4/m/n/10 Title: Serrated carcinomas form a subclass of colorectal ca
ncer with distinct molecular basis.[]
[73] [74] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [75]
Overfull \hbox (425.78088pt too wide) in paragraph at lines 3588--3588
[] \T1/zi4/m/n/10 Experimenter name: Watanabe T, Kobunai T, Sakamoto E, Yamam
oto Y et al.??Gene expression signature for recurrence in stage III colorectal
cancers.??Cancer??2009 Jan 15[]
Overfull \hbox (2.78088pt too wide) in paragraph at lines 3591--3591
[] \T1/zi4/m/n/10 Title: Gene expression signature for recurrence in stage II
I colorectal cancers.[]
[76] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def)
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[] \T1/zi4/m/n/10 Experimenter name: Profiling project of a panel of tubular
adenoma and serrated adenoma patient material collected in the Academic Medical
Center[]
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[] \T1/zi4/m/n/10 Laboratory: Medema JP,??de Sousa E Melo F,??Vermeulen L,??J
ansen M,??Dekker E,??Van Noesel C,??Fessler E 2013[]
[77] [78] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def)
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[] \T1/zi4/m/n/10 Experimenter name: Comprehensive molecular characterization
of human colon and rectal cancer. Nature 2012, 487:330-337[]
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[] \T1/zi4/m/n/10 Title: Comprehensive molecular characterization of human co
lon and rectal cancer.[]
[79] [80]
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[] \T1/zi4/m/n/10 Experimenter name: Comprehensive molecular characterization
of human colon and rectal cancer. Nature 2012, 487:330-337[]
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[] \T1/zi4/m/n/10 Title: Comprehensive molecular characterization of human co
lon and rectal cancer.[]
[84]
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[] \T1/zi4/m/n/10 Experimenter name: Comprehensive molecular characterization
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[] \T1/zi4/m/n/10 Title: Comprehensive molecular characterization of human co
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[89]
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[] \T1/zi4/m/n/10 Experimenter name: Comprehensive molecular characterization
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[] \T1/zi4/m/n/10 Title: Comprehensive molecular characterization of human co
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[92] [93]
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[] \T1/zi4/m/n/10 Experimenter name: Auman JT, Church R, Lee SY, Watson MA, F
leshman JW, Mcleod HL.??Celecoxib pre-treatment in human colorectal adenocarcin
oma patients is associated with gene expression alterations suggestive of dimin
ished cellular proliferation.??Eur J Cancer??2008 Aug[]
Overfull \hbox (444.78088pt too wide) in paragraph at lines 99--99
[] \T1/zi4/m/n/10 Title: Celecoxib pre-treatment in human colorectal adenocar
cinoma patients is associated with gene expression alterations suggestive of di
minished cellular proliferation.[]
(/usr/share/texlive/texmf-dist/tex/latex/inconsolata/ts1zi4.fd) [3] [4]
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[] \T1/zi4/m/n/10 Experimenter name: Lips EH, van Eijk R, de Graaf EJ, Oostin
g J et al.??Integrating chromosomal aberrations and gene expression profiles to
dissect rectal tumorigenesis.BMC Cancer??2008 Oct 29[]
Overfull \hbox (121.78088pt too wide) in paragraph at lines 229--229
[] \T1/zi4/m/n/10 Title: Integrating chromosomal aberrations and gene express
ion profiles to dissect rectal tumorigenesis.[]
[6] [7] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def)
Overfull \hbox (633.78088pt too wide) in paragraph at lines 341--341
[] \T1/zi4/m/n/10 Experimenter name: Staub E, Groene J, Heinze M, Mennerich D
et al.??An expression module of WIPF1-coexpressed genes identifies patients wi
th favorable prognosis in three tumor types.??J Mol Med (Berl)??2009 Jun[]
