Lambda Moses
| Snapshot Date: 2025-12-16 13:40 -0500 (Tue, 16 Dec 2025) |
| git_url: https://git.bioconductor.org/packages/BUSpaRse |
| git_branch: devel |
| git_last_commit: 031e018 |
| git_last_commit_date: 2025-10-29 10:53:52 -0500 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2025-12-17 11:35 -0500 (Wed, 17 Dec 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" | 4875 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" | 4589 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 262/2332 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| BUSpaRse 1.25.0 (landing page) Lambda Moses
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
|
To the developers/maintainers of the BUSpaRse package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/BUSpaRse.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: BUSpaRse |
| Version: 1.25.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BUSpaRse |
| StartedAt: 2025-12-16 15:48:34 -0500 (Tue, 16 Dec 2025) |
| EndedAt: 2025-12-16 15:50:21 -0500 (Tue, 16 Dec 2025) |
| EllapsedTime: 107.2 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data BUSpaRse
###
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* checking for file ‘BUSpaRse/DESCRIPTION’ ... OK
* preparing ‘BUSpaRse’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘sparse-matrix.Rmd’ using rmarkdown
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Warning: call dbDisconnect() when finished working with a connection
2025-12-16 15:49:20.975 R[22621:417368330] XType: Using static font registry.
--- finished re-building ‘sparse-matrix.Rmd’
--- re-building ‘tr2g.Rmd’ using rmarkdown
Quitting from tr2g.Rmd:64-69 [unnamed-chunk-5]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `checkDataset()`:
! The given dataset: mmusculus_gene_ensembl, is not valid. Correct dataset names can be obtained with the listDatasets() function.
---
Backtrace:
▆
1. └─BUSpaRse::tr2g_ensembl(...)
2. └─BUSpaRse:::my_useMart(ensembl_version, mart_use, ds_name, host_use)
3. └─biomaRt::useMart(biomart = mart_use, dataset = ds_name, host = host_use)
4. └─biomaRt:::.useMart(...)
5. └─biomaRt::useDataset(mart = mart, dataset = dataset, verbose = verbose)
6. └─biomaRt:::checkDataset(dataset = dataset, mart = mart)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'tr2g.Rmd' failed with diagnostics:
The given dataset: mmusculus_gene_ensembl, is not valid. Correct dataset names can be obtained with the listDatasets() function.
--- failed re-building ‘tr2g.Rmd’
SUMMARY: processing the following file failed:
‘tr2g.Rmd’
Error: Vignette re-building failed.
Execution halted