Jakob Theorell
| Snapshot Date: 2025-03-18 13:40 -0400 (Tue, 18 Mar 2025) |
| git_url: https://git.bioconductor.org/packages/DepecheR |
| git_branch: devel |
| git_last_commit: 68cbb01 |
| git_last_commit_date: 2024-10-29 10:35:27 -0400 (Tue, 29 Oct 2024) |
| Back to Multiple platform build/check report for BioC 3.21: simplified long |
|
This page was generated on 2025-03-19 11:42 -0400 (Wed, 19 Mar 2025).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) | x86_64 | R Under development (unstable) (2025-03-13 r87965) -- "Unsuffered Consequences" | 4742 |
| palomino7 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2025-03-01 r87860 ucrt) -- "Unsuffered Consequences" | 4545 |
| lconway | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4576 |
| kjohnson3 | macOS 13.7.1 Ventura | arm64 | R Under development (unstable) (2025-03-02 r87868) -- "Unsuffered Consequences" | 4528 |
| kunpeng2 | Linux (openEuler 24.03 LTS) | aarch64 | R Under development (unstable) (2025-02-19 r87757) -- "Unsuffered Consequences" | 4459 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 550/2313 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| DepecheR 1.23.0 (landing page) Jakob Theorell
| nebbiolo1 | Linux (Ubuntu 24.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson3 | macOS 13.7.1 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
| kunpeng2 | Linux (openEuler 24.03 LTS) / aarch64 | OK | OK | WARNINGS | ||||||||||
|
To the developers/maintainers of the DepecheR package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/DepecheR.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: DepecheR |
| Version: 1.23.0 |
| Command: E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:DepecheR.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings DepecheR_1.23.0.tar.gz |
| StartedAt: 2025-03-19 00:52:47 -0400 (Wed, 19 Mar 2025) |
| EndedAt: 2025-03-19 00:55:39 -0400 (Wed, 19 Mar 2025) |
| EllapsedTime: 171.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: DepecheR.Rcheck |
| Warnings: 0 |
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###
### Running command:
###
### E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:DepecheR.install-out.txt --library=E:\biocbuild\bbs-3.21-bioc\R\library --no-vignettes --timings DepecheR_1.23.0.tar.gz
###
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* using log directory 'E:/biocbuild/bbs-3.21-bioc/meat/DepecheR.Rcheck'
* using R Under development (unstable) (2025-03-01 r87860 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 13.3.0
GNU Fortran (GCC) 13.3.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'DepecheR/DESCRIPTION' ... OK
* this is package 'DepecheR' version '1.23.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'DepecheR' can be installed ... OK
* used C++ compiler: 'G__~1.EXE (GCC) 14.2.0'
* checking C++ specification ... NOTE
Specified C++11: please drop specification unless essential
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files for x64 is not available
* checking files in 'vignettes' ... OK
* checking examples ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs
See
'E:/biocbuild/bbs-3.21-bioc/meat/DepecheR.Rcheck/00check.log'
for details.
DepecheR.Rcheck/00install.out
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###
### Running command:
###
### E:\biocbuild\bbs-3.21-bioc\R\bin\R.exe CMD INSTALL DepecheR
###
##############################################################################
##############################################################################
* installing to library 'E:/biocbuild/bbs-3.21-bioc/R/library'
* installing *source* package 'DepecheR' ...
** this is package 'DepecheR' version '1.23.0'
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 14.2.0'
using C++11
g++ -std=gnu++11 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I../inst/include -pthread -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c Clusterer.cpp -o Clusterer.o
In file included from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Core:205,
from Clusterer.h:14,
from Clusterer.cpp:14:
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes]
46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i;
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes]
47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b;
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument '__m128' [-Wignored-attributes]
49 | template<> struct is_arithmetic<__m128> { enum { value = true }; };
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes]
50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; };
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument '__m128d' [-Wignored-attributes]
51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; };
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes]
222 | template<> struct unpacket_traits<Packet4f> {
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes]
228 | template<> struct unpacket_traits<Packet2d> {
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes]
1124 | ptranspose(PacketBlock<Packet4f,4>& kernel) {
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes]
1129 | ptranspose(PacketBlock<Packet2d,2>& kernel) {
| ^
In file included from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Core:174:
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes]
16 | struct conj_helper<PACKET_REAL, PACKET_CPLX, false, false> { \
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes]
29 | struct conj_helper<PACKET_CPLX, PACKET_REAL, false, false> { \
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes]
16 | struct conj_helper<PACKET_REAL, PACKET_CPLX, false, false> { \
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes]
29 | struct conj_helper<PACKET_CPLX, PACKET_REAL, false, false> { \
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Core:165:
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<float, 4>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<float, 4, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from 'struct Eigen::internal::traits<Eigen::Quaternion<float> >'
266 | Alignment = internal::traits<Coefficients>::Alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here
24 | ResAlignment = traits<Quaternion<float> >::Alignment
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(4) float>::half' {aka '__m128'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
In file included from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Core:271:
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Matrix<float, 4, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Matrix<float, 4, 1> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<float, 4, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix<float, 4, 1>'
178 | class Matrix
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase<Eigen::Quaternion<float> >'
46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType;
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from 'class Eigen::Quaternion<float>'
273 | class Quaternion : public QuaternionBase<Quaternion<_Scalar,_Options> >
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here
27 | {
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 4>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 4, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from 'struct Eigen::internal::traits<Eigen::Quaternion<double> >'
266 | Alignment = internal::traits<Coefficients>::Alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here
98 | ResAlignment = traits<Quaternion<double> >::Alignment
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Matrix<double, 4, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Matrix<double, 4, 1> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix<double, 4, 1>'
178 | class Matrix
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase<Eigen::Quaternion<double> >'
46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType;
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from 'class Eigen::Quaternion<double>'
273 | class Quaternion : public QuaternionBase<Quaternion<_Scalar,_Options> >
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here
102 | {
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, -1>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, -1, -1, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix<double, -1, -1, 1>'
178 | class Matrix
| ^~~~~~
Clusterer.h:25:17: required from here
25 | RowMatrixXd centers;
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Matrix<double, -1, -1, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Matrix<double, -1, -1, 1> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix<double, -1, -1, 1>'
178 | class Matrix
| ^~~~~~
Clusterer.h:25:17: required from here
25 | RowMatrixXd centers;
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true, true>'
329 | class BlockImpl_dense<XprType,BlockRows,BlockCols, InnerPanel,true>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from 'class Eigen::BlockImpl<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true, Eigen::Dense>'
154 | class BlockImpl<XprType, BlockRows, BlockCols, InnerPanel, Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
Clusterer.cpp:42:23: required from here
42 | if(!mu.row(i).isZero(0)){
| ~~~~~~^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1, 1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1, 1> >'
60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp<NullaryOp, PlainObjectType> >::type, internal::no_assignment_operator
| ^~~~~~~~~~~~~~
Clusterer.cpp:56:46: required from here
56 | RowMatrixXd distances = RowMatrixXd::Zero(X_rows,non_zero_size);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, -1, 1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, -1, 1, false>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, -1, 1, false>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, -1, 1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, -1, 1, false> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, -1, 1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, -1, 1, false>, 1>'
223 | template<typename Derived> class MapBase<Derived, WriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense<Eigen::Matrix<double, -1, -1, 1>, -1, 1, false, true>'
329 | class BlockImpl_dense<XprType,BlockRows,BlockCols, InnerPanel,true>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from 'class Eigen::BlockImpl<Eigen::Matrix<double, -1, -1, 1>, -1, 1, false, Eigen::Dense>'
154 | class BlockImpl<XprType, BlockRows, BlockCols, InnerPanel, Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, -1, 1, false>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
Clusterer.cpp:58:22: required from here
58 | distances.col(i)= ((-X).rowwise()+mu.row(active_indices[i])).rowwise().norm();
| ~~~~~~~~~~~~~^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1>, Eigen::Dense>'
94 | class CwiseUnaryOpImpl
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >'
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^~~~~~~~~~~~
Clusterer.cpp:58:30: required from here
58 | distances.col(i)= ((-X).rowwise()+mu.row(active_indices[i])).rowwise().norm();
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Replicate.h:61:65: required from 'class Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1>'
61 | template<typename MatrixType,int RowFactor,int ColFactor> class Replicate
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from 'struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >'
38 | >::type Scalar;