Overfull \hbox (202.78088pt too wide) in paragraph at lines 344--344
[] \T1/zi4/m/n/10 Title: An expression module of WIPF1-coexpressed genes iden
tifies patients with favorable prognosis in three tumor types.[]
[8] [9]
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\T1/ptm/m/n/10 stream ef-fects of dif-fer-en-tial gene ex-pres-sion.DNA mi-croa
r-ray data on 89 MSI and 140 microsatellite-
[11]
Overfull \hbox (714.78088pt too wide) in paragraph at lines 505--505
[] \T1/zi4/m/n/10 Experimenter name: Jorissen RN, Lipton L, Gibbs P, Chapman
M et al.??DNA copy-number alterations underlie gene expression differences betw
een microsatellite stable and unstable colorectal cancers.??Clin Cancer Res??20
08 Dec 15[]
Overfull \hbox (268.78088pt too wide) in paragraph at lines 508--508
[] \T1/zi4/m/n/10 Title: DNA copy-number alterations underlie gene expression
differences between microsatellite stable and unstable colorectal cancers.[]
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r-ray data on 89 MSI and 140 microsatellite-
[13]
Overfull \hbox (696.78088pt too wide) in paragraph at lines 591--591
[] \T1/zi4/m/n/10 Experimenter name: Jorissen RN, Lipton L, Gibbs P, Chapman
M et al. DNA copy-number alterations underlie gene expression differences betwe
en microsatellite stable and unstable colorectal cancers. Clin Cancer Res 2008
Dec 15[]
Overfull \hbox (268.78088pt too wide) in paragraph at lines 594--594
[] \T1/zi4/m/n/10 Title: DNA copy-number alterations underlie gene expression
differences between microsatellite stable and unstable colorectal cancers.[]
[14] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [15]
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[] \T1/zi4/m/n/10 Experimenter name: Watanabe T, Kobunai T, Yamamoto Y, Matsu
da K et al.??Gene expression signature and response to the use of leucovorin, f
luorouracil and oxaliplatin in colorectal cancer patients.??Clin Transl Oncol??
2011 Jun[]
Overfull \hbox (250.78088pt too wide) in paragraph at lines 680--680
[] \T1/zi4/m/n/10 Title: Gene expression signature and response to the use of
leucovorin, fluorouracil and oxaliplatin in colorectal cancer patients.[]
[16] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def)
Overfull \hbox (701.78088pt too wide) in paragraph at lines 759--759
[] \T1/zi4/m/n/10 Experimenter name: Jorissen RN, Gibbs P, Christie M, Prakas
h S et al.??Metastasis-Associated Gene Expression Changes Predict Poor Outcomes
in Patients with Dukes Stage B and C Colorectal Cancer.??Clin Cancer Res??2009
Dec 15[]
Overfull \hbox (245.78088pt too wide) in paragraph at lines 762--762
[] \T1/zi4/m/n/10 Title: Metastasis-Associated Gene Expression Changes Predic
t Poor Outcomes in Patients with Dukes Stage B and C Colorectal Cancer.[]
[17] [18]
Underfull \vbox (badness 10000) has occurred while \output is active [19]
(/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def)
Overfull \hbox (519.78088pt too wide) in paragraph at lines 897--897
[] \T1/zi4/m/n/10 Experimenter name: Reid JF, Gariboldi M, Sokolova V, Capobi
anco P et al.??Integrative approach for prioritizing cancer genes in sporadic c
olon cancer.??Genes Chromosomes Cancer??2009 Nov[]
Overfull \hbox (17.78088pt too wide) in paragraph at lines 900--900
[] \T1/zi4/m/n/10 Title: Integrative approach for prioritizing cancer genes i
n sporadic colon cancer.[]
[20] [21]
Underfull \vbox (badness 10000) has occurred while \output is active [22]
(/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def)
Overfull \hbox (641.78088pt too wide) in paragraph at lines 1043--1043
[] \T1/zi4/m/n/10 Experimenter name: Smith JJ, Deane NG, Wu F, Merchant NB et
al.??Experimentally derived metastasis gene expression profile predicts recurr
ence and death in patients with colon cancer.??Gastroenterology??2010 Mar[]
Overfull \hbox (222.78088pt too wide) in paragraph at lines 1046--1046
[] \T1/zi4/m/n/10 Title: Experimentally derived metastasis gene expression pr
ofile predicts recurrence and death in patients with colon cancer.[]
