| Back to Multiple platform build/check report for BioC 3.23: simplified long |
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This page was generated on 2025-12-16 11:35 -0500 (Tue, 16 Dec 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2025-10-20 r88955) -- "Unsuffered Consequences" | 4875 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2025-11-04 r88984) -- "Unsuffered Consequences" | 4583 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 536/2332 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| DeeDeeExperiment 1.1.2 (landing page) Najla Abassi
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | ERROR | skipped | |||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | OK | ERROR | skipped | skipped | |||||||||
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To the developers/maintainers of the DeeDeeExperiment package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DeeDeeExperiment.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: DeeDeeExperiment |
| Version: 1.1.2 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data DeeDeeExperiment |
| StartedAt: 2025-12-15 16:05:32 -0500 (Mon, 15 Dec 2025) |
| EndedAt: 2025-12-15 16:06:22 -0500 (Mon, 15 Dec 2025) |
| EllapsedTime: 49.5 seconds |
| RetCode: 1 |
| Status: ERROR |
| PackageFile: None |
| PackageFileSize: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data DeeDeeExperiment
###
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* checking for file ‘DeeDeeExperiment/DESCRIPTION’ ... OK
* preparing ‘DeeDeeExperiment’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘DeeDeeExperiment_manual.Rmd’ using rmarkdown
Failed with error: 'object 'load_OrgDb' is not exported by 'namespace:GOSemSim''
Quitting from DeeDeeExperiment_manual.Rmd:467-470 [clusterPro]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `.requirePackage()`:
! unable to load required package 'DOSE'
---
Backtrace:
▆
1. └─utils::head(clusterPro_res$ifng_vs_naive)
2. └─methods (local) `<fn>`(`<list>`, `<stndrdGn>`, `<env>`)
3. └─methods:::.findInheritedMethods(classes, fdef, mtable)
4. └─methods::getClass(cl1, where = where, .Force = TRUE)
5. └─methods::getClassDef(Class, where)
6. └─methods:::.requirePackage(package)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'DeeDeeExperiment_manual.Rmd' failed with diagnostics:
unable to load required package 'DOSE'
--- failed re-building ‘DeeDeeExperiment_manual.Rmd’
--- re-building ‘dde_with_single_cell.Rmd’ using rmarkdown
--- finished re-building ‘dde_with_single_cell.Rmd’
SUMMARY: processing the following file failed:
‘DeeDeeExperiment_manual.Rmd’
Error: Vignette re-building failed.
Execution halted