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
Clusterer.cpp:58:67: required from here
58 | distances.col(i)= ((-X).rowwise()+mu.row(active_indices[i])).rowwise().norm();
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
Clusterer.cpp:58:67: required from here
58 | distances.col(i)= ((-X).rowwise()+mu.row(active_indices[i])).rowwise().norm();
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> >, Eigen::Dense>'
94 | class CwiseUnaryOpImpl
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >'
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorwiseOp.h:43:39: required from 'struct Eigen::internal::traits<Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, Eigen::internal::member_sum<double, double>, 1> >'
43 | typedef typename MatrixType::Scalar InputScalar;
| ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:23:29: required from 'struct Eigen::internal::traits<const Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, Eigen::internal::member_sum<double, double>, 1> >'
23 | template<typename T> struct traits<const T> : traits<T> {};
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, Eigen::internal::member_sum<double, double>, 1> >'
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^~~~~~~~~~~~
Clusterer.cpp:58:84: required from here
58 | distances.col(i)= ((-X).rowwise()+mu.row(active_indices[i])).rowwise().norm();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, Eigen::internal::member_sum<double, double>, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, Eigen::internal::member_sum<double, double>, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, Eigen::internal::member_sum<double, double>, 1> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorwiseOp.h:56:7: required from 'class Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, Eigen::internal::member_sum<double, double>, 1>'
56 | class PartialReduxExpr : public internal::dense_xpr_base< PartialReduxExpr<MatrixType, MemberOp, Direction> >::type,
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:23:28: required from 'struct Eigen::internal::traits<Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, Eigen::internal::member_sum<double, double>, 1> > >'
23 | >::type Scalar;
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_sqrt_op<double>, const Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, Eigen::internal::member_sum<double, double>, 1>, Eigen::Dense>'
94 | class CwiseUnaryOpImpl
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, Eigen::internal::member_sum<double, double>, 1> >'
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^~~~~~~~~~~~
Clusterer.cpp:58:84: required from here
58 | distances.col(i)= ((-X).rowwise()+mu.row(active_indices[i])).rowwise().norm();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, Eigen::internal::member_sum<double, double>, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, Eigen::internal::member_sum<double, double>, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, Eigen::internal::member_sum<double, double>, 1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_sqrt_op<double>, const Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, Eigen::internal::member_sum<double, double>, 1>, Eigen::Dense>'
94 | class CwiseUnaryOpImpl
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, Eigen::internal::member_sum<double, double>, 1> >'
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^~~~~~~~~~~~
Clusterer.cpp:58:84: required from here
58 | distances.col(i)= ((-X).rowwise()+mu.row(active_indices[i])).rowwise().norm();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Matrix<double, -1, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Matrix<double, -1, 1> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix<double, -1, 1>'
178 | class Matrix
| ^~~~~~
Clusterer.cpp:62:20: required from here
62 | Eigen::VectorXd::Index min_index;
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:223:34: required from 'class Eigen::MapBase<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, 1>'
223 | template<typename Derived> class MapBase<Derived, WriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true, true>'
329 | class BlockImpl_dense<XprType,BlockRows,BlockCols, InnerPanel,true>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from 'class Eigen::BlockImpl<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true, Eigen::Dense>'
154 | class BlockImpl<XprType, BlockRows, BlockCols, InnerPanel, Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
Clusterer.cpp:64:23: required from here
64 | (distances.row(j)).minCoeff(&min_index);
| ~~~~~~~~~~~~~^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from 'class Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> >'
42 | class ArrayWrapper : public ArrayBase<ArrayWrapper<ExpressionType> >
| ^~~~~~~~~~~~
Clusterer.cpp:104:44: required from here
104 | mu_p.row(i)= ((centers.row(i).array()-reg/2)/nums(i)).matrix();
| ~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> >'
60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp<NullaryOp, PlainObjectType> >::type, internal::no_assignment_operator
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from 'struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> > > >'
38 | >::type Scalar;
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
Clusterer.cpp:104:51: required from here
104 | mu_p.row(i)= ((centers.row(i).array()-reg/2)/nums(i)).matrix();
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
Clusterer.cpp:104:51: required from here
104 | mu_p.row(i)= ((centers.row(i).array()-reg/2)/nums(i)).matrix();
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 1, -1, 1, 1, -1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 1, -1, 1, 1, -1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, 1, -1, 1, 1, -1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, 1, -1, 1, 1, -1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, 1, -1, 1, 1, -1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, 1, -1, 1, 1, -1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, 1, -1, 1, 1, -1>'
45 | class Array
| ^~~~~
Clusterer.cpp:104:60: required from here
104 | mu_p.row(i)= ((centers.row(i).array()-reg/2)/nums(i)).matrix();
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
Clusterer.cpp:104:60: required from here
104 | mu_p.row(i)= ((centers.row(i).array()-reg/2)/nums(i)).matrix();
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> > > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> > > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> > > > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7: required from 'class Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> > > >'
140 | class MatrixWrapper : public MatrixBase<MatrixWrapper<ExpressionType> >
| ^~~~~~~~~~~~~
Clusterer.cpp:104:69: required from here
104 | mu_p.row(i)= ((centers.row(i).array()-reg/2)/nums(i)).matrix();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
Clusterer.cpp:105:51: required from here
105 | mu_n.row(i)= ((centers.row(i).array()+reg/2)/nums(i)).matrix();
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
Clusterer.cpp:105:60: required from here
105 | mu_n.row(i)= ((centers.row(i).array()+reg/2)/nums(i)).matrix();
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> > > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> > > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> > > > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7: required from 'class Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, 1, -1, 1, 1, -1> > > >'
140 | class MatrixWrapper : public MatrixBase<MatrixWrapper<ExpressionType> >
| ^~~~~~~~~~~~~
Clusterer.cpp:105:69: required from here
105 | mu_n.row(i)= ((centers.row(i).array()+reg/2)/nums(i)).matrix();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_max_op<double, double, 0>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1, 1> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_max_op<double, double, 0>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1, 1> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_max_op<double, double, 0>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1, 1> > > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_max_op<double, double, 0>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1, 1> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_max_op<double, double, 0>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1, 1> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
Clusterer.cpp:107:53: required from here
107 | RowMatrixXd mu_new = mu_n.cwiseMin(mu_p.cwiseMax(0));
| ~~~~~~~~~~~~~^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_min_op<double, double, 0>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_max_op<double, double, 0>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1, 1> > > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_min_op<double, double, 0>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_max_op<double, double, 0>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1, 1> > > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_min_op<double, double, 0>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_max_op<double, double, 0>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1, 1> > > > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_min_op<double, double, 0>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_max_op<double, double, 0>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1, 1> > >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_min_op<double, double, 0>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_max_op<double, double, 0>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1, 1> > > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
Clusterer.cpp:107:39: required from here
107 | RowMatrixXd mu_new = mu_n.cwiseMin(mu_p.cwiseMax(0));
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Replicate<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Replicate<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Replicate<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Replicate.h:61:65: required from 'class Eigen::Replicate<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1>'
61 | template<typename MatrixType,int RowFactor,int ColFactor> class Replicate
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from 'struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >'
38 | >::type Scalar;
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
Clusterer.cpp:159:54: required from here
159 | Eigen::VectorXd dists = ((-X).rowwise()+mu.row(0)).rowwise().squaredNorm();
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
Clusterer.cpp:159:54: required from here
159 | Eigen::VectorXd dists = ((-X).rowwise()+mu.row(0)).rowwise().squaredNorm();
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> >, Eigen::Dense>'
94 | class CwiseUnaryOpImpl
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >'
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorwiseOp.h:43:39: required from 'struct Eigen::internal::traits<Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, Eigen::internal::member_sum<double, double>, 1> >'
43 | typedef typename MatrixType::Scalar InputScalar;
| ^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorwiseOp.h:56:7: required from 'class Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, Eigen::internal::member_sum<double, double>, 1>'