[23] [24]
Underfull \vbox (badness 10000) has occurred while \output is active [25]
(/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [26]
Overfull \hbox (641.78088pt too wide) in paragraph at lines 1207--1207
[] \T1/zi4/m/n/10 Experimenter name: Smith JJ, Deane NG, Wu F, Merchant NB et
al.??Experimentally derived metastasis gene expression profile predicts recurr
ence and death in patients with colon cancer.??Gastroenterology??2010 Mar[]
Overfull \hbox (222.78088pt too wide) in paragraph at lines 1210--1210
[] \T1/zi4/m/n/10 Title: Experimentally derived metastasis gene expression pr
ofile predicts recurrence and death in patients with colon cancer.[]
[27]
Underfull \vbox (badness 10000) has occurred while \output is active [28]
(/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [29]
Overfull \hbox (641.78088pt too wide) in paragraph at lines 1367--1367
[] \T1/zi4/m/n/10 Experimenter name: Smith JJ, Deane NG, Wu F, Merchant NB et
al.??Experimentally derived metastasis gene expression profile predicts recurr
ence and death in patients with colon cancer.??Gastroenterology??2010 Mar[]
Overfull \hbox (222.78088pt too wide) in paragraph at lines 1370--1370
[] \T1/zi4/m/n/10 Title: Experimentally derived metastasis gene expression pr
ofile predicts recurrence and death in patients with colon cancer.[]
[30] [31] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [32]
Overfull \hbox (601.78088pt too wide) in paragraph at lines 1523--1523
[] \T1/zi4/m/n/10 Experimenter name: Matsuyama T, Ishikawa T, Mogushi K, Yosh
ida T et al.??MUC12 mRNA expression is an independent marker of prognosis in st
age II and stage III colorectal cancer.??Int J Cancer??2010 Nov 15[]
Overfull \hbox (150.78088pt too wide) in paragraph at lines 1526--1526
[] \T1/zi4/m/n/10 Title: MUC12 mRNA expression is an independent marker of pr
ognosis in stage II and stage III colorectal cancer.[]
[33] [34] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def)
Overfull \hbox (108.78088pt too wide) in paragraph at lines 1629--1629
[] \T1/zi4/m/n/10 Experimenter name: EXpression Project for Oncology, Interna
tional Genomics Consortium, www.intgen.org[]
[35] [36] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def)
Overfull \hbox (8.67705pt too wide) in paragraph at lines 1746--1747
[]\T1/ptm/m/n/10 This study aimed to iden-tify a novel biomarker or a tar-get o
f treat-ment for col-orec-tal can-cer (CRC).The
[37]
Overfull \hbox (479.78088pt too wide) in paragraph at lines 1759--1759
[] \T1/zi4/m/n/10 Experimenter name: Tsukamoto S, Ishikawa T, Iida S, Ishigur
o M et al.??Clinical significance of osteoprotegerin expression in human colore
ctal cancer.??Clin Cancer Res2011 Apr 15[]
Overfull \hbox (33.78088pt too wide) in paragraph at lines 1762--1762
[] \T1/zi4/m/n/10 Title: Clinical significance of osteoprotegerin expression
in human colorectal cancer.[]
[38] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [39]
Overfull \hbox (742.78088pt too wide) in paragraph at lines 1861--1861
[] \T1/zi4/m/n/10 Experimenter name: Kogo R, Shimamura T, Mimori K, Kawahara
K et al.??Long noncoding RNA HOTAIR regulates polycomb-dependent chromatin modi
fication and is associated with poor prognosis in colorectal cancers.??Cancer R
es??2011 Oct 15[]
Overfull \hbox (320.78088pt too wide) in paragraph at lines 1864--1864
[] \T1/zi4/m/n/10 Title: Long noncoding RNA HOTAIR regulates polycomb-depende
nt chromatin modification and is associated with poor prognosis in colorectal c
ancers.[]
Underfull \vbox (badness 1881) has occurred while \output is active [40]
[41] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [42]
Overfull \hbox (881.78088pt too wide) in paragraph at lines 1988--1988
[] \T1/zi4/m/n/10 Experimenter name: Sveen A,????esen TH,??Rognum TO,??Lothe
RA,??Skotheim RI. Transcriptome instability in colorectal cancer identified by
exon microarray analyses: Associations with splicing factor expression levels a
nd patient survival. Genome Med 2011 May 27[]
