Christelle Reynès
| Snapshot Date: 2026-03-10 13:40 -0400 (Tue, 10 Mar 2026) |
| git_url: https://git.bioconductor.org/packages/ISoLDE |
| git_branch: devel |
| git_last_commit: e5f684d |
| git_last_commit_date: 2025-10-29 10:30:57 -0400 (Wed, 29 Oct 2025) |
| Back to Multiple platform build/check report for BioC 3.23: simplified long |
|
This page was generated on 2026-03-11 11:33 -0400 (Wed, 11 Mar 2026).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) | x86_64 | R Under development (unstable) (2026-03-05 r89546) -- "Unsuffered Consequences" | 4719 |
| kjohnson3 | macOS 13.7.7 Ventura | arm64 | R Under development (unstable) (2026-03-01 r89506) -- "Unsuffered Consequences" | 2847 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 1102/2360 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| ISoLDE 1.39.0 (landing page) Christelle Reynès
| nebbiolo1 | Linux (Ubuntu 24.04.3 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| kjohnson3 | macOS 13.7.7 Ventura / arm64 | ERROR | OK | ERROR | ERROR | |||||||||
| See other builds for ISoLDE in R Universe. | ||||||||||||||
|
To the developers/maintainers of the ISoLDE package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ISoLDE.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: ISoLDE |
| Version: 1.39.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:ISoLDE.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings ISoLDE_1.39.0.tar.gz |
| StartedAt: 2026-03-10 16:13:33 -0400 (Tue, 10 Mar 2026) |
| EndedAt: 2026-03-10 16:13:37 -0400 (Tue, 10 Mar 2026) |
| EllapsedTime: 4.0 seconds |
| RetCode: 1 |
| Status: ERROR |
| CheckDir: ISoLDE.Rcheck |
| Warnings: NA |
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### Running command:
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### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:ISoLDE.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings ISoLDE_1.39.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.23-bioc/meat/ISoLDE.Rcheck’
* using R Under development (unstable) (2026-03-01 r89506)
* using platform: aarch64-apple-darwin23
* R was compiled by
Apple clang version 17.0.0 (clang-1700.3.19.1)
GNU Fortran (GCC) 14.2.0
* running under: macOS Sonoma 14.8.3
* using session charset: UTF-8
* current time: 2026-03-10 20:13:33 UTC
* using option ‘--no-vignettes’
* checking for file ‘ISoLDE/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ISoLDE’ version ‘1.39.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ISoLDE’ can be installed ... ERROR
Installation failed.
See ‘/Users/biocbuild/bbs-3.23-bioc/meat/ISoLDE.Rcheck/00install.out’ for details.
* DONE
Status: 1 ERROR
See
‘/Users/biocbuild/bbs-3.23-bioc/meat/ISoLDE.Rcheck/00check.log’
for details.
ISoLDE.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL ISoLDE ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library’ * installing *source* package ‘ISoLDE’ ... ** this is package ‘ISoLDE’ version ‘1.39.0’ ** using staged installation ** libs using C compiler: ‘Apple clang version 15.0.0 (clang-1500.3.9.4)’ using SDK: ‘MacOSX14.4.sdk’ clang -arch arm64 -std=gnu23 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/opt/R/arm64/include -fPIC -falign-functions=64 -Wall -g -O2 -c Isolde.c -o Isolde.o error: invalid value 'gnu23' in '-std=gnu23' note: use 'c89', 'c90', or 'iso9899:1990' for 'ISO C 1990' standard note: use 'iso9899:199409' for 'ISO C 1990 with amendment 1' standard note: use 'gnu89' or 'gnu90' for 'ISO C 1990 with GNU extensions' standard note: use 'c99' or 'iso9899:1999' for 'ISO C 1999' standard note: use 'gnu99' for 'ISO C 1999 with GNU extensions' standard note: use 'c11' or 'iso9899:2011' for 'ISO C 2011' standard note: use 'gnu11' for 'ISO C 2011 with GNU extensions' standard note: use 'c17', 'iso9899:2017', 'c18', or 'iso9899:2018' for 'ISO C 2017' standard note: use 'gnu17' or 'gnu18' for 'ISO C 2017 with GNU extensions' standard note: use 'c2x' for 'Working Draft for ISO C2x' standard note: use 'gnu2x' for 'Working Draft for ISO C2x with GNU extensions' standard make: *** [Isolde.o] Error 1 ERROR: compilation failed for package ‘ISoLDE’ * removing ‘/Library/Frameworks/R.framework/Versions/4.6/Resources/library/ISoLDE’