56 | class PartialReduxExpr : public internal::dense_xpr_base< PartialReduxExpr<MatrixType, MemberOp, Direction> >::type,
| ^~~~~~~~~~~~~~~~
Clusterer.cpp:159:78: required from here
159 | Eigen::VectorXd dists = ((-X).rowwise()+mu.row(0)).rowwise().squaredNorm();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, Eigen::internal::member_sum<double, double>, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, Eigen::internal::member_sum<double, double>, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, Eigen::internal::member_sum<double, double>, 1> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorwiseOp.h:56:7: required from 'class Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, Eigen::internal::member_sum<double, double>, 1>'
56 | class PartialReduxExpr : public internal::dense_xpr_base< PartialReduxExpr<MatrixType, MemberOp, Direction> >::type,
| ^~~~~~~~~~~~~~~~
Clusterer.cpp:159:78: required from here
159 | Eigen::VectorXd dists = ((-X).rowwise()+mu.row(0)).rowwise().squaredNorm();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, -1, 1, false> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, -1, 1, false> >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, -1, 1, false> >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, -1, 1, false> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, -1, 1, false> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from 'class Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, -1, 1, false> >'
42 | class ArrayWrapper : public ArrayBase<ArrayWrapper<ExpressionType> >
| ^~~~~~~~~~~~
Clusterer.cpp:193:33: required from here
193 | X.col(i)=(X.col(i).array()/scaling).matrix();
| ~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >'
60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp<NullaryOp, PlainObjectType> >::type, internal::no_assignment_operator
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from 'struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, -1, 1, false> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >'
38 | >::type Scalar;
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, -1, 1, false> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, -1, 1, false> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
Clusterer.cpp:193:36: required from here
193 | X.col(i)=(X.col(i).array()/scaling).matrix();
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, -1, 1, false> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, -1, 1, false> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, -1, 1, false> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, -1, 1, false> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, -1, 1, false> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
Clusterer.cpp:193:36: required from here
193 | X.col(i)=(X.col(i).array()/scaling).matrix();
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, -1, 1, false> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, -1, 1, false> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, -1, 1, false> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:140:7: required from 'class Eigen::MatrixWrapper<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::ArrayWrapper<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, -1, 1, false> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >'
140 | class MatrixWrapper : public MatrixBase<MatrixWrapper<ExpressionType> >
| ^~~~~~~~~~~~~
Clusterer.cpp:193:51: required from here
193 | X.col(i)=(X.col(i).array()/scaling).matrix();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, Eigen::internal::member_sum<double, double>, 0>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, Eigen::internal::member_sum<double, double>, 0> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, Eigen::internal::member_sum<double, double>, 0> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorwiseOp.h:56:7: required from 'class Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, Eigen::internal::member_sum<double, double>, 0>'
56 | class PartialReduxExpr : public internal::dense_xpr_base< PartialReduxExpr<MatrixType, MemberOp, Direction> >::type,
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from 'struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, Eigen::internal::member_sum<double, double>, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > > >'
38 | >::type Scalar;
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, Eigen::internal::member_sum<double, double>, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, Eigen::internal::member_sum<double, double>, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
Clusterer.cpp:195:37: required from here
195 | X = X.rowwise()-X.colwise().mean();
| ~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >'
60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp<NullaryOp, PlainObjectType> >::type, internal::no_assignment_operator
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from 'struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, Eigen::internal::member_sum<double, double>, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > > >'
38 | >::type Scalar;
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, Eigen::internal::member_sum<double, double>, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, Eigen::internal::member_sum<double, double>, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
Clusterer.cpp:195:37: required from here
195 | X = X.rowwise()-X.colwise().mean();
| ~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, Eigen::internal::member_sum<double, double>, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, Eigen::internal::member_sum<double, double>, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, Eigen::internal::member_sum<double, double>, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, Eigen::internal::member_sum<double, double>, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, Eigen::internal::member_sum<double, double>, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
Clusterer.cpp:195:37: required from here
195 | X = X.rowwise()-X.colwise().mean();
| ~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 1, -1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 1, -1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 1, -1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Matrix<double, 1, -1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Matrix<double, 1, -1> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, 1, -1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix<double, 1, -1>'
178 | class Matrix
| ^~~~~~
Clusterer.cpp:195:38: required from here
195 | X = X.rowwise()-X.colwise().mean();
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Replicate<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, Eigen::internal::member_sum<double, double>, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >, -1, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Replicate<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, Eigen::internal::member_sum<double, double>, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >, -1, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Replicate<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, Eigen::internal::member_sum<double, double>, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >, -1, 1> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Replicate.h:61:65: required from 'class Eigen::Replicate<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, Eigen::internal::member_sum<double, double>, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >, -1, 1>'
61 | template<typename MatrixType,int RowFactor,int ColFactor> class Replicate
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from 'struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::Replicate<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, Eigen::internal::member_sum<double, double>, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >, -1, 1> > >'
38 | >::type Scalar;
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::Replicate<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, Eigen::internal::member_sum<double, double>, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >, -1, 1>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::Replicate<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, Eigen::internal::member_sum<double, double>, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >, -1, 1> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
Clusterer.cpp:195:38: required from here
195 | X = X.rowwise()-X.colwise().mean();
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::Replicate<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, Eigen::internal::member_sum<double, double>, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::Replicate<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, Eigen::internal::member_sum<double, double>, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::Replicate<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, Eigen::internal::member_sum<double, double>, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >, -1, 1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::Replicate<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, Eigen::internal::member_sum<double, double>, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >, -1, 1>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::Replicate<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, Eigen::internal::member_sum<double, double>, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >, -1, 1> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
Clusterer.cpp:195:38: required from here
195 | X = X.rowwise()-X.colwise().mean();
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
Clusterer.cpp:202:43: required from here
202 | ssq+= (X.row(i)-centers.row(ind(i))).squaredNorm();
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >'
60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp<NullaryOp, PlainObjectType> >::type, internal::no_assignment_operator
| ^~~~~~~~~~~~~~
Clusterer.cpp:271:56: required from here
271 | Eigen::VectorXd population1 = Eigen::VectorXd::Zero(k);
| ~~~~~~~~~~~~~~~~~~~~~^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from 'class Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >'
42 | class ArrayWrapper : public ArrayBase<ArrayWrapper<ExpressionType> >
| ^~~~~~~~~~~~
Clusterer.cpp:281:45: required from here
281 | const double false1 = (population1.array()*(population1.array()-1.0/size)*(size/(size-1))).sum()*(population2.array()*(population2.array()-1.0/size)*(size/(size-1))).sum();
| ~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
Clusterer.cpp:281:73: required from here
281 | const double false1 = (population1.array()*(population1.array()-1.0/size)*(size/(size-1))).sum()*(population2.array()*(population2.array()-1.0/size)*(size/(size-1))).sum();
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Array<double, -1, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, -1, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Array<double, -1, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Array<double, -1, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::Array<double, -1, 1> >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Array<double, -1, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array<double, -1, 1>'
45 | class Array
| ^~~~~
Clusterer.cpp:281:77: required from here