Overfull \hbox (428.78088pt too wide) in paragraph at lines 1991--1991
[] \T1/zi4/m/n/10 Title: Transcriptome instability in colorectal cancer ident
ified by exon microarray analyses: Associations with splicing factor expression
levels and patient survival.[]
[43] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [44]
Overfull \hbox (845.78088pt too wide) in paragraph at lines 2111--2111
[] \T1/zi4/m/n/10 Experimenter name: Sveen A, Agesen TH, Nesbakken A, Rognum
TO et al.??Transcriptome instability in colorectal cancer identified by exon mi
croarray analyses: Associations with splicing factor expression levels and pati
ent survival.Genome Med??2011 May 27[]
Overfull \hbox (428.78088pt too wide) in paragraph at lines 2114--2114
[] \T1/zi4/m/n/10 Title: Transcriptome instability in colorectal cancer ident
ified by exon microarray analyses: Associations with splicing factor expression
levels and patient survival.[]
[45] [46] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [47]
Overfull \hbox (731.78088pt too wide) in paragraph at lines 2234--2234
[] \T1/zi4/m/n/10 Experimenter name: Bandr??E,??Malumbres R,??Cubedo E,??Sola
J,??Garc??Foncillas J,??Labarga A. A gene signature of 8 genes could identify
the risk of recurrence and progression in Dukes\TS1/zi4/m/n/10 ' \T1/zi4/m/n/10
B colon cancer patients. Oncol Rep 2007 May[]
Overfull \hbox (60.78088pt too wide) in paragraph at lines 2235--2235
[] \T1/zi4/m/n/10 Laboratory: Bandr??E,??Malumbres R,??Cubedo E,??Sola J,??Ga
rc??Foncillas J,??Labarga A 2005[]
Overfull \hbox (207.78088pt too wide) in paragraph at lines 2237--2237
[] \T1/zi4/m/n/10 Title: A gene signature of 8 genes could identify the risk
of recurrence and progression in Dukes\TS1/zi4/m/n/10 ' \T1/zi4/m/n/10 B colon
cancer patients.[]
[48]
Underfull \vbox (badness 10000) has occurred while \output is active [49]
(/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [50]
Overfull \hbox (1051.78088pt too wide) in paragraph at lines 2376--2376
[] \T1/zi4/m/n/10 Experimenter name: Vilar E,??Gruber SB,??Rennert G,??Bartni
k CM,??Stenzel SL,??Iniesta MD,??Raskin L,Mukherjee B,??Ahn J,??Moreno V,??Morg
an MA. MRE11 deficiency increases sensitivity to poly(ADP-ribose) polymerase in
hibition in microsatellite unstable colorectal cancers. Cancer Res 2011 Apr 1[]
Overfull \hbox (269.78088pt too wide) in paragraph at lines 2379--2379
[] \T1/zi4/m/n/10 Title: MRE11 deficiency increases sensitivity to poly(ADP-r
ibose) polymerase inhibition in microsatellite unstable colorectal cancers.[]
[51] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [52]
Overfull \hbox (1051.78088pt too wide) in paragraph at lines 2470--2470
[] \T1/zi4/m/n/10 Experimenter name: Vilar E,??Gruber SB,??Rennert G,??Bartni
k CM,??Stenzel SL,??Iniesta MD,??Raskin L,Mukherjee B,??Ahn J,??Moreno V,??Morg
an MA. MRE11 deficiency increases sensitivity to poly(ADP-ribose) polymerase in
hibition in microsatellite unstable colorectal cancers. Cancer Res 2011 Apr 1[]
Overfull \hbox (269.78088pt too wide) in paragraph at lines 2473--2473
[] \T1/zi4/m/n/10 Title: MRE11 deficiency increases sensitivity to poly(ADP-r
ibose) polymerase inhibition in microsatellite unstable colorectal cancers.[]
[53] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def)
Overfull \hbox (428.78088pt too wide) in paragraph at lines 2564--2564
[] \T1/zi4/m/n/10 Experimenter name: Birnbaum DJ, Laibe S, Ferrari A, Lagarde
A et al.??Expression Profiles in Stage II Colon Cancer According to APC Gene S
tatus.??Transl Oncol??2012 Apr[]
[54]
Overfull \hbox (5.78088pt too wide) in paragraph at lines 2567--2567
[] \T1/zi4/m/n/10 Title: Expression Profiles in Stage II Colon Cancer Accordi
ng to APC Gene Status.[]
[55]
Underfull \vbox (badness 10000) has occurred while \output is active [56]
(/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def)
Overfull \hbox (84.78088pt too wide) in paragraph at lines 2702--2702
[] \T1/zi4/m/n/10 Experimenter name: Bernal M,??Garc??Alcalde F,??Concha ????
