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This page was generated on 2025-02-04 11:41 -0500 (Tue, 04 Feb 2025).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 24.04.1 LTS)x86_64R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" 4716
palomino7Windows Server 2022 Datacenterx64R Under development (unstable) (2025-01-21 r87610 ucrt) -- "Unsuffered Consequences" 4478
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2025-01-22 r87618) -- "Unsuffered Consequences" 4489
kjohnson3macOS 13.7.1 Venturaarm64R Under development (unstable) (2025-01-20 r87609) -- "Unsuffered Consequences" 4442
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 458/2295HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CRISPRseek 1.47.1  (landing page)
Lihua Julie Zhu
Snapshot Date: 2025-02-03 13:40 -0500 (Mon, 03 Feb 2025)
git_url: https://git.bioconductor.org/packages/CRISPRseek
git_branch: devel
git_last_commit: 08f5391
git_last_commit_date: 2025-01-30 09:24:02 -0500 (Thu, 30 Jan 2025)
nebbiolo1Linux (Ubuntu 24.04.1 LTS) / x86_64  OK    ERROR  skipped
palomino7Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    ERROR    OK  
kjohnson3macOS 13.7.1 Ventura / arm64  OK    OK    ERROR    OK  

BUILD results for CRISPRseek on palomino7

To the developers/maintainers of the CRISPRseek package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/CRISPRseek.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: CRISPRseek
Version: 1.47.1
Command: chmod a+r CRISPRseek -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data CRISPRseek
StartedAt: 2025-02-03 18:18:35 -0500 (Mon, 03 Feb 2025)
EndedAt: 2025-02-03 18:21:38 -0500 (Mon, 03 Feb 2025)
EllapsedTime: 183.6 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r CRISPRseek -R && E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data CRISPRseek
###
##############################################################################
##############################################################################


* checking for file 'CRISPRseek/DESCRIPTION' ... OK
* preparing 'CRISPRseek':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'CRISPRseek.Rmd' using rmarkdown
trying URL 'https://github.com/snugel/cas-offinder/releases/download/3.0.0b3/cas-offinder_windows_x86_64.zip'
Content type 'application/octet-stream' length 49367 bytes (48 KB)
==================================================
downloaded 48 KB

clGetPlatformIDs Failed: -1001

Quitting from lines 249-257 [unnamed-chunk-10] (CRISPRseek.Rmd)
Error: processing vignette 'CRISPRseek.Rmd' failed with diagnostics:
cannot open the connection
--- failed re-building 'CRISPRseek.Rmd'

SUMMARY: processing the following file failed:
  'CRISPRseek.Rmd'

Error: Vignette re-building failed.
Execution halted