281 | const double false1 = (population1.array()*(population1.array()-1.0/size)*(size/(size-1))).sum()*(population2.array()*(population2.array()-1.0/size)*(size/(size-1))).sum();
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
Clusterer.cpp:281:77: required from here
281 | const double false1 = (population1.array()*(population1.array()-1.0/size)*(size/(size-1))).sum()*(population2.array()*(population2.array()-1.0/size)*(size/(size-1))).sum();
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
Clusterer.cpp:281:93: required from here
281 | const double false1 = (population1.array()*(population1.array()-1.0/size)*(size/(size-1))).sum()*(population2.array()*(population2.array()-1.0/size)*(size/(size-1))).sum();
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
Clusterer.cpp:282:96: required from here
282 | const double false2 = (population1.array()*(1-(population1.array()-1.0/size)*(size/(size-1)))).sum()*(population2.array()*(1-(population2.array()-1.0/size)*(size/(size-1)))).sum();
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
Clusterer.cpp:282:96: required from here
282 | const double false2 = (population1.array()*(1-(population1.array()-1.0/size)*(size/(size-1)))).sum()*(population2.array()*(1-(population2.array()-1.0/size)*(size/(size-1)))).sum();
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > > > >'
39 | template<typename Derived> class ArrayBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
Clusterer.cpp:282:97: required from here
282 | const double false2 = (population1.array()*(1-(population1.array()-1.0/size)*(size/(size-1)))).sum()*(population2.array()*(1-(population2.array()-1.0/size)*(size/(size-1)))).sum();
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1> >'
60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp<NullaryOp, PlainObjectType> >::type, internal::no_assignment_operator
| ^~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from 'struct Eigen::internal::traits<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1> > > >'
38 | >::type Scalar;
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
Clusterer.cpp:387:30: required from here
387 | ret.distances= distances/iterations;
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1> > > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, Eigen::Dense>'
148 | class CwiseBinaryOpImpl
| ^~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, -1, 1> > >'
77 | class CwiseBinaryOp :
| ^~~~~~~~~~~~~
Clusterer.cpp:387:30: required from here
387 | ret.distances= distances/iterations;
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
In file included from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Core:277:
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:372:102: required from 'struct Eigen::internal::plain_object_eval<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, Eigen::Dense>'
372 | typedef typename plain_matrix_type_dense<T,typename traits<T>::XprKind, evaluator<T>::Flags>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:530:51: required from 'bool Eigen::DenseBase<Derived>::isZero(const RealScalar&) const [with Derived = Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>; RealScalar = double]'
530 | typename internal::nested_eval<Derived,1>::type self(derived());
| ^~~~
Clusterer.cpp:42:33: required from here
42 | if(!mu.row(i).isZero(0)){
| ~~~~~~~~~~~~~~~~^~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> > >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> > > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> > > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> >, Eigen::Dense>'
94 | class CwiseUnaryOpImpl
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> > >'
55 | class CwiseUnaryOp : public CwiseUnaryOpImpl<UnaryOp, XprType, typename internal::traits<XprType>::StorageKind>, internal::no_assignment_operator
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:98:40: required from 'typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real Eigen::MatrixBase<Derived>::squaredNorm() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> >; typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real = double; typename Eigen::internal::traits<T>::Scalar = double]'
98 | return numext::real((*this).cwiseAbs2().sum());
| ~~~~~~~~~~~~~~~~~^~
Clusterer.cpp:202:57: required from here
202 | ssq+= (X.row(i)-centers.row(ind(i))).squaredNorm();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Visitor.h:79:51: required from 'class Eigen::internal::visitor_evaluator<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> >'
79 | CoeffReadCost = internal::evaluator<XprType>::CoeffReadCost
| ^~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Visitor.h:123:17: required from 'void Eigen::DenseBase<Derived>::visit(Visitor&) const [with Visitor = Eigen::internal::min_coeff_visitor<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, 0>; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>]'
123 | ThisEvaluator thisEval(derived());
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Visitor.h:323:14: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::minCoeff(IndexType*) const [with int NaNPropagation = 0; IndexType = long long int; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>; typename Eigen::internal::traits<T>::Scalar = double]'
323 | this->visit(minVisitor);
| ~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:496:37: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::minCoeff(IndexType*) const [with IndexType = long long int; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>; typename Eigen::internal::traits<T>::Scalar = double]'
496 | return minCoeff<PropagateFast>(index);
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
Clusterer.cpp:64:36: required from here
64 | (distances.row(j)).minCoeff(&min_index);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >; Eigen::Index = long long int]':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from 'static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >; Scalar = double]'
243 | const Index alignedStart = internal::first_default_aligned(xpr);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >; typename Eigen::internal::traits<T>::Scalar = double]'
418 | return internal::redux_impl<Func, ThisEvaluator>::run(thisEval, func, derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Clusterer.cpp:281:99: required from here
281 | const double false1 = (population1.array()*(population1.array()-1.0/size)*(size/(size-1))).sum()*(population2.array()*(population2.array()-1.0/size)*(size/(size-1))).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
654 | return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > > >; Eigen::Index = long long int]':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from 'static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > > >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > > > >; Scalar = double]'
243 | const Index alignedStart = internal::first_default_aligned(xpr);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > > >; typename Eigen::internal::traits<T>::Scalar = double]'
418 | return internal::redux_impl<Func, ThisEvaluator>::run(thisEval, func, derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> >, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::ArrayWrapper<Eigen::Matrix<double, -1, 1> >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > >, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Array<double, -1, 1> > > > >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Clusterer.cpp:282:103: required from here
282 | const double false2 = (population1.array()*(1-(population1.array()-1.0/size)*(size/(size-1)))).sum()*(population2.array()*(1-(population2.array()-1.0/size)*(size/(size-1)))).sum();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
654 | return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase<Derived>&) [with Derived = Eigen::CwiseUnaryOp<scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<scalar_difference_op<double, double>, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> > >; Eigen::Index = long long int]':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:243:63: required from 'static Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::Scalar Eigen::internal::redux_impl<Func, Evaluator, 3, 0>::run(const Evaluator&, const Func&, const XprType&) [with XprType = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> > >; Func = Eigen::internal::scalar_sum_op<double, double>; Evaluator = Eigen::internal::redux_evaluator<Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> > > >; Scalar = double]'
243 | const Index alignedStart = internal::first_default_aligned(xpr);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> > >; typename Eigen::internal::traits<T>::Scalar = double]'
418 | return internal::redux_impl<Func, ThisEvaluator>::run(thisEval, func, derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> > >; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Dot.h:98:46: required from 'typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real Eigen::MatrixBase<Derived>::squaredNorm() const [with Derived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, const Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true> >; typename Eigen::NumTraits<typename Eigen::internal::traits<T>::Scalar>::Real = double; typename Eigen::internal::traits<T>::Scalar = double]'
98 | return numext::real((*this).cwiseAbs2().sum());
| ~~~~~~~~~~~~~~~~~~~~~~~^~
Clusterer.cpp:202:57: required from here
202 | ssq+= (X.row(i)-centers.row(ind(i))).squaredNorm();
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:654:74: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
654 | return internal::first_aligned<int(unpacket_traits<DefaultPacketType>::alignment),Derived>(m);
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, -1, 1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:780:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, -1, 1, false>; SrcXprType = Eigen::CwiseUnaryOp<scalar_sqrt_op<double>, const Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, member_sum<double, double>, 1> >; Functor = assign_op<double, double>]'
780 | DstEvaluatorType dstEvaluator(dst);
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from 'static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, -1, 1, false>; SrcXprType = Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, Eigen::internal::member_sum<double, double>, 1> >; Functor = Eigen::internal::assign_op<double, double>; Weak = void]'
954 | call_dense_assignment_loop(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, -1, 1, false>; Src = Eigen::CwiseUnaryOp<scalar_sqrt_op<double>, const Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, member_sum<double, double>, 1> >; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, -1, 1, false>; Src = Eigen::CwiseUnaryOp<scalar_sqrt_op<double>, const Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, member_sum<double, double>, 1> >; Func = assign_op<double, double>; typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::DenseShape]'
858 | call_assignment_no_alias(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, -1, 1, false>; Src = Eigen::CwiseUnaryOp<scalar_sqrt_op<double>, const Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, member_sum<double, double>, 1> >]'