Blanco A,??Garrido F,??Ruiz-Cabello F[]
Overfull \hbox (74.78088pt too wide) in paragraph at lines 2703--2703
[] \T1/zi4/m/n/10 Laboratory: Bernal M,??Garc??Alcalde F,??Concha ????Blanco
A,??Garrido F,??Ruiz-Cabello F 2011[]
Overfull \hbox (240.78088pt too wide) in paragraph at lines 2705--2705
[] \T1/zi4/m/n/10 Title: Genome-wide profiling characterizes CRCs with geneti
c instability and specific routes to HLA class I loss and immunoescape[]
[57] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [58]
Overfull \hbox (501.78088pt too wide) in paragraph at lines 2788--2788
[] \T1/zi4/m/n/10 Experimenter name: Tsuji S, Midorikawa Y, Takahashi T, Yagi
K et al.??Potential responders to FOLFOX therapy for colorectal cancer by Rand
om Forests analysis.??Br J Cancer??2012 Jan 3[]
Overfull \hbox (75.78088pt too wide) in paragraph at lines 2791--2791
[] \T1/zi4/m/n/10 Title: Potential responders to FOLFOX therapy for colorecta
l cancer by Random Forests analysis.[]
[59] [60] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [61]
Overfull \hbox (588.78088pt too wide) in paragraph at lines 2926--2926
[] \T1/zi4/m/n/10 Experimenter name: Bianchini M, Levy E, Zucchini C, Pinski
V et al.??Comparative study of gene expression by cDNA microarray in human colo
rectal cancer tissues and normal mucosa.??Int J Oncol??2006 Jul[]
Overfull \hbox (176.78088pt too wide) in paragraph at lines 2929--2929
[] \T1/zi4/m/n/10 Title: Comparative study of gene expression by cDNA microar
ray in human colorectal cancer tissues and normal mucosa.[]
[62]
Underfull \vbox (badness 10000) has occurred while \output is active [63]
(/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def)
Overfull \hbox (682.78088pt too wide) in paragraph at lines 3052--3052
[] \T1/zi4/m/n/10 Experimenter name: de Sousa E Melo F, Colak S, Buikhuisen J
, Koster J et al.??Methylation of cancer-stem-cell-associated Wnt target genes
predicts poor prognosis in colorectal cancer patients.??Cell Stem Cell??2011 No
v 4[]
Overfull \hbox (83.78088pt too wide) in paragraph at lines 3055--3055
[] \T1/zi4/m/n/10 Title: Mutations in the Ras-Raf Axis underlie the prognosti
c value of CD133 in colorectal cancer.[]
[64] [65] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [66]
Overfull \hbox (622.78088pt too wide) in paragraph at lines 3162--3162
[] \T1/zi4/m/n/10 Experimenter name: Marisa L, de Reyni??A, Duval A, Selves J
et al.??Gene expression classification of colon cancer into molecular subtypes
: characterization, validation, and prognostic value.??PLoS Med??2013[]
Overfull \hbox (248.78088pt too wide) in paragraph at lines 3165--3165
[] \T1/zi4/m/n/10 Title: Gene expression classification of colon cancer into
molecular subtypes: characterization, validation, and prognostic value.[]
[67] [68] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [69]
Overfull \hbox (383.78088pt too wide) in paragraph at lines 3316--3316
[] \T1/zi4/m/n/10 Experimenter name: Graudens E, Boulanger V, Mollard C, Mari
age-Samson R et al.??Deciphering cellular states of innate tumor drug responses
.??Genome Biol??2006[]
[70] [71] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [72]
Overfull \hbox (483.78088pt too wide) in paragraph at lines 3462--3462
[] \T1/zi4/m/n/10 Experimenter name: Laiho P, Kokko A, Vanharanta S, Salovaar