836 | call_assignment(dst, src, internal::assign_op<typename Dst::Scalar,typename Src::Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Assign.h:66:28: required from 'Derived& Eigen::MatrixBase<Derived>::operator=(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, Eigen::internal::member_sum<double, double>, 1> >; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, -1, 1, false>]'
66 | internal::call_assignment(derived(), other.derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
Clusterer.cpp:58:85: required from here
58 | distances.col(i)= ((-X).rowwise()+mu.row(active_indices[i])).rowwise().norm();
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, 1, -1, true>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, 1, -1, true> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, 1, -1, true> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from 'class Eigen::internal::BlockImpl_dense<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, 1, -1, true, false>'
172 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel, bool HasDirectAccess> class BlockImpl_dense
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from 'class Eigen::BlockImpl<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, 1, -1, true, Eigen::Dense>'
154 | class BlockImpl<XprType, BlockRows, BlockCols, InnerPanel, Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, 1, -1, true>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PartialReduxEvaluator.h:183:72: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from 'static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix<double, -1, 1>; SrcXprType = Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, Eigen::internal::member_sum<double, double>, 1>; Functor = Eigen::internal::assign_op<double, double>; Weak = void]'
954 | call_dense_assignment_loop(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix<double, -1, 1>; Src = Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, member_sum<double, double>, 1>; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, Eigen::internal::member_sum<double, double>, 1>; Derived = Eigen::Matrix<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, Eigen::internal::member_sum<double, double>, 1>; Derived = Eigen::Matrix<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, Eigen::internal::member_sum<double, double>, 1>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]'
423 | : Base(other.derived())
| ^
Clusterer.cpp:159:79: required from here
159 | Eigen::VectorXd dists = ((-X).rowwise()+mu.row(0)).rowwise().squaredNorm();
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, 1, -1, true>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, 1, -1, true> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, 1, -1, true> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:172:103: required from 'class Eigen::internal::BlockImpl_dense<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, 1, -1, true, false>'
172 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel, bool HasDirectAccess> class BlockImpl_dense
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: required from 'class Eigen::BlockImpl<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, 1, -1, true, Eigen::Dense>'
154 | class BlockImpl<XprType, BlockRows, BlockCols, InnerPanel, Dense>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, 1, -1, true>'
103 | template<typename XprType, int BlockRows, int BlockCols, bool InnerPanel> class Block
| ^~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PartialReduxEvaluator.h:183:72: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from 'static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, -1, 1, false>; SrcXprType = Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, Eigen::internal::member_sum<double, double>, 1> >; Functor = Eigen::internal::assign_op<double, double>; Weak = void]'
954 | call_dense_assignment_loop(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, -1, 1, false>; Src = Eigen::CwiseUnaryOp<scalar_sqrt_op<double>, const Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, member_sum<double, double>, 1> >; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, -1, 1, false>; Src = Eigen::CwiseUnaryOp<scalar_sqrt_op<double>, const Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, member_sum<double, double>, 1> >; Func = assign_op<double, double>; typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::DenseShape]'
858 | call_assignment_no_alias(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, -1, 1, false>; Src = Eigen::CwiseUnaryOp<scalar_sqrt_op<double>, const Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, member_sum<double, double>, 1> >]'
836 | call_assignment(dst, src, internal::assign_op<typename Dst::Scalar,typename Src::Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Assign.h:66:28: required from 'Derived& Eigen::MatrixBase<Derived>::operator=(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, Eigen::internal::member_sum<double, double>, 1> >; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, -1, 1, false>]'
66 | internal::call_assignment(derived(), other.derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
Clusterer.cpp:58:85: required from here
58 | distances.col(i)= ((-X).rowwise()+mu.row(active_indices[i])).rowwise().norm();
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, 1, -1, true> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from 'class Eigen::internal::redux_evaluator<Eigen::Block<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, 1, -1, true> >'
357 | class redux_evaluator : public internal::evaluator<_XprType>
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::Block<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, 1, -1, true>; typename Eigen::internal::traits<T>::Scalar = double]'
414 | ThisEvaluator thisEval(derived());
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::Block<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, 1, -1, true>; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorwiseOp.h:114:1: required from 'ResultType Eigen::internal::member_sum<ResultType, Scalar>::operator()(const XprType&) const [with XprType = Eigen::Block<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, 1, -1, true>; ResultType = double; Scalar = double]'
97 | { return mat.MEMBER(); } \
| ~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PartialReduxEvaluator.h:183:21: required from 'const Eigen::internal::evaluator<Eigen::PartialReduxExpr<MatrixType, MemberOp, Direction> >::Scalar Eigen::internal::evaluator<Eigen::PartialReduxExpr<MatrixType, MemberOp, Direction> >::coeff(Eigen::Index) const [with ArgType = const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >; MemberOp = Eigen::internal::member_sum<double, double>; int Direction = 1; Scalar = double; Eigen::Index = long long int]'
183 | return m_functor(m_arg.template subVector<DirectionType(Direction)>(index));
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:660:61: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from 'static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Matrix<double, -1, 1>; SrcXprType = Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, Eigen::internal::member_sum<double, double>, 1>; Functor = Eigen::internal::assign_op<double, double>; Weak = void]'
954 | call_dense_assignment_loop(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix<double, -1, 1>; Src = Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, member_sum<double, double>, 1>; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:797:41: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set_noalias(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, Eigen::internal::member_sum<double, double>, 1>; Derived = Eigen::Matrix<double, -1, 1>]'
797 | internal::call_assignment_no_alias(this->derived(), other.derived(), internal::assign_op<Scalar,typename OtherDerived::Scalar>());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:594:19: required from 'Eigen::PlainObjectBase<Derived>::PlainObjectBase(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, Eigen::internal::member_sum<double, double>, 1>; Derived = Eigen::Matrix<double, -1, 1>]'
594 | _set_noalias(other);
| ~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:423:29: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::Matrix(const Eigen::EigenBase<OtherDerived>&) [with OtherDerived = Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, Eigen::internal::member_sum<double, double>, 1>; _Scalar = double; int _Rows = -1; int _Cols = 1; int _Options = 0; int _MaxRows = -1; int _MaxCols = 1]'
423 | : Base(other.derived())
| ^
Clusterer.cpp:159:79: required from here
159 | Eigen::VectorXd dists = ((-X).rowwise()+mu.row(0)).rowwise().squaredNorm();
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, 1, -1, true> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from 'class Eigen::internal::redux_evaluator<Eigen::Block<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, 1, -1, true> >'
357 | class redux_evaluator : public internal::evaluator<_XprType>
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::Block<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, 1, -1, true>; typename Eigen::internal::traits<T>::Scalar = double]'
414 | ThisEvaluator thisEval(derived());
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::Block<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, 1, -1, true>; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorwiseOp.h:114:1: required from 'ResultType Eigen::internal::member_sum<ResultType, Scalar>::operator()(const XprType&) const [with XprType = Eigen::Block<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, 1, -1, true>; ResultType = double; Scalar = double]'
97 | { return mat.MEMBER(); } \
| ~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PartialReduxEvaluator.h:183:21: required from 'const Eigen::internal::evaluator<Eigen::PartialReduxExpr<MatrixType, MemberOp, Direction> >::Scalar Eigen::internal::evaluator<Eigen::PartialReduxExpr<MatrixType, MemberOp, Direction> >::coeff(Eigen::Index) const [with ArgType = const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >; MemberOp = Eigen::internal::member_sum<double, double>; int Direction = 1; Scalar = double; Eigen::Index = long long int]'
183 | return m_functor(m_arg.template subVector<DirectionType(Direction)>(index));
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:589:40: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:954:31: required from 'static void Eigen::internal::Assignment<DstXprType, SrcXprType, Functor, Eigen::internal::Dense2Dense, Weak>::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, -1, 1, false>; SrcXprType = Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, Eigen::internal::member_sum<double, double>, 1> >; Functor = Eigen::internal::assign_op<double, double>; Weak = void]'
954 | call_dense_assignment_loop(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, -1, 1, false>; Src = Eigen::CwiseUnaryOp<scalar_sqrt_op<double>, const Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, member_sum<double, double>, 1> >; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, -1, 1, false>; Src = Eigen::CwiseUnaryOp<scalar_sqrt_op<double>, const Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, member_sum<double, double>, 1> >; Func = assign_op<double, double>; typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::DenseShape]'
858 | call_assignment_no_alias(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, -1, 1, false>; Src = Eigen::CwiseUnaryOp<scalar_sqrt_op<double>, const Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, member_sum<double, double>, 1> >]'
836 | call_assignment(dst, src, internal::assign_op<typename Dst::Scalar,typename Src::Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Assign.h:66:28: required from 'Derived& Eigen::MatrixBase<Derived>::operator=(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseUnaryOp<Eigen::internal::scalar_sqrt_op<double>, const Eigen::PartialReduxExpr<const Eigen::CwiseUnaryOp<Eigen::internal::scalar_abs2_op<double>, const Eigen::CwiseBinaryOp<Eigen::internal::scalar_sum_op<double, double>, const Eigen::CwiseUnaryOp<Eigen::internal::scalar_opposite_op<double>, const Eigen::Matrix<double, -1, -1, 1> >, const Eigen::Replicate<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, 1, -1, true>, -1, 1> > >, Eigen::internal::member_sum<double, double>, 1> >; Derived = Eigen::Block<Eigen::Matrix<double, -1, -1, 1>, -1, 1, false>]'
66 | internal::call_assignment(derived(), other.derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
Clusterer.cpp:58:85: required from here
58 | distances.col(i)= ((-X).rowwise()+mu.row(active_indices[i])).rowwise().norm();
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, -1, 2, true>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, -1, 2, true>, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, -1, 2, true> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, -1, 2, true> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, -1, 2, true>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense<const Eigen::Matrix<double, -1, -1, 1>, -1, 2, true, true>'
329 | class BlockImpl_dense<XprType,BlockRows,BlockCols, InnerPanel,true>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 20 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix<double, -1, -1, 1>; Src = Eigen::CwiseBinaryOp<scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::Replicate<Eigen::CwiseBinaryOp<scalar_quotient_op<double, double>, const Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, member_sum<double, double>, 0>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >, -1, 1> >; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Matrix<double, -1, -1, 1>; Src = Eigen::CwiseBinaryOp<scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::Replicate<Eigen::CwiseBinaryOp<scalar_quotient_op<double, double>, const Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, member_sum<double, double>, 0>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >, -1, 1> >; Func = assign_op<double, double>; typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::DenseShape]'
858 | call_assignment_no_alias(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix<double, -1, -1, 1>; Src = Eigen::CwiseBinaryOp<scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::Replicate<Eigen::CwiseBinaryOp<scalar_quotient_op<double, double>, const Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, member_sum<double, double>, 0>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >, -1, 1> >]'
836 | call_assignment(dst, src, internal::assign_op<typename Dst::Scalar,typename Src::Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:779:32: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::Replicate<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, Eigen::internal::member_sum<double, double>, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >, -1, 1> >; Derived = Eigen::Matrix<double, -1, -1, 1>]'
779 | internal::call_assignment(this->derived(), other.derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::Replicate<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, Eigen::internal::member_sum<double, double>, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >, -1, 1> >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 1; int _MaxRows = -1; int _MaxCols = -1]'
225 | return Base::_set(other);
| ~~~~~~~~~~^~~~~~~
Clusterer.cpp:195:38: required from here
195 | X = X.rowwise()-X.colwise().mean();
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, -1, 2, true> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from 'class Eigen::internal::redux_evaluator<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, -1, 2, true> >'
357 | class redux_evaluator : public internal::evaluator<_XprType>
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PartialReduxEvaluator.h:217:20: required from 'PacketType Eigen::internal::evaluator<Eigen::PartialReduxExpr<MatrixType, MemberOp, Direction> >::packet(Eigen::Index) const [with int LoadMode = 0; PacketType = __vector(2) double; ArgType = Eigen::Matrix<double, -1, -1, 1>; MemberOp = Eigen::internal::member_sum<double, double>; int Direction = 0; Eigen::Index = long long int]'
217 | PanelEvaluator panel_eval(panel);
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:790:80: required from 'PacketType Eigen::internal::binary_evaluator<Eigen::CwiseBinaryOp<BinaryOp, Lhs, Rhs>, Eigen::internal::IndexBased, Eigen::internal::IndexBased>::packet(Eigen::Index) const [with int LoadMode = 0; PacketType = __vector(2) double; BinaryOp = Eigen::internal::scalar_quotient_op<double, double>; Lhs = const Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, Eigen::internal::member_sum<double, double>, 0>; Rhs = const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >; typename Eigen::internal::traits<typename Eigen::CwiseBinaryOp<BinaryOp, Lhs, Rhs>::Lhs>::Scalar = double; typename Eigen::CwiseBinaryOp<BinaryOp, Lhs, Rhs>::Lhs = Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, Eigen::internal::member_sum<double, double>, 0>; typename Eigen::internal::traits<typename Eigen::CwiseBinaryOp<BinaryOp, Lhs, Rhs>::Rhs>::Scalar = double; typename Eigen::CwiseBinaryOp<BinaryOp, Lhs, Rhs>::Rhs = Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >; Eigen::Index = long long int]'
790 | return m_d.func().packetOp(m_d.lhsImpl.template packet<LoadMode,PacketType>(index),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:681:114: required from 'void Eigen::internal::generic_dense_assignment_kernel<DstEvaluatorTypeT, SrcEvaluatorTypeT, Functor, Version>::assignPacket(Eigen::Index) [with int StoreMode = 16; int LoadMode = 0; PacketType = __vector(2) double; DstEvaluatorTypeT = Eigen::internal::evaluator<Eigen::Matrix<double, 1, -1> >; SrcEvaluatorTypeT = Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, Eigen::internal::member_sum<double, double>, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > > >; Functor = Eigen::internal::assign_op<double, double>; int Version = 0; Eigen::Index = long long int]'
681 | m_functor.template assignPacket<StoreMode>(&m_dst.coeffRef(index), m_src.template packet<LoadMode,PacketType>(index));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:437:75: required from 'static void Eigen::internal::dense_assignment_loop<Kernel, 3, 0>::run(Kernel&) [with Kernel = Eigen::internal::generic_dense_assignment_kernel<Eigen::internal::evaluator<Eigen::Matrix<double, 1, -1> >, Eigen::internal::evaluator<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, Eigen::internal::member_sum<double, double>, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > > >, Eigen::internal::assign_op<double, double>, 0>]'
437 | kernel.template assignPacket<dstAlignment, srcAlignment, PacketType>(index);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:785:37: [ skipping 14 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix<double, -1, -1, 1>; Src = Eigen::CwiseBinaryOp<scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::Replicate<Eigen::CwiseBinaryOp<scalar_quotient_op<double, double>, const Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, member_sum<double, double>, 0>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >, -1, 1> >; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Matrix<double, -1, -1, 1>; Src = Eigen::CwiseBinaryOp<scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::Replicate<Eigen::CwiseBinaryOp<scalar_quotient_op<double, double>, const Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, member_sum<double, double>, 0>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >, -1, 1> >; Func = assign_op<double, double>; typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::DenseShape]'
858 | call_assignment_no_alias(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix<double, -1, -1, 1>; Src = Eigen::CwiseBinaryOp<scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::Replicate<Eigen::CwiseBinaryOp<scalar_quotient_op<double, double>, const Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, member_sum<double, double>, 0>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >, -1, 1> >]'
836 | call_assignment(dst, src, internal::assign_op<typename Dst::Scalar,typename Src::Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:779:32: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::Replicate<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, Eigen::internal::member_sum<double, double>, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >, -1, 1> >; Derived = Eigen::Matrix<double, -1, -1, 1>]'
779 | internal::call_assignment(this->derived(), other.derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::Replicate<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, Eigen::internal::member_sum<double, double>, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >, -1, 1> >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 1; int _MaxRows = -1; int _MaxCols = -1]'
225 | return Base::_set(other);
| ~~~~~~~~~~^~~~~~~
Clusterer.cpp:195:38: required from here
195 | X = X.rowwise()-X.colwise().mean();
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, -1, 1, false>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:481:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, -1, 1, false>, 2>'
481 | class DenseCoeffsBase<Derived, DirectAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, -1, 1, false> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, -1, 1, false> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, -1, 1, false>, 0>'
37 | template<typename Derived> class MapBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:329:7: required from 'class Eigen::internal::BlockImpl_dense<const Eigen::Matrix<double, -1, -1, 1>, -1, 1, false, true>'
329 | class BlockImpl_dense<XprType,BlockRows,BlockCols, InnerPanel,true>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Block.h:154:7: [ skipping 21 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix<double, -1, -1, 1>; Src = Eigen::CwiseBinaryOp<scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::Replicate<Eigen::CwiseBinaryOp<scalar_quotient_op<double, double>, const Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, member_sum<double, double>, 0>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >, -1, 1> >; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Matrix<double, -1, -1, 1>; Src = Eigen::CwiseBinaryOp<scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::Replicate<Eigen::CwiseBinaryOp<scalar_quotient_op<double, double>, const Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, member_sum<double, double>, 0>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >, -1, 1> >; Func = assign_op<double, double>; typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::DenseShape]'
858 | call_assignment_no_alias(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix<double, -1, -1, 1>; Src = Eigen::CwiseBinaryOp<scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::Replicate<Eigen::CwiseBinaryOp<scalar_quotient_op<double, double>, const Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, member_sum<double, double>, 0>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >, -1, 1> >]'