a R et al.??Serrated carcinomas form a subclass of colorectal cancer with disti
nct molecular basis.??Oncogene2007 Jan 11[]
Overfull \hbox (70.78088pt too wide) in paragraph at lines 3465--3465
[] \T1/zi4/m/n/10 Title: Serrated carcinomas form a subclass of colorectal ca
ncer with distinct molecular basis.[]
[73] [74] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def) [75]
Overfull \hbox (425.78088pt too wide) in paragraph at lines 3588--3588
[] \T1/zi4/m/n/10 Experimenter name: Watanabe T, Kobunai T, Sakamoto E, Yamam
oto Y et al.??Gene expression signature for recurrence in stage III colorectal
cancers.??Cancer??2009 Jan 15[]
Overfull \hbox (2.78088pt too wide) in paragraph at lines 3591--3591
[] \T1/zi4/m/n/10 Title: Gene expression signature for recurrence in stage II
I colorectal cancers.[]
[76] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def)
Overfull \hbox (317.78088pt too wide) in paragraph at lines 3694--3694
[] \T1/zi4/m/n/10 Experimenter name: Profiling project of a panel of tubular
adenoma and serrated adenoma patient material collected in the Academic Medical
Center[]
Overfull \hbox (144.78088pt too wide) in paragraph at lines 3695--3695
[] \T1/zi4/m/n/10 Laboratory: Medema JP,??de Sousa E Melo F,??Vermeulen L,??J
ansen M,??Dekker E,??Van Noesel C,??Fessler E 2013[]
[77] [78] (/usr/share/texlive/texmf-dist/tex/latex/base/utf8.def)
Overfull \hbox (189.78088pt too wide) in paragraph at lines 3772--3772
[] \T1/zi4/m/n/10 Experimenter name: Comprehensive molecular characterization
of human colon and rectal cancer. Nature 2012, 487:330-337[]
Overfull \hbox (8.78088pt too wide) in paragraph at lines 3775--3775
[] \T1/zi4/m/n/10 Title: Comprehensive molecular characterization of human co
lon and rectal cancer.[]
[79] [80]
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[] \T1/zi4/m/n/10 Experimenter name: Comprehensive molecular characterization
of human colon and rectal cancer. Nature 2012, 487:330-337[]
Overfull \hbox (8.78088pt too wide) in paragraph at lines 4008--4008
[] \T1/zi4/m/n/10 Title: Comprehensive molecular characterization of human co
lon and rectal cancer.[]
[84]
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[] \T1/zi4/m/n/10 Experimenter name: Comprehensive molecular characterization
of human colon and rectal cancer. Nature 2012, 487:330-337[]
Overfull \hbox (8.78088pt too wide) in paragraph at lines 4257--4257
[] \T1/zi4/m/n/10 Title: Comprehensive molecular characterization of human co
lon and rectal cancer.[]
[89]
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[] \T1/zi4/m/n/10 Experimenter name: Comprehensive molecular characterization
of human colon and rectal cancer. Nature 2012, 487:330-337[]
Overfull \hbox (8.78088pt too wide) in paragraph at lines 4426--4426
[] \T1/zi4/m/n/10 Title: Comprehensive molecular characterization of human co
lon and rectal cancer.[]
[92] [93]
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* creating vignettes ... ERROR
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union, unique, unsplit, which, which.max, which.min
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Data sets in package ‘curatedCRCData’:
GSE11237_eset Celecoxib pre-treatment in human colorectal
adenocarcinoma patients is associated with gene
expression alterations suggestive of diminished
cellular proliferation.