836 | call_assignment(dst, src, internal::assign_op<typename Dst::Scalar,typename Src::Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:779:32: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::Replicate<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, Eigen::internal::member_sum<double, double>, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >, -1, 1> >; Derived = Eigen::Matrix<double, -1, -1, 1>]'
779 | internal::call_assignment(this->derived(), other.derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::Replicate<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, Eigen::internal::member_sum<double, double>, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >, -1, 1> >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 1; int _MaxRows = -1; int _MaxCols = -1]'
225 | return Base::_set(other);
| ~~~~~~~~~~^~~~~~~
Clusterer.cpp:195:38: required from here
195 | X = X.rowwise()-X.colwise().mean();
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, -1, 1, false> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:357:7: required from 'class Eigen::internal::redux_evaluator<Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, -1, 1, false> >'
357 | class redux_evaluator : public internal::evaluator<_XprType>
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:414:17: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op<double, double>; Derived = Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, -1, 1, false>; typename Eigen::internal::traits<T>::Scalar = double]'
414 | ThisEvaluator thisEval(derived());
| ^~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Redux.h:463:25: required from 'typename Eigen::internal::traits<T>::Scalar Eigen::DenseBase<Derived>::sum() const [with Derived = Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, -1, 1, false>; typename Eigen::internal::traits<T>::Scalar = double]'
463 | return derived().redux(Eigen::internal::scalar_sum_op<Scalar,Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/VectorwiseOp.h:114:1: required from 'ResultType Eigen::internal::member_sum<ResultType, Scalar>::operator()(const XprType&) const [with XprType = Eigen::Block<const Eigen::Matrix<double, -1, -1, 1>, -1, 1, false>; ResultType = double; Scalar = double]'
97 | { return mat.MEMBER(); } \
| ~~~~~~~~~~^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PartialReduxEvaluator.h:183:21: required from 'const Eigen::internal::evaluator<Eigen::PartialReduxExpr<MatrixType, MemberOp, Direction> >::Scalar Eigen::internal::evaluator<Eigen::PartialReduxExpr<MatrixType, MemberOp, Direction> >::coeff(Eigen::Index) const [with ArgType = Eigen::Matrix<double, -1, -1, 1>; MemberOp = Eigen::internal::member_sum<double, double>; int Direction = 0; Scalar = double; Eigen::Index = long long int]'
183 | return m_functor(m_arg.template subVector<DirectionType(Direction)>(index));
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PartialReduxEvaluator.h:214:47: [ skipping 18 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:890:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Matrix<double, -1, -1, 1>; Src = Eigen::CwiseBinaryOp<scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::Replicate<Eigen::CwiseBinaryOp<scalar_quotient_op<double, double>, const Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, member_sum<double, double>, 0>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >, -1, 1> >; Func = assign_op<double, double>]'
890 | Assignment<ActualDstTypeCleaned,Src,Func>::run(actualDst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:858:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type) [with Dst = Eigen::Matrix<double, -1, -1, 1>; Src = Eigen::CwiseBinaryOp<scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::Replicate<Eigen::CwiseBinaryOp<scalar_quotient_op<double, double>, const Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, member_sum<double, double>, 0>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >, -1, 1> >; Func = assign_op<double, double>; typename enable_if<(! evaluator_assume_aliasing<Src>::value), void*>::type = void*; typename evaluator_traits<SrcXprType>::Shape = Eigen::DenseShape]'
858 | call_assignment_no_alias(dst, src, func);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Matrix<double, -1, -1, 1>; Src = Eigen::CwiseBinaryOp<scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::Replicate<Eigen::CwiseBinaryOp<scalar_quotient_op<double, double>, const Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, member_sum<double, double>, 0>, const Eigen::CwiseNullaryOp<scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >, -1, 1> >]'
836 | call_assignment(dst, src, internal::assign_op<typename Dst::Scalar,typename Src::Scalar>());
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:779:32: required from 'Derived& Eigen::PlainObjectBase<Derived>::_set(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::Replicate<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, Eigen::internal::member_sum<double, double>, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >, -1, 1> >; Derived = Eigen::Matrix<double, -1, -1, 1>]'
779 | internal::call_assignment(this->derived(), other.derived());
| ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase<OtherDerived>&) [with OtherDerived = Eigen::CwiseBinaryOp<Eigen::internal::scalar_difference_op<double, double>, const Eigen::Matrix<double, -1, -1, 1>, const Eigen::Replicate<Eigen::CwiseBinaryOp<Eigen::internal::scalar_quotient_op<double, double>, const Eigen::PartialReduxExpr<Eigen::Matrix<double, -1, -1, 1>, Eigen::internal::member_sum<double, double>, 0>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> > >, -1, 1> >; _Scalar = double; int _Rows = -1; int _Cols = -1; int _Options = 1; int _MaxRows = -1; int _MaxCols = -1]'
225 | return Base::_set(other);
| ~~~~~~~~~~^~~~~~~
Clusterer.cpp:195:38: required from here
195 | X = X.rowwise()-X.colwise().mean();
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:1071:54: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
1071 | PacketAlignment = unpacket_traits<PacketScalar>::alignment,
| ^~~~~~~~~
g++ -std=gnu++11 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I../inst/include -pthread -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c InterfaceUtils.cpp -o InterfaceUtils.o
In file included from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Core:205,
from Clusterer.h:14,
from InterfaceUtils.cpp:9:
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes]
46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i;
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes]
47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b;
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument '__m128' [-Wignored-attributes]
49 | template<> struct is_arithmetic<__m128> { enum { value = true }; };
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes]
50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; };
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument '__m128d' [-Wignored-attributes]
51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; };
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes]
222 | template<> struct unpacket_traits<Packet4f> {
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes]
228 | template<> struct unpacket_traits<Packet2d> {
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes]
1124 | ptranspose(PacketBlock<Packet4f,4>& kernel) {
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes]
1129 | ptranspose(PacketBlock<Packet2d,2>& kernel) {
| ^
In file included from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Core:174:
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes]
16 | struct conj_helper<PACKET_REAL, PACKET_CPLX, false, false> { \
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes]
29 | struct conj_helper<PACKET_CPLX, PACKET_REAL, false, false> { \
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes]
16 | struct conj_helper<PACKET_REAL, PACKET_CPLX, false, false> { \
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes]
29 | struct conj_helper<PACKET_CPLX, PACKET_REAL, false, false> { \
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Core:165:
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<float, 4>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<float, 4, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from 'struct Eigen::internal::traits<Eigen::Quaternion<float> >'
266 | Alignment = internal::traits<Coefficients>::Alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here
24 | ResAlignment = traits<Quaternion<float> >::Alignment
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(4) float>::half' {aka '__m128'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
In file included from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Core:271:
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Matrix<float, 4, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Matrix<float, 4, 1> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<float, 4, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix<float, 4, 1>'
178 | class Matrix
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase<Eigen::Quaternion<float> >'
46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType;
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from 'class Eigen::Quaternion<float>'
273 | class Quaternion : public QuaternionBase<Quaternion<_Scalar,_Options> >
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here
27 | {
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 4>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 4, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from 'struct Eigen::internal::traits<Eigen::Quaternion<double> >'
266 | Alignment = internal::traits<Coefficients>::Alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here
98 | ResAlignment = traits<Quaternion<double> >::Alignment
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Matrix<double, 4, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Matrix<double, 4, 1> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix<double, 4, 1>'
178 | class Matrix
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase<Eigen::Quaternion<double> >'
46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType;
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from 'class Eigen::Quaternion<double>'
273 | class Quaternion : public QuaternionBase<Quaternion<_Scalar,_Options> >
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here
102 | {
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, -1>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, -1, -1, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix<double, -1, -1, 1>'
178 | class Matrix
| ^~~~~~
Clusterer.h:25:17: required from here
25 | RowMatrixXd centers;
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, -1, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Matrix<double, -1, -1, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Matrix<double, -1, -1, 1> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, -1, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix<double, -1, -1, 1>'
178 | class Matrix
| ^~~~~~
Clusterer.h:25:17: required from here
25 | RowMatrixXd centers;
| ^~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1, 1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, -1, 1> >'
60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp<NullaryOp, PlainObjectType> >::type, internal::no_assignment_operator
| ^~~~~~~~~~~~~~
InterfaceUtils.cpp:26:39: required from here
26 | RowMatrixXd data = RowMatrixXd::Zero(rows,cols);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, -1, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Matrix<double, -1, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Matrix<double, -1, 1> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, -1, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix<double, -1, 1>'
178 | class Matrix
| ^~~~~~
InterfaceUtils.cpp:35:55: required from here
35 | Eigen::VectorXd numericVector_to_eigen(NumericVector X){
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> > >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> > >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, Eigen::Matrix<double, -1, 1> >'
60 | class CwiseNullaryOp : public internal::dense_xpr_base< CwiseNullaryOp<NullaryOp, PlainObjectType> >::type, internal::no_assignment_operator
| ^~~~~~~~~~~~~~
InterfaceUtils.cpp:37:47: required from here
37 | Eigen::VectorXd data = Eigen::VectorXd::Zero(rows);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
g++ -std=gnu++11 -I"E:/biocbuild/bbs-3.21-bioc/R/include" -DNDEBUG -I../inst/include -pthread -I'E:/biocbuild/bbs-3.21-bioc/R/library/Rcpp/include' -I'E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include' -I"C:/rtools45/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c RcppExports.cpp -o RcppExports.o
In file included from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Core:205,
from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Dense:1,
from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/RcppEigenForward.h:28,
from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/RcppEigen.h:25,
from RcppExports.cpp:4:
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:46:40: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes]
46 | typedef eigen_packet_wrapper<__m128i, 0> Packet4i;
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:47:40: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes]
47 | typedef eigen_packet_wrapper<__m128i, 1> Packet16b;
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:49:39: warning: ignoring attributes on template argument '__m128' [-Wignored-attributes]
49 | template<> struct is_arithmetic<__m128> { enum { value = true }; };
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:50:40: warning: ignoring attributes on template argument '__m128i' [-Wignored-attributes]
50 | template<> struct is_arithmetic<__m128i> { enum { value = true }; };
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:51:40: warning: ignoring attributes on template argument '__m128d' [-Wignored-attributes]
51 | template<> struct is_arithmetic<__m128d> { enum { value = true }; };
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:222:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes]
222 | template<> struct unpacket_traits<Packet4f> {
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:228:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes]
228 | template<> struct unpacket_traits<Packet2d> {
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1124:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes]
1124 | ptranspose(PacketBlock<Packet4f,4>& kernel) {
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:1129:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes]
1129 | ptranspose(PacketBlock<Packet2d,2>& kernel) {
| ^
In file included from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Core:174:
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes]
16 | struct conj_helper<PACKET_REAL, PACKET_CPLX, false, false> { \
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__m128'} [-Wignored-attributes]
29 | struct conj_helper<PACKET_CPLX, PACKET_REAL, false, false> { \
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:173:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
173 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:16:60: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes]
16 | struct conj_helper<PACKET_REAL, PACKET_CPLX, false, false> { \
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:29:60: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__m128d'} [-Wignored-attributes]
29 | struct conj_helper<PACKET_CPLX, PACKET_REAL, false, false> { \
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:298:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL'
298 | EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Core:165:
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<float, 4>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<float, 4, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from 'struct Eigen::internal::traits<Eigen::Quaternion<float> >'
266 | Alignment = internal::traits<Coefficients>::Alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:24:46: required from here
24 | ResAlignment = traits<Quaternion<float> >::Alignment
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(4) float>::half' {aka '__m128'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
In file included from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Core:271:
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<float, 4, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Matrix<float, 4, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Matrix<float, 4, 1> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<float, 4, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix<float, 4, 1>'
178 | class Matrix
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase<Eigen::Quaternion<float> >'
46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType;
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from 'class Eigen::Quaternion<float>'
273 | class Quaternion : public QuaternionBase<Quaternion<_Scalar,_Options> >
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:27:3: required from here
27 | {
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<float>::type' {aka '__m128'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet<double, 4>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits<Eigen::Matrix<double, 4, 1> >'
22 | typedef typename find_best_packet<_Scalar,size>::type PacketScalar;
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:266:49: required from 'struct Eigen::internal::traits<Eigen::Quaternion<double> >'
266 | Alignment = internal::traits<Coefficients>::Alignment,
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:98:47: required from here
98 | ResAlignment = traits<Quaternion<double> >::Alignment
| ^~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
190 | bool Stop = Size==Dynamic || (Size%unpacket_traits<PacketType>::size)==0 || is_same<PacketType,typename unpacket_traits<PacketType>::half>::value>
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:190:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__m128d'} [-Wignored-attributes]
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:208:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
208 | typedef typename find_best_packet_helper<Size,typename packet_traits<T>::type>::type type;
| ^~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 0>':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:302:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 1>'
302 | class DenseCoeffsBase<Derived, WriteAccessors> : public DenseCoeffsBase<Derived, ReadOnlyAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:555:7: required from 'class Eigen::DenseCoeffsBase<Eigen::Matrix<double, 4, 1>, 3>'
555 | class DenseCoeffsBase<Derived, DirectWriteAccessors>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase<Eigen::Matrix<double, 4, 1> >'
41 | template<typename Derived> class DenseBase
| ^~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase<Eigen::Matrix<double, 4, 1> >'
48 | template<typename Derived> class MatrixBase
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase<Eigen::Matrix<double, 4, 1> >'
98 | class PlainObjectBase : public internal::dense_xpr_base<Derived>::type
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix<double, 4, 1>'
178 | class Matrix
| ^~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase<Eigen::Quaternion<double> >'
46 | typedef typename Coefficients::CoeffReturnType CoeffReturnType;
| ^~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:273:7: required from 'class Eigen::Quaternion<double>'
273 | class Quaternion : public QuaternionBase<Quaternion<_Scalar,_Options> >
| ^~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SIMD.h:102:3: required from here
102 | {
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:56:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
56 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
In file included from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/SparseCore:37,
from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/Sparse:26,
from E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/RcppEigenForward.h:29:
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of 'class Eigen::SparseMatrixBase<Eigen::SparseMatrix<double, 0, int> >':
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from 'class Eigen::SparseCompressedBase<Eigen::SparseMatrix<double, 0, int> >'
36 | class SparseCompressedBase
| ^~~~~~~~~~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from 'class Eigen::SparseMatrix<double, 0, int>'
96 | class SparseMatrix
| ^~~~~~~~~~~~
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here
61 | typedef Triplet<double> T;
| ^
E:/biocbuild/bbs-3.21-bioc/R/library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits<double>::type' {aka '__m128d'} [-Wignored-attributes]
47 | >::type PacketReturnType;
| ^~~~~~~~~~~~~~~~
g++ -shared -s -static-libgcc -o DepecheR.dll tmp.def Clusterer.o InterfaceUtils.o RcppExports.o -LC:/rtools45/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools45/x86_64-w64-mingw32.static.posix/lib -LE:/biocbuild/bbs-3.21-bioc/R/bin/x64 -lR
if test -e "/usr/bin/strip" && test -e "/bin/uname" && [[ `uname` == "Linux" ]] ; then /usr/bin/strip --strip-debug DepecheR.dll; fi
rm *.o
installing to E:/biocbuild/bbs-3.21-bioc/R/library/00LOCK-DepecheR/00new/DepecheR/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (DepecheR)
DepecheR.Rcheck/tests/testthat.Rout
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> library(testthat)
> library(DepecheR)
>
> test_check("DepecheR")
[1] "Now the first bit is done, and the iterative part takes off"
[1] "Clusters 1 to 1 smoothed in 7.54586100578308 . Now, 0 clusters are left."
[1] "Now the first bit is done, and the iterative part takes off"
[1] "Clusters 1 to 1 smoothed in 7.22373294830322 . Now, 0 clusters are left."
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 23 ]
>
> proc.time()
user system elapsed
5.93 0.76 62.51
DepecheR.Rcheck/DepecheR-Ex.timings
| name | user | system | elapsed | |
| dAllocate | 0.11 | 0.00 | 0.11 | |
| dColorPlot | 0.09 | 0.02 | 0.11 | |
| dColorVector | 0.12 | 0.00 | 0.13 | |
| dContours | 1.99 | 0.08 | 2.06 | |
| dDensityPlot | 0.12 | 0.03 | 0.15 | |
| dResidualPlot | 0.16 | 0.00 | 0.16 | |
| dScale | 0.33 | 0.00 | 0.33 | |
| dSplsda | 0.17 | 0.00 | 0.17 | |
| dViolins | 0.17 | 0.00 | 0.17 | |
| dWilcox | 0.16 | 0.00 | 0.16 | |
| depeche | 0.14 | 0.00 | 0.14 | |
| groupProbPlot | 0.18 | 0.00 | 0.19 | |
| nUniqueNeighDons | 0.21 | 0.02 | 0.22 | |
| neighSmooth | 0.2 | 0.0 | 0.2 | |