GSE12225.GPL3676_eset Integrating chromosomal aberrations and gene
expression profiles to dissect rectal
tumorigenesis.
GSE12945_eset An expression module of WIPF1-coexpressed genes
identifies patients with favorable prognosis in
three tumor types.
GSE13067_eset DNA copy-number alterations underlie gene
expression differences between microsatellite
stable and unstable colorectal cancers.
GSE13294_eset DNA copy-number alterations underlie gene
expression differences between microsatellite
stable and unstable colorectal cancers.
GSE14095_eset Gene expression signature and response to the
use of leucovorin, fluorouracil and oxaliplatin
in colorectal cancer patients.
GSE14333_eset Metastasis-Associated Gene Expression Changes
Predict Poor Outcomes in Patients with Dukes
Stage B and C Colorectal Cancer.
GSE16125.GPL5175_eset Integrative approach for prioritizing cancer
genes in sporadic colon cancer.
GSE17536_eset Experimentally derived metastasis gene
expression profile predicts recurrence and
death in patients with colon cancer.
GSE17537_eset Experimentally derived metastasis gene
expression profile predicts recurrence and
death in patients with colon cancer.
GSE17538.GPL570_eset Experimentally derived metastasis gene
expression profile predicts recurrence and
death in patients with colon cancer.
GSE18105_eset MUC12 mRNA expression is an independent marker
of prognosis in stage II and stage III
colorectal cancer.
GSE2109_eset Expression Project for Oncology (expO)
GSE21510_eset Clinical significance of osteoprotegerin
expression in human colorectal cancer.
GSE21815_eset Long noncoding RNA HOTAIR regulates
polycomb-dependent chromatin modification and
is associated with poor prognosis in colorectal
cancers.
GSE24549.GPL5175_eset Transcriptome instability in colorectal cancer
identified by exon microarray analyses:
Associations with splicing factor expression
levels and patient survival.
GSE24550.GPL5175_eset Transcriptome instability in colorectal cancer
identified by exon microarray analyses:
Associations with splicing factor expression
levels and patient survival.
GSE2630_eset A gene signature of 8 genes could identify the
risk of recurrence and progression in Dukes' B
colon cancer patients.
GSE26682.GPL570_eset MRE11 deficiency increases sensitivity to
poly(ADP-ribose) polymerase inhibition in
microsatellite unstable colorectal cancers.
GSE26682.GPL96_eset MRE11 deficiency increases sensitivity to
poly(ADP-ribose) polymerase inhibition in
microsatellite unstable colorectal cancers.
GSE26906_eset Expression Profiles in Stage II Colon Cancer
According to APC Gene Status.
GSE27544_eset Genome-wide profiling characterizes CRCs with
genetic instability and specific routes to HLA
class I loss and immunoescape
GSE28702_eset Potential responders to FOLFOX therapy for
colorectal cancer by Random Forests analysis.
GSE3294_eset Comparative study of gene expression by cDNA
microarray in human colorectal cancer tissues
and normal mucosa.
GSE33113_eset Mutations in the Ras-Raf Axis underlie the
prognostic value of CD133 in colorectal cancer.
GSE39582_eset Gene expression classification of colon cancer
into molecular subtypes: characterization,
validation, and prognostic value.
GSE3964_eset Deciphering cellular states of innate tumor
drug responses.
GSE4045_eset Serrated carcinomas form a subclass of
colorectal cancer with distinct molecular
basis.
GSE4526_eset Gene expression signature for recurrence in
stage III colorectal cancers.
GSE45270_eset AMC tubular and serrated adenomas
TCGA.COAD_eset Comprehensive molecular characterization of
human colon and rectal cancer.
TCGA.READ_eset Comprehensive molecular characterization of
human colon and rectal cancer.
TCGA.RNASeqV2.READ_eset
Comprehensive molecular characterization of
human colon and rectal cancer.
TCGA.RNASeqV2_eset Comprehensive molecular characterization of
human colon and rectal cancer.
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